List of works - Daniel B. Stouffer

"Disentangling nestedness" disentangled

scientific article published in August 2013

'Ecosystomics': ecology by sequencer

scientific article published on 24 April 2012

A Poissonian explanation for heavy tails in e-mail communication

scholarly article

A modeling framework for the establishment and spread of invasive species in heterogeneous environments. ⬇️

scientific article published on 8 September 2017

A robust measure of food web intervality

scientific article

Accurate predictions of coexistence in natural systems require the inclusion of facilitative interactions and environmental dependency

article published in 2018

All ecological models are wrong, but some are useful

scientific article published on 01 February 2019

Are parasite richness and abundance linked to prey species richness and individual feeding preferences in fish hosts?

scientific article published on 17 November 2015

Assessing unintended human‐mediated dispersal using visitation networks

scientific article published on 10 February 2021

Between-year changes in community composition shape species’ roles in an Arctic plant-pollinator network

article

Beyond species: why ecological interaction networks vary through space and time

article

Birds optimize fruit size consumed near their geographic range limits

scientific article published on 19 July 2024

Bringing Elton and Grinnell together: a quantitative framework to represent the biogeography of ecological interaction networks

scholarly article published 26 May 2016

Bringing Elton and Grinnell together: a quantitative framework to represent the biogeography of ecological interaction networks

scientific article published on 02 October 2018

Bringing the Eltonian niche into functional diversity

scientific article published on 10 July 2018

Community dynamics and sensitivity to model structure: towards a probabilistic view of process-based model predictions

scientific article published on 05 December 2018

Compartmentalization increases food-web persistence ⬇️

scientific article published on February 9, 2011

Concomitant predation on parasites is highly variable but constrains the ways in which parasites contribute to food web structure

scientific article

Contemporary Ecological Interactions Improve Models of Past Trait Evolution

scientific article published on 20 February 2018

Cophylogenetic signal is detectable in pollination interactions across ecological scales

scientific article

Correction to 'Latitudinal gradients in biotic niche breadth vary across ecosystem types'

scientific article published on 26 September 2018

Cyclic population dynamics and density-dependent intransitivity as pathways to coexistence between co-occurring annual plants

article

Describe, understand and predict: why do we need networks in ecology?

article by Timothée Poisot et al published December 2016 in Functional Ecology

Ecogeographical rules and the macroecology of food webs

scientific article published on 20 May 2019

Ecological engineering and sustainability: A new opportunity for chemical engineering

article

Environmental context, parameter sensitivity, and structural sensitivity impact predictions of annual‐plant coexistence

scientific article published on 6 October 2023

Estimating interaction matrices from performance data for diverse systems

Estimating interaction strengths for diverse horizontal systems using performance data

scientific article published on 9 February 2023

Evidence for the existence of a robust pattern of prey selection in food webs.

scientific article published in August 2007

Evolutionary conservation of species' roles in food webs

scientific article published in March 2012

Exotic birds increase generalization and compensate for native bird decline in plant-frugivore assemblages

scientific article

Exploiting node metadata to predict interactions in bipartite networks using graph embedding and neural networks

scientific article published in 2022

Exploiting node metadata to predict interactions in large networks using graph embedding and neural networks

Food webs: reconciling the structure and function of biodiversity

scientific article

Global and regional ecological boundaries drive abrupt changes in avian frugivory interactions

Hidden layers of density dependence in consumer feeding rates

scientific article published on 06 January 2021

Higher-order interactions capture unexplained complexity in diverse communities

scientific article published on 17 February 2017

Higher-order interactions mitigate direct negative effects on population dynamics of herbaceous plants during succession

scientific article published on 17 April 2020

Host taxonomy constrains the properties of trophic transmission routes for parasites in lake food webs

scientific article published on 13 June 2017

How ecological networks evolve

How exotic plants integrate into pollination networks ⬇️

scientific article

Identifying a common backbone of interactions underlying food webs from different ecosystems.

scientific article published on 4 July 2018

Interactions retain the co-phylogenetic matching that communities lost

scholarly article published 26 November 2015

Intransitivity is infrequent and fails to promote annual plant coexistence without pairwise niche differences

scientific article published on 27 February 2017

Keystoneness, centrality, and the structural controllability of ecological networks

scientific article published on 05 February 2019

Knowledge of predator-prey interactions improves predictions of immigration and extinction in island biogeography

scholarly article by Alyssa R. Cirtwill & Daniel B. Stouffer published 25 June 2015 in Global Ecology and Biogeography

Landscape metrics as a framework to measure the effect of landscape structure on the spread of invasive insect species

scientific article

Latitudinal gradients in biotic niche breadth vary across ecosystem types

scientific article published in November 2015

Limited dispersal into appropriate microhabitats likely explains recruitment failure in a chimpanzee-dependent tree species

scientific article published in 2015

Linking functional traits and demography to model species-rich communities

scientific article published on 11 May 2021

Motifs in bipartite ecological networks: uncovering indirect interactions

article

Native and invasive hosts play different roles in host–parasite networks

scientific article published on 17 January 2020

Native turncoats and indirect facilitation of species invasions. ⬇️

scientific article published in January 2018

Nestedness versus modularity in ecological networks: two sides of the same coin?

scientific article

Niche packing and local coexistence in a megadiverse guild of frugivorous birds are mediated by fruit dependence and shifts in interaction frequencies

scientific article

No such thing as a free lunch: interaction costs and the structure and stability of mutualistic networks

scientific article published on 11 December 2019

Non‐additive biotic interactions improve predictions of tropical tree growth and impact community size structure

scientific article published on 19 November 2021

On universality in human correspondence activity.

scientific article published in September 2009

Origin of compartmentalization in food webs.

scientific article published on October 2010

Parasites affect food web structure primarily through increased diversity and complexity

scientific article

Plant interaction networks reveal the limits of our understanding of diversity maintenance

scientific article published in February 2024

Predictions of biodiversity are improved by integrating trait-based competition with abiotic filtering

scientific article published on 13 July 2021

Predictions of biodiversity are improved by integrating trait‐based competition with abiotic filtering

scientific article published on 13 February 2022

Quantitative analysis of the local structure of food webs

scientific article (publication date: 21 May 2007)

Reconciling resilience across ecological systems, species and subdisciplines

scientific article

Related plants tend to share pollinators and herbivores, but strength of phylogenetic signal varies among plant families

scientific article published on 15 February 2020

Sahul's megafauna were vulnerable to plant‐community changes due to their position in the trophic network

scientific article published on 13 December 2021

Scale‐dependent effects of landscape structure on pollinator traits, species interactions and pollination success

scientific article published in 2023

Seed dispersal in heterogeneous landscapes: linking field observations with spatially explicit models

scientific article published in 2014

Seeing the forest for the trees: Putting multilayer networks to work for community ecology

scientific article published in 2018

Similar composition of functional roles in Andean seed-dispersal networks, despite high species and interaction turnover

scientific article published on 29 February 2020

Simulations of biomass dynamics in community food webs

scientific article published in 2017

Simulations of biomass dynamics in community food webs

article

Species’ roles in food webs show fidelity across a highly variable oak forest

scientific article published in 2014

Strong contributors to network persistence are the most vulnerable to extinction

scientific article

Sustaining ecosystem functions in a changing world: a call for an integrated approach

scientific article published in June 2013

Synthetic datasets and community tools for the rapid testing of ecological hypotheses

scientific article published in 2015

Systematic bias in studies of consumer functional responses

scientific article published on 31 December 2020

The assembly and disassembly of ecological networks

scientific article

The marine fish food web is globally connected

scientific article published on 29 July 2019

The mechanistic basis for higher-order interactions and non-additivity in competitive communities

scientific article published on 24 January 2019

The phylogenetic component of food web structure and intervality

scientific article published on 03 August 2015

The role of body mass in diet contiguity and food-web structure

scientific article published on 14 March 2011

The structure of probabilistic networks

scientific article published in 2015

The structure of probabilistic networks

Tricky partners: native plants show stronger interaction preferences than their exotic counterparts

scientific article published on 30 October 2020

Uncovering indirect interactions in bipartite ecological networks

Understanding food-web persistence from local to global scales

scientific article

Unmasking structural patterns in incidence matrices: an application to ecological data

scientific article published on 01 February 2019

Untangling the seasonal dynamics of plant-pollinator communities

scientific article published on 14 August 2020

Using network analysis to study and manage human-mediated dispersal of exotic species

scientific article published in 2023

mangal - making ecological network analysis simple

scientific article published in 2015

mangal - making ecological network analysis simple

paco: implementing Procrustean Approach to Cophylogeny in R

scientific article published in 2017

List of works by Daniel B. Stouffer

"Disentangling nestedness" disentangled

'Ecosystomics': ecology by sequencer

A Poissonian explanation for heavy tails in e-mail communication

A modeling framework for the establishment and spread of invasive species in heterogeneous environments. ⬇️

A robust measure of food web intervality

Accurate predictions of coexistence in natural systems require the inclusion of facilitative interactions and environmental dependency

All ecological models are wrong, but some are useful

Are parasite richness and abundance linked to prey species richness and individual feeding preferences in fish hosts?

Assessing unintended human‐mediated dispersal using visitation networks

Between-year changes in community composition shape species’ roles in an Arctic plant-pollinator network

Beyond species: why ecological interaction networks vary through space and time

Birds optimize fruit size consumed near their geographic range limits

Bringing Elton and Grinnell together: a quantitative framework to represent the biogeography of ecological interaction networks

Bringing Elton and Grinnell together: a quantitative framework to represent the biogeography of ecological interaction networks

Bringing the Eltonian niche into functional diversity

Community dynamics and sensitivity to model structure: towards a probabilistic view of process-based model predictions

Compartmentalization increases food-web persistence ⬇️

Concomitant predation on parasites is highly variable but constrains the ways in which parasites contribute to food web structure

Contemporary Ecological Interactions Improve Models of Past Trait Evolution

Cophylogenetic signal is detectable in pollination interactions across ecological scales

Correction to 'Latitudinal gradients in biotic niche breadth vary across ecosystem types'

Cyclic population dynamics and density-dependent intransitivity as pathways to coexistence between co-occurring annual plants

Describe, understand and predict: why do we need networks in ecology?

Ecogeographical rules and the macroecology of food webs

Ecological engineering and sustainability: A new opportunity for chemical engineering

Environmental context, parameter sensitivity, and structural sensitivity impact predictions of annual‐plant coexistence

Estimating interaction matrices from performance data for diverse systems

Estimating interaction strengths for diverse horizontal systems using performance data

Evidence for the existence of a robust pattern of prey selection in food webs.

Evolutionary conservation of species' roles in food webs

Exotic birds increase generalization and compensate for native bird decline in plant-frugivore assemblages

Exploiting node metadata to predict interactions in bipartite networks using graph embedding and neural networks

Exploiting node metadata to predict interactions in large networks using graph embedding and neural networks

Food webs: reconciling the structure and function of biodiversity

Global and regional ecological boundaries drive abrupt changes in avian frugivory interactions

Hidden layers of density dependence in consumer feeding rates

Higher-order interactions capture unexplained complexity in diverse communities

Higher-order interactions mitigate direct negative effects on population dynamics of herbaceous plants during succession

Host taxonomy constrains the properties of trophic transmission routes for parasites in lake food webs

How ecological networks evolve

How exotic plants integrate into pollination networks ⬇️

Identifying a common backbone of interactions underlying food webs from different ecosystems.

Interactions retain the co-phylogenetic matching that communities lost

Intransitivity is infrequent and fails to promote annual plant coexistence without pairwise niche differences

Keystoneness, centrality, and the structural controllability of ecological networks

Knowledge of predator-prey interactions improves predictions of immigration and extinction in island biogeography

Landscape metrics as a framework to measure the effect of landscape structure on the spread of invasive insect species

Latitudinal gradients in biotic niche breadth vary across ecosystem types

Limited dispersal into appropriate microhabitats likely explains recruitment failure in a chimpanzee-dependent tree species

Linking functional traits and demography to model species-rich communities

Motifs in bipartite ecological networks: uncovering indirect interactions

Native and invasive hosts play different roles in host–parasite networks

Native turncoats and indirect facilitation of species invasions. ⬇️

Nestedness versus modularity in ecological networks: two sides of the same coin?

Niche packing and local coexistence in a megadiverse guild of frugivorous birds are mediated by fruit dependence and shifts in interaction frequencies

No such thing as a free lunch: interaction costs and the structure and stability of mutualistic networks

Non‐additive biotic interactions improve predictions of tropical tree growth and impact community size structure

On universality in human correspondence activity.

Origin of compartmentalization in food webs.

Parasites affect food web structure primarily through increased diversity and complexity

Plant interaction networks reveal the limits of our understanding of diversity maintenance

Predictions of biodiversity are improved by integrating trait-based competition with abiotic filtering

Predictions of biodiversity are improved by integrating trait‐based competition with abiotic filtering

Quantitative analysis of the local structure of food webs

Reconciling resilience across ecological systems, species and subdisciplines

Related plants tend to share pollinators and herbivores, but strength of phylogenetic signal varies among plant families

Sahul's megafauna were vulnerable to plant‐community changes due to their position in the trophic network

Scale‐dependent effects of landscape structure on pollinator traits, species interactions and pollination success

Seed dispersal in heterogeneous landscapes: linking field observations with spatially explicit models

Seeing the forest for the trees: Putting multilayer networks to work for community ecology

Similar composition of functional roles in Andean seed-dispersal networks, despite high species and interaction turnover

Simulations of biomass dynamics in community food webs

Simulations of biomass dynamics in community food webs

Species’ roles in food webs show fidelity across a highly variable oak forest

Strong contributors to network persistence are the most vulnerable to extinction

Sustaining ecosystem functions in a changing world: a call for an integrated approach

Synthetic datasets and community tools for the rapid testing of ecological hypotheses

Systematic bias in studies of consumer functional responses

The assembly and disassembly of ecological networks