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List of works by Jan M Ruijter

A caudal proliferating growth center contributes to both poles of the forming heart tube

scientific article published on 4 December 2008

Amplification of nonspecific products in quantitative polymerase chain reactions (qPCR).

scientific article published in November 2017

An interactive three-dimensional digital atlas and quantitative database of human development

scientific article published in November 2016

Arginine deficiency affects early B cell maturation and lymphoid organ development in transgenic mice

article

Arginine deficiency affects early B cell maturation and lymphoid organ development in transgenic mice.

scientific article

Atrial and ventricular myosin heavy-chain expression in the developing chicken heart: strengths and limitations of non-radioactive in situ hybridization

scientific article published on 06 February 2006

Bias in the Cq value observed with hydrolysis probe based quantitative PCR can be corrected with the estimated PCR efficiency value.

scientific article published on 6 February 2010

Bone structure changes in iliac crest grafts combined with implants

scientific article

Cardiomyocytes derived from embryonic stem cells resemble cardiomyocytes of the embryonic heart tube.

scientific article published in May 2003

Cellular concentrations of glutamine synthetase in murine organs

scientific article published on 01 April 2006

Colourimetric analysis of thermally altered human bone samples.

scientific article

Comparison of Schwann cell and sciatic nerve transcriptomes indicates that mouse is a valid model for the human peripheral nervous system

scientific article

Deletion of Fstl1 (Follistatin-Like 1) From the Endocardial/Endothelial Lineage Causes Mitral Valve Disease

scientific article published on 13 July 2017

Dentofacial characteristics of patients with hypodontia

scientific article published on 10 July 2009

Diagnostic value of flecainide testing in unmasking SCN5A-related Brugada syndrome

scientific article published on 09 June 2006

EMERGE: a flexible modelling framework to predict genomic regulatory elements from genomic signatures.

scientific article published on 3 November 2015

Effect of arginine deficiency on arginine-dependent post-translational protein modifications in mice

scientific article published in February 2005

Epicardium and myocardium separate from a common precursor pool by crosstalk between bone morphogenetic protein- and fibroblast growth factor-signaling pathways

scientific article

Evaluation of qPCR curve analysis methods for reliable biomarker discovery: bias, resolution, precision, and implications

scientific article

Evaluation of the similarity of gene expression data estimated with SAGE and Affymetrix GeneChips

scientific article

Exercise-induced ECG changes in Brugada syndrome.

scientific article

Expression analysis of subtractively enriched libraries (EASEL): a widely applicable approach to the identification of differentially expressed genes

scientific article

Facilitatory and inhibitory effects of SCN5A mutations on atrial fibrillation in Brugada syndrome ⬇️

scientific article published on January 26, 2011

Factor correction as a tool to eliminate between-session variation in replicate experiments: application to molecular biology and retrovirology

scientific article

Fever-induced QTc prolongation and ventricular arrhythmias in individuals with type 2 congenital long QT syndrome

scientific article

Fluorescent-increase kinetics of different fluorescent reporters used for qPCR depend on monitoring chemistry, targeted sequence, type of DNA input and PCR efficiency.

scientific article published on 14 January 2014

Full transcriptome analysis of rhabdomyosarcoma, normal, and fetal skeletal muscle: statistical comparison of multiple SAGE libraries

scientific article

Gene regulatory elements of the cardiac conduction system

scientific article published on 22 August 2013

Glutamine synthetase deficiency in murine astrocytes results in neonatal death

scientific article published in April 2010

Glutamine synthetase in muscle is required for glutamine production during fasting and extrahepatic ammonia detoxification.

scientific article

Growth of the developing mouse heart: An interactive qualitative and quantitative 3D atlas ⬇️

scientific article published on May 14, 2012

Hepatic HNF4α deficiency induces periportal expression of glutamine synthetase and other pericentral enzymes

scientific article published on 01 February 2007

Hepatic response to right ventricular pressure overload

scientific article published in October 2004

Image cytometry: protocols for 2D and 3D quantification in microscopic images

scientific article

Increased cardiac workload by closure of the ductus arteriosus leads to hypertrophy and apoptosis rather than to hyperplasia in the late fetal period

scientific article published on 31 August 2004

Integrating multi-scale knowledge on cardiac development into a computational model of ventricular trabeculation.

scientific article published on 6 October 2014

Interfering With DNA Decondensation as a Strategy Against Mycobacteria

scientific article published in 2018

Maternal diabetes causes developmental delay and death in early-somite mouse embryos

scientific article published on 15 September 2017

Measurement and 3D-visualization of cell-cycle length using double labelling with two thymidine analogues applied in early heart development ⬇️

scientific article published on October 16, 2012

Molecular imaging of the embryonic heart: Fables and facts on 3D imaging of gene expression patterns

scientific article

More than a decade of developmental gene expression atlases: where are we now?

scientific article published on December 2009

More than a decade of developmental gene expression atlases: where are we now?

scientific article published on 13 May 2010

Msx1 and Msx2 are functional interacting partners of T-box factors in the regulation of Connexin43

scientific journal article

OccuPeak: ChIP-Seq peak calling based on internal background modelling

scientific article

Overexpression of arginase I in enterocytes of transgenic mice elicits a selective arginine deficiency and affects skin, muscle, and lymphoid development

scientific article published on 01 July 2002

Permucosal implants combined with iliac crest onlay grafts used in extreme atrophy of the mandible: long-term results of a prospective study

scientific article published in February 2006

Pivotal role of glutamine synthetase in ammonia detoxification

scientific article published on 19 September 2016

Polymorphisms in human connexin40 gene promoter are associated with increased risk of hypertension in men

scientific article published on 01 February 2006

Practical data handling pipeline improves performance of qPCR-based circulating miRNA measurements

scientific article

Prenatal exposure to thyroid hormone is necessary for normal postnatal development of murine heart and lungs

scientific article published in August 2004

Quantification of viability in organotypic multicellular spheroids of human malignant glioma using lactate dehydrogenase activity: a rapid and reliable automated assay

scientific article

Reconstruction of the patterns of gene expression in the developing mouse heart reveals an architectural arrangement that facilitates the understanding of atrial malformations and arrhythmias

scientific article published on 18 November 2004

Reference genes for gene expression studies in the mouse heart

scientific article

Regionalized sequence of myocardial cell growth and proliferation characterizes early chamber formation.

scientific article

Removal of between-run variation in a multi-plate qPCR experiment

scientific article

Retinal degeneration and ionizing radiation hypersensitivity in a mouse model for Cockayne syndrome

scientific journal article

Scaling of gene expression data allowing the comparison of different gene expression platforms

scientific article

Sensitivity and accuracy of quantitative real-time polymerase chain reaction using SYBR green I depends on cDNA synthesis conditions

scientific article

Serial noninvasive assessment of apoptosis during right ventricular disease progression in rats.

scientific article published on 17 July 2009

Statistical comparison of two or more SAGE libraries: one tag at a time

scientific article

Statistical evaluation of SAGE libraries: consequences for experimental design

scientific article

Stereological measurement of porto-central gradients in gene expression in mouse liver

scientific article published in February 2004

Structural requirements of the glucocorticoid-response unit of the carbamoyl-phosphate synthase gene

scientific article published on September 2004

TBX5 overexpression stimulates differentiation of chamber myocardium in P19C16 embryonic carcinoma cells.

scientific article published on January 2003

The RL-ET-14 cell line mediates expression of glutamine synthetase through the upstream enhancer/promoter region.

scientific article

The geometrical precision of virtual bone models derived from clinical computed tomography data for forensic anthropology

scientific article

The human neonatal small intestine has the potential for arginine synthesis; developmental changes in the expression of arginine-synthesizing and -catabolizing enzymes

scientific article

The interactive presentation of 3D information obtained from reconstructed datasets and 3D placement of single histological sections with the 3D portable document format ⬇️

scientific article published on January 1, 2011

Three-dimensional reconstruction of gene expression patterns during cardiac development ⬇️

scientific article published on May 13, 2003

Tubulin polymerization modifies cardiac sodium channel expression and gating

scientific article published on 26 October 2009

Upstream and intronic regulatory sequences interact in the activation of the glutamine synthetase promoter

scientific article published in January 2003

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