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List of works by David R Goodlett

A Deep Proteome Analysis Identifies the Complete Secretome as the Functional Unit of Human Cardiac Progenitor Cells

scientific article

A Francisella mutant in lipid A carbohydrate modification elicits protective immunity.

scientific article

A Qit-q-Tof mass spectrometer for two-dimensional tandem mass spectrometry

scientific article published on 01 January 2007

A Review of Tandem Mass Spectrometry Characterization of Adenosine Diphosphate-Ribosylated Peptides ⬇️

scientific article published on June 12, 2011

A combined dataset of human cerebrospinal fluid proteins identified by multi-dimensional chromatography and tandem mass spectrometry

scientific article published on February 2007

A microcapillary trap cartridge-microcapillary high-performance liquid chromatography electrospray ionization emitter device capable of peptide tandem mass spectrometry at the attomole level on an ion trap mass spectrometer with automated routine op

scientific article

A pseudo-atomic model for the capsid shell of bacteriophage lambda using chemical cross-linking/mass spectrometry and molecular modeling

scientific article published on 25 June 2013

A statistical approach to peptide identification from clustered tandem mass spectrometry data

scientific article

A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS.

scientific article published on 9 June 2006

A type VI secretion system of Pseudomonas aeruginosa targets a toxin to bacteria

scientific journal article

A widespread bacterial type VI secretion effector superfamily identified using a heuristic approach

scientific article

Acquisition of iron by alkaliphilic bacillus species.

scientific article

Advances in protein complex analysis by chemical cross-linking coupled with mass spectrometry (CXMS) and bioinformatics.

scientific article

Advances in proteomic prostate cancer biomarker discovery

scientific article published on 14 April 2010

An ambient detection system for visualization of charged particles generated with ionization methods at atmospheric pressure

scientific article

An interbacterial NAD(P)(+) glycohydrolase toxin requires elongation factor Tu for delivery to target cells

scientific journal article

An six-amino acid motif in the alpha3 domain of MICA is the cancer therapeutic target to inhibit shedding

scientific article

Analysis of Phosphopeptides by {micro}LC-ESI-MS/MS

scientific article published on 01 November 2007

Analysis of alpha-synuclein-associated proteins by quantitative proteomics

scientific article published in July 2004

Analysis of the plasma proteome using iTRAQ and TMT-based Isobaric labeling

scientific article published on 9 November 2017

Approaching complete peroxisome characterization by gas-phase fractionation

scientific article published in September 2002

Assessing bias in experiment design for large scale mass spectrometry-based quantitative proteomics

scientific article (publication date: October 2007)

Attomole level capillary electrophoresis-mass spectrometric protein analysis using 5 .mu.m i.d. capillaries

article

Automated lipid A structure assignment from hierarchical tandem mass spectrometry data

scientific article

Autopiquer - a Robust and Reliable Peak Detection Algorithm for Mass Spectrometry

scientific article published on 6 December 2016

Bioengineering radioresistance by overproduction of RPA, a mammalian-type single-stranded DNA-binding protein, in a halophilic archaeon

scientific article

Capillary electrophoresis/mass spectrometry

scholarly article by Richard D. Smith et al published July 1993 in Analytical Chemistry

Characterization of hepatic glutathione S-transferases in coho salmon (Oncorhynchus kisutch).

scientific article published on 24 November 2006

Characterization of microsomal fraction proteome in human lymphoblasts reveals the down-regulation of galectin-1 by interleukin-12.

scientific article published in December 2005

Characterization of protein cross-links via mass spectrometry and an open-modification search strategy.

scientific article published on 24 October 2008

Characterization of proteome of human cerebrospinal fluid

scientific article published in January 2006

Chemical cross-linking and mass spectrometry as a low-resolution protein structure determination technique.

scientific article

Chemical cross-linking, mass spectrometry, and in silico modeling of proteasomal 20S core particles of the haloarchaeon Haloferax volcanii

scientific article

Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction

scientific article published on 18 February 2010

Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains.

scientific article published on January 2007

Comparison of a Salmonella typhimurium proteome defined by shotgun proteomics directly on an LTQ-FT and by proteome pre-fractionation on an LCQ-DUO.

scientific article published on June 2006

Comparison of a label-free quantitative proteomic method based on peptide ion current area to the isotope coded affinity tag method.

scientific article published on 17 April 2008

Comparison of data acquisition strategies on quadrupole ion trap instrumentation for shotgun proteomics

scientific article

Comparison of pancreas juice proteins from cancer versus pancreatitis using quantitative proteomic analysis

scientific article published on January 2007

Comprehensive glycosylation profiling of IgG and IgG-fusion proteins by top-down MS with multiple fragmentation techniques.

scientific article published on 17 October 2015

Comprehensive structure characterization of lipid A extracted from Yersinia pestis for determination of its phosphorylation configuration

scientific article published on 25 January 2010

Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach

scientific article

Covalent Modification and Time-Dependent Inhibition of Human CYP2E1 by themeta-Isomer of Acetaminophen ⬇️

scientific article published on May 21, 2012

Cross-linking mass spectrometry and mutagenesis confirm the functional importance of surface interactions between CYP3A4 and holo/apo cytochrome b(5).

scientific article published on 14 November 2012

DJ-1 isoforms in whole blood as potential biomarkers of Parkinson disease

scientific article

Data-independent proteomic screen identifies novel tamoxifen agonist that mediates drug resistance

scientific article

Dataset describing the development, optimization and application of SRM/MRM based targeted proteomics strategy for quantification of potential biomarkers of EGFR TKI sensitivity.

scientific article

Deciphering diatom biochemical pathways via whole-cell proteomics.

scientific article published on June 2009

Detecting cross-linked peptides by searching against a database of cross-linked peptide pairs

scientific article

Detection of Carbofuran-Protein Adducts in Serum of Occupationally Exposed Pesticide Factory Workers in Pakistan

scientific article

Determination and comparison of the Francisella tularensis subsp.novicida U112 proteome to other bacterial proteomes

scientific article published on 02 April 2008

Determination of pyrophosphorylated forms of lipid A in Gram-negative bacteria using a multivaried mass spectrometric approach

scientific article

Diatom proteomics reveals unique acclimation strategies to mitigate Fe limitation

scientific article

Droplet delivery and nebulization system using surface acoustic wave for mass spectrometry

scientific article published on 06 August 2020

Dynamic changes in the subcellular distribution of Gpd1p in response to cell stress.

scientific article

Early evolutionary loss of the lipid A modifying enzyme PagP resulting in innate immune evasion in Yersinia pestis

scientific article published on 31 August 2020

Effect of artemisinin derivatives on apoptosis and cell cycle in prostate cancer cells

scientific article

Effects of transferrin conjugates of artemisinin and artemisinin dimer on breast cancer cell lines

scientific article published on January 1, 2013

Electron capture in spin-trap capped peptides. An experimental example of ergodic dissociation in peptide cation-radicals

scientific article published on 16 November 2006

Evaluation of P450 Inhibition and Induction by Artemisinin Antimalarials in Human Liver Microsomes and Primary Human Hepatocytes ⬇️

scientific article published on June 7, 2012

Evidence for the presence of disease-perturbed networks in prostate cancer cells by genomic and proteomic analyses: a systems approach to disease

scientific article

Experimental Protein Mixture for Validating Tandem Mass Spectral Analysis

scientific article published on 01 January 2002

Exploration of the normal human bronchoalveolar lavage fluid proteome ⬇️

scientific article published on April 1, 2008

Faster, Quantitative, and Accurate Precursor Acquisition Independent From Ion Count ⬇️

scientific article published on February 22, 2011

Fragmentation-free LC-MS can identify hundreds of proteins

scientific article published on 06 December 2010

Gene expression analyzed by high-resolution state array analysis and quantitative proteomics: response of yeast to mating pheromone

scientific article published on 6 February 2004

Genetic Variation Shapes Protein Networks Mainly through Non-transcriptional Mechanisms ⬇️

scientific article published on September 6, 2011

Genetic basis of proteome variation in yeast

scientific article

Genetically distinct pathways guide effector export through the type VI secretion system

scientific journal article

Genome-specific gas-phase fractionation strategy for improved shotgun proteomic profiling of proteotypic peptides

scientific article published on 23 January 2008

Global Analysis of Condition-specific Subcellular Protein Distribution and Abundance ⬇️

scientific article published on January 24, 2013

Glycosylation characterization of therapeutic mAbs by top- and middle-down mass spectrometry.

scientific article published on 24 November 2015

Growth phenotypes of Pseudomonas aeruginosa lasR mutants adapted to the airways of cystic fibrosis patients

scientific article published on April 2007

Human Toll-like receptor 4 responses to P. gingivalis are regulated by lipid A 1- and 4'-phosphatase activities

scientific article

Human symbionts inject and neutralize antibacterial toxins to persist in the gut

scientific article

Hyper-phosphorylation of Sequestosome-1 Distinguishes Resistance to Cisplatin in Patient Derived High Grade Serous Ovarian Cancer Cells.

scientific article

ICAT-based comparative proteomic analysis of non-replicating persistent Mycobacterium tuberculosis

scientific article published on 20 December 2005

Identification and characterization of a drug-sensitive strain enables puromycin-based translational assays in Saccharomyces cerevisiae

scientific article

Identification and characterization of biomarkers of organophosphorus exposures in humans

scientific article

Identification and type III-dependent secretion of the Yersinia pestis insecticidal-like proteins

scientific article published on June 2007

Identification of a Novel Phosphorylation Site, Ser-170, as a Regulator of Bad Pro-apoptotic Activity ⬇️

scientific article published on November 20, 2001

Identification of phosphorylation sites using microimmobilized metal affinity chromatography.

scientific article

Identification of secreted glycoproteins of human prostate and bladder stromal cells by comparative quantitative proteomics

scientific article

Identification of the active site of DS-epimerase 1 and requirement of N-glycosylation for enzyme function

scientific article

Identification of the interactions between cytochrome P450 2E1 and cytochrome b5 by mass spectrometry and site-directed mutagenesis

scientific article published on 05 May 2006

Identification, cloning, expression, and purification of Francisella lpp3: an immunogenic lipoprotein.

scientific article

Identifying and tracking proteins through the marine water column: Insights into the inputs and preservation mechanisms of protein in sediments ⬇️

scientific article (publication date: 15 April 2012)

Improving mass and liquid chromatography based identification of proteins using bayesian scoring

scientific article

Increased quantitative proteome coverage with (13)C/(12)C-based, acid-cleavable isotope-coded affinity tag reagent and modified data acquisition scheme

scientific article

Increasing information from shotgun proteomic data by accounting for misassigned precursor ion masses

scientific article

Induced sputum proteome in healthy subjects and asthmatic patients

scientific article

Initial proteome analysis of model microorganism Haemophilus influenzae strain Rd KW20.

scientific article

Integrated genomic and proteomic analyses of gene expression in Mammalian cells

scientific article published on 6 July 2004

Interactions between Casein kinase Iepsilon (CKIepsilon) and two substrates from disparate signaling pathways reveal mechanisms for substrate-kinase specificity

scientific article

Interactions between CusF and CusB identified by NMR spectroscopy and chemical cross-linking coupled to mass spectrometry

scientific article

Interactions of the transmembrane polymeric rings of the Salmonella enterica serovar Typhimurium type III secretion system

scientific article

Kin cell lysis is a danger signal that activates antibacterial pathways of Pseudomonas aeruginosa

scientific article

LPS remodeling is an evolved survival strategy for bacteria.

scientific article

Label-Free Quantitation for Clinical Proteomics.

scientific article

Lack of in vitro and in vivo recognition of Francisella tularensis subspecies lipopolysaccharide by Toll-like receptors

scientific article

Landscape of the SOX2 protein–protein interactome ⬇️

scientific article published on January 31, 2011

Large precursor tolerance database search - a simple approach for estimation of the amount of spectra with precursor mass shifts in proteomic data

scientific article

Large-scale evaluation of quantitative reproducibility and proteome coverage using acid cleavable isotope coded affinity tag mass spectrometry for proteomic profiling.

scientific article published in April 2005

Lipid raft proteins and their identification in T lymphocytes.

scientific article published in January 2004

Mapping PARP-1 auto-ADP-ribosylation sites by liquid chromatography-tandem mass spectrometry

scientific article published on 18 March 2013

Mass Spectrometric Characterization of Proteins Extracted from Jurkat T Cell Detergent-Resistant Membrane Domains

Mass Spectrometry-Based Serum Proteomics for Biomarker Discovery and Validation

scientific article published in January 2017

Mass Spectrometry-based Structural Analysis and Systems Immunoproteomics Strategies for Deciphering the Host Response to Endotoxin

article

Mass spectrometry based targeted protein quantification: methods and applications

scientific article published on February 2009

Metabolic capabilities and systems fluctuations in Haloarcula marismortui revealed by integrative genomics and proteomics analyses

scientific article (publication date: July 2011)

MglA regulates Francisella tularensis subsp. novicida (Francisella novicida) response to starvation and oxidative stress

scientific article

Minimize the detection of false positives by the software program DetectShift for 18O-labeled cross-linked peptide analysis

scientific article published on January 2008

Mining the acute respiratory distress syndrome proteome: identification of the insulin-like growth factor (IGF)/IGF-binding protein-3 pathway in acute lung injury

scientific article

Mitochondrial dysfunction in NnaD mutant flies and Purkinje cell degeneration mice reveals a role for Nna proteins in neuronal bioenergetics

scientific journal article

Molecular and Biological Characterization of Streptococcal SpyA-mediated ADP-ribosylation of Intermediate Filament Protein Vimentin ⬇️

scientific article published on June 15, 2012

Multiplex targeted proteomic assay for biomarker detection in plasma: a pancreatic cancer biomarker case study

scientific article published on 8 February 2012

Multiplexed and data-independent tandem mass spectrometry for global proteome profiling.

scientific article

New structural proteins of Halobacterium salinarum gas vesicle revealed by comparative proteomics analysis

scientific article published on 25 January 2011

Normalization of NAD+ Redox Balance as a Therapy for Heart Failure

scientific article published on 3 August 2016

Observation of Duplex DNA-Drug Noncovalent Complexes by Electrospray Ionization Mass Spectrometry

scientific article published in 1994

Observation of a noncovalent ribonuclease S-protein/S-peptide complex by electrospray ionization mass spectrometry

scientific article published in 1993

Offline Micro-IMAC Enrichment of Phosphoproteins

scientific article published on 01 November 2007

On the Relevance of Peptide Sequence Permutations in Shotgun Proteomics Studies ⬇️

scientific article published on 05 April 2011

On the benefits of acquiring peptide fragment ions at high measured mass accuracy

scientific article published on 4 March 2008

On the use of hydrogen/deuterium exchange mass spectrometry data to improve de novo protein structure prediction

scientific article published on 01 February 2009

Optimization of reversed-phase microcapillary liquid chromatography for quantitative proteomics

scientific article published in April 2004

Pancreatic cancer proteome: the proteins that underlie invasion, metastasis, and immunologic escape

scientific article published on October 2005

Pathogen Identification Direct From Polymicrobial Specimens Using Membrane Glycolipids

scientific article published in Scientific Reports

Plasticity of Cytochrome P450 2B4 as Investigated by Hydrogen-Deuterium Exchange Mass Spectrometry and X-ray Crystallography ⬇️

scientific article published on September 28, 2010

Precursor acquisition independent from ion count: how to dive deeper into the proteomics ocean.

scientific article

Precursor ion independent algorithm for top-down shotgun proteomics

scientific article published on 13 August 2009

Preparation and Use of an Integrated Microcapillary HPLC Column and ESI Device for Proteomic Analysis ⬇️

scientific article published on 01 May 2007

Pro-CrossLink. Software tool for protein cross-linking and mass spectrometry

scientific article published on 01 April 2006

Producing Isotopic Distribution Models for Fully Apodized Absorption Mode FT-MS

scientific article published on 15 May 2015

Protein identification using top-down.

scientific article

Protein structure modeling

scientific article

Proteins That Underlie Neoplastic Progression of Ulcerative Colitis

scientific article

Proteome analysis of Halobacterium sp. NRC-1 facilitated by the biomodule analysis tool BMSorter

scientific article published on 23 February 2006

Proteome analysis of tissues by mass spectrometry

scientific article published on 07 August 2019

Proteomic Classification of Acute Leukemias by Alignment-Based Quantitation of LC–MS/MS Data Sets ⬇️

scientific article published on September 11, 2012

Proteomic analysis of Pseudomonas aeruginosa grown under magnesium limitation

article

Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1.

scientific article published on 18 July 2003

Proteomic analysis of human prostasomes ⬇️

scientific article published on July 1, 2003

Proteomic analysis of the intestinal epithelial cell response to enteropathogenic Escherichia coli

scientific article published on 26 February 2004

Proteomic approach to studying Parkinson's disease

scientific article published on June 2004

Proteomic biomarker discovery in cerebrospinal fluid for neurodegenerative diseases.

scientific article

Proteomic identification of potential susceptibility factors in drug-induced liver disease

scientific article published in June 2005

Proteomic landscape of bronchoalveolar lavage fluid in human immunodeficiency virus infection

scientific article published on 8 November 2013

Proteomic profiling of bronchoalveolar lavage fluid in critically ill patients with ventilator-associated pneumonia

scientific article

Proteomics on Fixed Tissue Specimens - A Review

scientific article published on April 2009

Proteomics without polyacrylamide: qualitative and quantitative uses of tandem mass spectrometry in proteome analysis

scientific article

Quantitative glycoproteomics analysis reveals changes in N-glycosylation level associated with pancreatic ductal adenocarcinoma

scientific article

Quantitative mass spectrometry analysis using PAcIFIC for the identification of plasma diagnostic biomarkers for abdominal aortic aneurysm

scientific article

Quantitative mass spectrometry reveals a role for the GTPase Rho1p in actin organization on the peroxisome membrane

scientific article

Quantitative protein profile comparisons using the isotope-coded affinity tag method

scientific article published on February 2004

Quantitative proteomic analysis indicates increased synthesis of a quinolone by Pseudomonas aeruginosa isolates from cystic fibrosis airways

scholarly article

Quantitative proteomic analysis of Myc oncoprotein function

scientific article published on October 2002

Quantitative proteomic analysis of age-related changes in human cerebrospinal fluid

scientific article published in February 2005

Quantitative proteomic analysis of chromatin-associated factors

scientific article published on 01 July 2003

Quantitative proteomic analysis of proteins released by neoplastic prostate epithelium

scientific article published on January 2004

Quantitative proteomic characterization and comparison of T helper 17 and induced regulatory T cells.

scientific article published on 31 May 2018

Quantitative proteomic profiling of pancreatic cancer juice

scientific article

Quantitative proteomics analysis reveals that proteins differentially expressed in chronic pancreatitis are also frequently involved in pancreatic cancer

scientific article published on 12 May 2007

Quantitative proteomics investigation of pancreatic intraepithelial neoplasia

scientific article published on April 2009

Quantitative targeted proteomic analysis of potential markers of tyrosine kinase inhibitor (TKI) sensitivity in EGFR mutated lung adenocarcinoma

scientific article

RACK1 associates with muscarinic receptors and regulates M(2) receptor trafficking

scientific article

Rapid Food Product Analysis by Surface Acoustic Wave Nebulization Coupled Mass Spectrometry

scholarly article by Thomas Schneider et al published September 2018 in Food Analytical Methods

Rapid Lipid A Structure Determination via Surface Acoustic Wave Nebulization and Hierarchical Tandem Mass Spectrometry Algorithm

scientific article

Reduced elution speed detection for capillary electrophoresis/mass spectrometry

Rules governing protein identification by mass spectrometry

scientific article published on 01 January 2005

Salivary Tau Species are Potential Biomarkers of Alzheimer's Disease ⬇️

scientific article published on January 1, 2011

Salivary α-synuclein and DJ-1: potential biomarkers for Parkinson's disease.

scientific article published on 24 February 2011

Screen-printed digital microfluidics combined with surface acoustic wave nebulization for hydrogen-deuterium exchange measurements.

scientific article published on 21 December 2015

Sequence assignment of ADP-ribosylated peptides is facilitated as peptide length increases

scientific article published on 01 August 2010

Serum Proteomic Profiling to Identify Biomarkers of Premature Carotid Atherosclerosis.

scientific article

Serum proteomes distinguish children developing type 1 diabetes in a cohort with HLA-conferred susceptibility

scientific article published on 23 January 2015

Shotgun collision-induced dissociation of peptides using a time of flight mass analyzer

scientific article

Shotgun proteomic analysis of a chromatophore-enriched preparation from the purple phototrophic bacterium Rhodopseudomonas palustris

scientific article published in January 2003

Shotgun proteomics as a viable approach for biological discovery in the Pacific oyster

scientific article published on 17 May 2013

Shotgun proteomics implicates extracellular matrix proteins and protease systems in neuronal development induced by astrocyte cholinergic stimulation

scientific article published on 10 December 2008

Site-specific activity of the acyltransferases HtrB1 and HtrB2 in Pseudomonas aeruginosa lipid A biosynthesis

scientific article

Stromal mesenchyme cell genes of the human prostate and bladder

scientific article

Structural derivation of lipid A from Cronobacter sakazakii using tandem mass spectrometry

scientific article published on 8 August 2016

Structural heterogeneity and environmentally regulated remodeling of Francisella tularensis subspecies novicida lipid A characterized by tandem mass spectrometry

scientific article published on 28 March 2007

Substrate Specificity and Ligand Interactions of CYP26A1, the Human Liver Retinoic Acid Hydroxylase ⬇️

scientific article published on April 26, 2011

Sulfur oxidizers dominate carbon fixation at a biogeochemical hot spot in the dark ocean

scientific article

Surface Acoustic Wave Nebulization Facilitating Lipid Mass Spectrometric Analysis ⬇️

scientific article published on July 12, 2012

Surface Acoustic Wave Nebulization Produces Ions with Lower Internal Energy than Electrospray Ionization ⬇️

scientific article published on April 3, 2012

Surface acoustic wave nebulization device with dual interdigitated transducers improves SAWN-MS performance

scientific article published in June 2016

Surface acoustic wave nebulization of peptides as a microfluidic interface for mass spectrometry

scientific article

System-based proteomic analysis of the interferon response in human liver cells

scientific article

Systematic Analysis of Yeast Proteome Reveals Peptide Detectability Factors for Mass Spectrometry

scientific article published on January 2015

Systematic investigation of lycopene effects in LNCaP cells by use of novel large-scale proteomic analysis software

scientific article

Tandem mass spectrometry investigation of ADP-ribosylated kemptide

scientific article published on 17 November 2008

The Proteome Folding Project: proteome-scale prediction of structure and function

scientific article

The SOX2 response program in glioblastoma multiforme: an integrated ChIP-seq, expression microarray, and microRNA analysis

scientific article

The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: I. Statistically annotated datasets for peptide sequences and proteins identified via the application of ICAT

scientific article published on 25 June 2003

The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: II. Evaluation of tandem mass spectrometry methodologies for large-scale protein analysis, and the applicatio

scientific article

The study of macromolecular complexes by quantitative proteomics

scientific article published on 18 February 2003

Transcription factor Foxp3 and its protein partners form a complex regulatory network

scientific article

Transferrin receptor-dependent cytotoxicity of artemisinin-transferrin conjugates on prostate cancer cells and induction of apoptosis

scientific article

Urinary Proteome Analysis of Irritable Bowel Syndrome (IBS) Symptom Subgroups ⬇️

scientific article published on October 26, 2012

Urinary proteomics evaluation in interstitial cystitis/painful bladder syndrome: a pilot study ⬇️

scientific article published on July 1, 2010

Use of captive spray ionization to increase throughput of the data-independent acquisition technique PAcIFIC.

scientific article

VgrG-5 is a Burkholderia type VI secretion system-exported protein required for multinucleated giant cell formation and virulence

scientific article published on 22 January 2014

WaveletQuant, an improved quantification software based on wavelet signal threshold de-noising for labeled quantitative proteomic analysis

scientific article published on 29 April 2010

xComb: a cross-linked peptide database approach to protein-protein interaction analysis

scientific article

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