List of works - Zaid Abdo

A comparative study of the gut microbiome in Egyptian patients with Type I and Type II diabetes

scientific article published on 09 September 2020

A step toward barcoding life: a model-based, decision-theoretic method to assign genes to preexisting species groups

scientific article

Accounting for Uncertainty in the Tree Topology Has Little Effect on the Decision-Theoretic Approach to Model Selection in Phylogeny Estimation

article

Advances in the use of terminal restriction fragment length polymorphism (T-RFLP) analysis of 16S rRNA genes to characterize microbial communities.

scientific article published on 22 July 2008

An Aptamer-Based Proteomic Analysis of Plasma from Cats (Felis catus) with Clinical Feline Infectious Peritonitis

scientific article published in 2024

Applications of the FIV Model to Study HIV Pathogenesis

scientific article published on 20 April 2018

Association between Trichomonas vaginalis and vaginal bacterial community composition among reproductive-age women

scientific article published in October 2012

Associations between Escherichia coli O157 shedding and the faecal microbiota of dairy cows

journal article published in 2018

Associations between sexual habits, menstrual hygiene practices, demographics and the vaginal microbiome as revealed by Bayesian network analysis.

scientific article

Bacterial diversity in a glacier foreland of the high Arctic

scientific article published in March 2010

Bacterial succession in a glacier foreland of the High Arctic.

scientific article published on 09 July 2009

Caring about trees in the forest: incorporating frailty in risk analysis for personalized medicine

scientific article

Characterization of the diversity and temporal stability of bacterial communities in human milk

scientific article

Combining mathematical models and statistical methods to understand and predict the dynamics of antibiotic-sensitive mutants in a population of resistant bacteria during experimental evolution

scientific article

Complete Genome Sequences of Eight Streptococcus equi subsp. <i>zooepidemicus</i> Strains Isolated from Mares in Estrus with Endometritis

publication published on 01 July 2021

Contrasting Codon Usage Patterns and Purifying Selection at the Mating Locus in Putatively Asexual Alternaria Fungal Species ⬇️

scientific article published on May 19, 2011

Derivation of chicken induced pluripotent stem cells tolerant to Newcastle disease virus-induced lysis through multiple rounds of infection

scientific article published on 05 December 2016

Determining the distribution of fitness effects using a generalized Beta-Burr distribution

scientific article

Differences in stylet sheath occurrence and the fibrous ring (sclerenchyma) between xCitroncirus plants relatively resistant or susceptible to adults of the Asian citrus psyllid Diaphorina citri (Hemiptera: Liviidae)

scientific article

Differences in the composition of vaginal microbial communities found in healthy Caucasian and black women.

scientific article published on 10 May 2007

Draft Genome Sequence of Cercospora arachidicola, Causal Agent of Early Leaf Spot in Peanuts

scientific article

Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing

scientific article published on 17 October 2017

Estimation of selection intensity under overdominance by Bayesian methods

scientific article

Evaluating the performance of likelihood methods for detecting population structure and migration

scientific article published in April 2004

Evaluation of disinfectants to prevent mechanical transmission of viruses and a viroid in greenhouse tomato production

scientific article

Evaluation of methods for the extraction and purification of DNA from the human microbiome

scientific article

Horizontal Gene Transfer Is the Main Driver of Antimicrobial Resistance in Broiler Chicks Infected with Salmonella enterica Serovar Heidelberg

scientific article published on 24 August 2021

Impact of oral probiotic Lactobacillus acidophilus vaccine strains on the immune response and gut microbiome of mice

scientific article published on 12 December 2019

Increased rectal microbial richness is associated with the presence of colorectal adenomas in humans

scientific article

Influence of brown stink bug feeding, planting date and sampling time on common smut infection of maize.

scientific article published on 20 August 2014

MEGARes: an antimicrobial resistance database for high throughput sequencing.

scientific article

Maize death acids, 9-lipoxygenase-derived cyclopente(a)nones, display activity as cytotoxic phytoalexins and transcriptional mediators.

scientific article

Mi-1-Mediated Nematode Resistance in Tomatoes is Broken by Short-Term Heat Stress but Recovers Over Time

scientific article published in June 2015

Microbiota of the seminal fluid from healthy and infertile men.

scientific article published on 29 August 2013

Modeling the impact of periodic bottlenecks, unidirectional mutation, and observational error in experimental evolution.

scientific article published on 20 December 2004

Molecular characterization of mucosal adherent bacteria and associations with colorectal adenomas

scientific article

Patchy distribution of flexible genetic elements in bacterial populations mediates robustness to environmental uncertainty

scientific article published on 08 July 2008

Performance-based selection of likelihood models for phylogeny estimation

scientific article published in October 2003

Recent advances in understanding the microbiology of the female reproductive tract and the causes of premature birth

scientific article

Shifts in the host range of a promiscuous plasmid through parallel evolution of its replication initiation protein

scientific article

Statistical methods for characterizing diversity of microbial communities by analysis of terminal restriction fragment length polymorphisms of 16S rRNA genes

scientific article

Subtyping of Salmonella enterica Subspecies I Using Single-Nucleotide Polymorphisms in Adenylate Cyclase

scientific article published on April 2016

Temporal dynamics of the human vaginal microbiota

scientific article published in May 2012

The daily dynamics of cystic fibrosis airway microbiota during clinical stability and at exacerbation

scientific article

The genetics of adaptation for eight microvirid bacteriophages

scientific article published on 20 August 2009

The role of clonal interference in the evolutionary dynamics of plasmid-host adaptation

scientific article

Vaginal microbiome of reproductive-age women

scientific article published on 3 June 2010

Whole-Genome Sequencing and Concordance Between Antimicrobial Susceptibility Genotypes and Phenotypes of Bacterial Isolates Associated with Bovine Respiratory Disease.

scientific article published on 24 July 2017

mcaGUI: microbial community analysis R-Graphical User Interface (GUI).

scientific article

List of works by Zaid Abdo

A comparative study of the gut microbiome in Egyptian patients with Type I and Type II diabetes

A step toward barcoding life: a model-based, decision-theoretic method to assign genes to preexisting species groups

Accounting for Uncertainty in the Tree Topology Has Little Effect on the Decision-Theoretic Approach to Model Selection in Phylogeny Estimation

Advances in the use of terminal restriction fragment length polymorphism (T-RFLP) analysis of 16S rRNA genes to characterize microbial communities.

An Aptamer-Based Proteomic Analysis of Plasma from Cats (Felis catus) with Clinical Feline Infectious Peritonitis

Applications of the FIV Model to Study HIV Pathogenesis

Association between Trichomonas vaginalis and vaginal bacterial community composition among reproductive-age women

Associations between Escherichia coli O157 shedding and the faecal microbiota of dairy cows

Associations between sexual habits, menstrual hygiene practices, demographics and the vaginal microbiome as revealed by Bayesian network analysis.

Bacterial diversity in a glacier foreland of the high Arctic

Bacterial succession in a glacier foreland of the High Arctic.

Caring about trees in the forest: incorporating frailty in risk analysis for personalized medicine

Characterization of the diversity and temporal stability of bacterial communities in human milk

Combining mathematical models and statistical methods to understand and predict the dynamics of antibiotic-sensitive mutants in a population of resistant bacteria during experimental evolution

Complete Genome Sequences of Eight Streptococcus equi subsp. <i>zooepidemicus</i> Strains Isolated from Mares in Estrus with Endometritis

Contrasting Codon Usage Patterns and Purifying Selection at the Mating Locus in Putatively Asexual Alternaria Fungal Species ⬇️

Derivation of chicken induced pluripotent stem cells tolerant to Newcastle disease virus-induced lysis through multiple rounds of infection

Determining the distribution of fitness effects using a generalized Beta-Burr distribution

Differences in stylet sheath occurrence and the fibrous ring (sclerenchyma) between xCitroncirus plants relatively resistant or susceptible to adults of the Asian citrus psyllid Diaphorina citri (Hemiptera: Liviidae)

Differences in the composition of vaginal microbial communities found in healthy Caucasian and black women.

Draft Genome Sequence of Cercospora arachidicola, Causal Agent of Early Leaf Spot in Peanuts

Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing

Estimation of selection intensity under overdominance by Bayesian methods

Evaluating the performance of likelihood methods for detecting population structure and migration

Evaluation of disinfectants to prevent mechanical transmission of viruses and a viroid in greenhouse tomato production

Evaluation of methods for the extraction and purification of DNA from the human microbiome

Horizontal Gene Transfer Is the Main Driver of Antimicrobial Resistance in Broiler Chicks Infected with Salmonella enterica Serovar Heidelberg

Impact of oral probiotic Lactobacillus acidophilus vaccine strains on the immune response and gut microbiome of mice

Increased rectal microbial richness is associated with the presence of colorectal adenomas in humans

Influence of brown stink bug feeding, planting date and sampling time on common smut infection of maize.

MEGARes: an antimicrobial resistance database for high throughput sequencing.

Maize death acids, 9-lipoxygenase-derived cyclopente(a)nones, display activity as cytotoxic phytoalexins and transcriptional mediators.

Mi-1-Mediated Nematode Resistance in Tomatoes is Broken by Short-Term Heat Stress but Recovers Over Time

Microbiota of the seminal fluid from healthy and infertile men.

Modeling the impact of periodic bottlenecks, unidirectional mutation, and observational error in experimental evolution.

Molecular characterization of mucosal adherent bacteria and associations with colorectal adenomas

Patchy distribution of flexible genetic elements in bacterial populations mediates robustness to environmental uncertainty

Performance-based selection of likelihood models for phylogeny estimation

Recent advances in understanding the microbiology of the female reproductive tract and the causes of premature birth

Shifts in the host range of a promiscuous plasmid through parallel evolution of its replication initiation protein

Statistical methods for characterizing diversity of microbial communities by analysis of terminal restriction fragment length polymorphisms of 16S rRNA genes

Subtyping of Salmonella enterica Subspecies I Using Single-Nucleotide Polymorphisms in Adenylate Cyclase

Temporal dynamics of the human vaginal microbiota

The daily dynamics of cystic fibrosis airway microbiota during clinical stability and at exacerbation

The genetics of adaptation for eight microvirid bacteriophages

The role of clonal interference in the evolutionary dynamics of plasmid-host adaptation

Vaginal microbiome of reproductive-age women

Whole-Genome Sequencing and Concordance Between Antimicrobial Susceptibility Genotypes and Phenotypes of Bacterial Isolates Associated with Bovine Respiratory Disease.

mcaGUI: microbial community analysis R-Graphical User Interface (GUI).