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List of works by Mark Thompson

A Generic Workflow for the Data FAIRification Process

article published in 2019

A Nanopublishing Architecture for Biomedical Data

article by Pedro Sernadela et al published 2014 in Advances in Intelligent Systems and Computing

A promoter-level mammalian expression atlas

scientific article

A putative role for genome-wide epigenetic regulatory mechanisms in Huntington’s disease: A computational assessment

Addendum: The FAIR Guiding Principles for scientific data management and stewardship

article by Mark D Wilkinson et al published 19 March 2019 in Scientific Data

Applying linked data approaches to pharmacology: Architectural decisions and implementation ⬇️

scientific article

BioHackathon 2015: Semantics of data for life sciences and reproducible research

scientific article published on 24 February 2020

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services

scientific article

Consent Codes: Upholding Standard Data Use Conditions

scientific article

Edge: a framework for developing collective understanding [project]

Explain your data by Concept Profile Analysis Web Services

article published in 2014

FAIR Principles: Interpretations and Implementation Considerations

scholarly article

Finding Novel Associations Across Domains Using Linked Data: a Case Study on Genetic Variants Disrupting Transcription Start Sites ⬇️

From Peer-Reviewed to Peer-Reproduced in Scholarly Publishing: The Complementary Roles of Data Models and Workflows in Bioinformatics

scientific article

From peer-reviewed to peer-reproduced: a role for data standards, models and computational workflows in scholarly publishing

Gateways to the FANTOM5 promoter level mammalian expression atlas

scientific article

Interoperability and FAIRness through a novel combination of Web technologies ⬇️

scientific article (publication date: 24 April 2017)

Interoperability and FAIRness through a novel combination of Web technologies

Interoperability and FAIRness through a novel combination of Web technologies

Interoperability and FAIRness through a novel combination of Web technologies

Intrusiveness Management for Focused, Efficient, and Enjoyable Activities

Knowledge.Bio: A Web application for exploring, building and sharing webs of biomedical relationships mined from PubMed

Linked Registries: Connecting Rare Diseases Patient Registries through a Semantic Web Layer.

scientific article published on 29 October 2017

Making FAIR Easy with FAIR Tools: From Creolization to Convergence

article by Mark Thompson et al published 1 November 2019 in Data Intelligence

Multidisciplinary Collaboration to Facilitate Hypotheses Generation in Huntington's Disease

Nanopublications for Exposing Experimental Data in the Life-sciences: A Huntington's Disease Case Study ⬇️

research article

Nanopublications for exposing experimental data in the life-sciences: a Huntington's Disease case study

scientific article

Placing Landmarks in the Knowledge Space: A Web Tool for Crowd-sourcing Landmark Publications to Benchmark Text-mining Predictions ⬇️

Preserving sequence annotations across reference sequences

scientific article

Registries of Domain-Relevant Semantic Reference Models Help Bootstrap Interoperability in Domains with Fragmented Data Resources ⬇️

article by Marco Roos et al published 19 February 2017 in Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences

Structuring research methods and data with the research object model: genomics workflows as a case study

scientific article

The FAIR Guiding Principles for scientific data management and stewardship

scientific article (publication date: 15 March 2016)

The Implicitome: A Resource for Rationalizing Gene-Disease Associations

scientific article

The RD-Connect Registry & Biobank Finder: a tool for sharing aggregated data and metadata among rare disease researchers

scientific article

The “A” of FAIR – As Open as Possible, as Closed as Necessary

article by Annalisa Landi et al published 1 November 2019 in Data Intelligence

Weaving the Pervasive Information Fabric

Wikidata as an intuitive resource towards semantic data modeling in data FAIRification ⬇️

scholarly article by Annika Jacobsen published in December 2018

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