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List of works by Yang Zhang

A Protocol for Computer-Based Protein Structure and Function Prediction ⬇️

scientific article published on November 3, 2011

A Variational Model for Oligomer-Formation Process of GNNQQNY Peptide from Yeast Prion Protein Sup35 ⬇️

scientific article published on February 7, 2012

A lattice-gas model for amyloid fibril aggregation ⬇️

scientific article published on June 8, 2011

ATPbind: Accurate Protein-ATP Binding Site Prediction by Combining Sequence-Profiling and Structure-Based Comparisons.

scientific article published on 23 January 2018

Ab Initio Structural Modeling of and Experimental Validation for Chlamydia trachomatis Protein CT296 Reveal Structural Similarity to Fe(II) 2-Oxoglutarate-Dependent Enzymes ⬇️

scientific article published on September 30, 2011

Ab Initio structure prediction for Escherichia coli: towards genome-wide protein structure modeling and fold assignment ⬇️

scientific article published on January 1, 2013

Ab initio protein structure assembly using continuous structure fragments and optimized knowledge‐based force field ⬇️

scientific article published on April 13, 2012

Ab initio protein structure prediction on a genomic scale: application to the Mycoplasma genitalium genome

scientific article

An image-based multi-label human protein subcellular localization predictor (iLocator) reveals protein mislocalizations in cancer tissues ⬇️

scientific article published on 04 June 2013

Approaches to ab initio molecular replacement of α-helical transmembrane proteins.

scientific article published on 22 November 2017

Assembling multidomain protein structures through analogous global structural alignments

scientific article published on 24 July 2019

BSP‐SLIM: A blind low‐resolution ligand‐protein docking approach using predicted protein structures ⬇️

scientific article published on October 4, 2011

Blinded Testing of Function Annotation for uPE1 Proteins by I-TASSER/COFACTOR Pipeline Using the 2018-2019 Additions to neXtProt and the CAFA3 Challenge

scientific article published on 18 October 2019

Computational Design of Peptides to Block Binding of the SARS-CoV-2 Spike Protein to Human ACE2

scientific article published on 31 March 2020

Computational Protein Design and Large-Scale Assessment by I-TASSER Structure Assembly Simulations ⬇️

scientific article published on February 15, 2011

Decoding the link of microbiome niches with homologous sequences enables accurately targeted protein structure prediction

scientific article published in 2021

Deep-learning contact-map guided protein structure prediction in CASP13

scientific article published on 14 August 2019

Detecting distant-homology protein structures by aligning deep neural-network based contact maps

scientific article published on 17 October 2019

Dissecting the Kinetic Process of Amyloid Fiber Formation through Asymptotic Analysis ⬇️

scientific article published on December 13, 2011

DockRMSD: an open-source tool for atom mapping and RMSD calculation of symmetric molecules through graph isomorphism

scientific article published on 07 June 2019

Ensembling multiple raw coevolutionary features with deep residual neural networks for contact-map prediction in CASP13

scientific article published on 22 August 2019

Fitting Low-Resolution Protein Structures into Cryo-EM Density Maps by Multiobjective Optimization of Global and Local Correlations

scientific article published on 05 January 2021

Fueling ab initio folding with marine metagenomics enables structure and function predictions of new protein families

scientific article published on 01 November 2019

Functions of Essential Genes and a Scale-Free Protein Interaction Network Revealed by Structure-Based Function and Interaction Prediction for a Minimal Genome

scientific article published on 04 January 2021

High-accuracy prediction of transmembrane inter-helix contacts and application to GPCR 3D structure modeling ⬇️

scientific article published on August 14, 2013

Identifying the Zoonotic Origin of SARS-CoV-2 by Modeling the Binding Affinity between the Spike Receptor-Binding Domain and Host ACE2

scientific article published on 11 November 2020

Identifying zoonotic origin of SARS-CoV-2 by modeling the binding affinity between Spike receptor-binding domain and host ACE2

scientific article published on 11 September 2020

Improving Protein Template Recognition by Using Small-Angle X-Ray Scattering Profiles ⬇️

scientific article published on December 7, 2011

Improving deep learning protein monomer and complex structure prediction using DeepMSA2 with huge metagenomics data

scientific article published in 2024

Improving the Physical Realism and Structural Accuracy of Protein Models by a Two-Step Atomic-Level Energy Minimization ⬇️

scientific article published on November 15, 2011

Interplay of I‐TASSER and QUARK for template‐based and ab initio protein structure prediction in CASP10 ⬇️

scientific article published on August 31, 2013

MR-REX: molecular replacement by cooperative conformational search and occupancy optimization on low-accuracy protein models

scientific article published on 08 June 2018

Mapping Monomeric Threading to Protein–Protein Structure Prediction ⬇️

scientific article published on February 27, 2013

Parkin, A Top Level Manager in the Cells Sanitation Department ⬇️

scientific article published on April 18, 2011

Potential of Three Ethnomedicinal Plants as Antisickling Agents.

scientific article

Predicting nucleic acid binding interfaces from structural models of proteins ⬇️

scientific article published on November 16, 2011

Prediction of Inhibitory Activity of Epidermal Growth Factor Receptor Inhibitors Using Grid Search-Projection Pursuit Regression Method ⬇️

scientific article published on July 21, 2011

Progressive and accurate assembly of multi-domain protein structures from cryo-EM density maps

scientific article published on 16 October 2020

Protein Structure and Sequence Reanalysis of 2019-nCoV Genome Refutes Snakes as Its Intermediate Host and the Unique Similarity between Its Spike Protein Insertions and HIV-1

scientific article published on 24 March 2020

Protein structural features predict responsiveness to pharmacological chaperone treatment for three lysosomal storage disorders

scientific article published on 16 September 2021

Protein-Protein Complex Structure Predictions by Multimeric Threading and Template Recombination ⬇️

scientific article published on July 13, 2011

Rational Design of SARS-CoV-2 Spike Glycoproteins To Increase Immunogenicity By T Cell Epitope Engineering

scientific article published on 14 August 2020

Recognizing protein-ligand binding sites by global structural alignment and local geometry refinement ⬇️

scientific article published on May 3, 2012

Segment assembly, structure alignment and iterative simulation in protein structure prediction ⬇️

scientific article published on April 15, 2013

Structure and Protein Interaction-Based Gene Ontology Annotations Reveal Likely Functions of Uncharacterized Proteins on Human Chromosome 17

article

TOUCHSTONE II: a new approach to ab initio protein structure prediction

scientific article

TOUCHSTONE: a unified approach to protein structure prediction.

scientific article

TOUCHSTONEX: protein structure prediction with sparse NMR data.

scientific article

Template-based and free modeling of I-TASSER and QUARK pipelines using predicted contact maps in CASP12.

scientific article published on 30 October 2017

The structure of the large regulatory α subunit of phosphorylase kinase examined by modeling and hydrogen-deuterium exchange.

scientific article

ThreaDom: extracting protein domain boundary information from multiple threading alignments ⬇️

scientific article published on July 1, 2013

Toward optimal fragment generations for ab initio protein structure assembly ⬇️

scientific article published on October 16, 2012

Toward the Accuracy and Speed of Protein Side-Chain Packing: A Systematic Study on Rotamer Libraries

scientific article published on 31 December 2019

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