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List of works by Reinhard Laubenbacher

A computational algebra approach to the reverse engineering of gene regulatory networks

scientific article

A computational model of invasive aspergillosis in the lung and the role of iron

scientific article

A general map of iron metabolism and tissue-specific subnetworks

scientific article published on 06 March 2009

A mathematical framework for agent based models of complex biological networks.

scientific article

A mathematical model of skeletal muscle disease and immune response in the mdx mouse.

scientific article

A network biology approach to denitrification in Pseudomonas aeruginosa

scientific article published on 23 February 2015

A systems biology approach to iron metabolism

scientific article published on January 2014

A systems biology view of cancer

scientific article published on 06 June 2009

A virtual look at Epstein-Barr virus infection: biological interpretations

scientific article

ADAM: analysis of discrete models of biological systems using computer algebra

scientific article

Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective.

scientific article

Algebraic Methods in Mathematical Biology ⬇️

scientific article published on April 1, 2011

Algebraic models of biochemical networks

scientific article

AlgoRun: a Docker-based packaging system for platform-agnostic implemented algorithms.

scientific article published on 2 March 2016

An algebra-based method for inferring gene regulatory networks.

scientific article

An important role for periplasmic storage in Pseudomonas aeruginosa copper homeostasis revealed by a combined experimental and computational modeling study

scientific article published on 16 September 2018

Bioinformatics tools for cancer metabolomics

scientific article

Comparison of reverse-engineering methods using an in silico network

scientific article published on 09 October 2007

Computational Systems Biology: Discrete Models of Gene Regulation Networks

article

Computer Algebra in Systems Biology

scholarly article by R. Laubenbacher and B. Sturmfels published in December 2009

Connecting the molecular function of microRNAs to cell differentiation dynamics

scientific article published on 25 September 2019

Control of Intracellular Molecular Networks Using Algebraic Methods

scientific article published on 23 December 2019

Costimulation Endows Immunotherapeutic CD8 T Cells with IL-36 Responsiveness during Aerobic Glycolysis

scientific article

Differential gene expression in normal and transformed human mammary epithelial cells in response to oxidative stress

scientific article

Dimension Reduction of Large Sparse AND-NOT Network Models

scientific article published on 10 September 2015

Discretization of time series data

scientific article

Dynamics of semilattice networks with strongly connected dependency graph

article

Editorial

Editorial

Editorial

Fostering bioinformatics education through skill development of professors: Big Genomic Data Skills Training for Professors

scientific article published on 13 June 2019

Identification of control targets in Boolean molecular network models via computational algebra. ⬇️

scientific article

Inference of Ecological Interaction Networks

Iron acquisition and oxidative stress response in aspergillus fumigatus

scientific article published on 24 April 2015

Mathematical biology education: beyond calculus

scientific article published in July 2009

Mathematical modeling of the Candida albicans yeast to hyphal transition reveals novel control strategies

scientific article published in 2021

Modeling stochasticity and variability in gene regulatory networks

scientific article published on 6 June 2012

Multi-scale mechanistic modelling of the host defence in invasive aspergillosis reveals leucocyte activation and iron acquisition as drivers of infection outcome

scientific article published in 2022

Nested Canalyzing, Unate Cascade, and Polynomial Functions.

scientific article published on September 2007

Optimal harvesting for a predator-prey agent-based model using difference equations

scientific article published on 6 January 2015

Parameter estimation for Boolean models of biological networks

PlantSimLab - a modeling and simulation web tool for plant biologists

scientific article published on 21 October 2019

Polynomial algebra of discrete models in systems biology

scientific article

Regulatory patterns in molecular interaction networks ⬇️

scientific article published on August 24, 2011

Simulating Epstein-Barr virus infection with C-ImmSim.

scientific article published on 6 March 2007

Stabilizing gene regulatory networks through feedforward loops ⬇️

scientific article published on June 1, 2013

Steady state analysis of Boolean molecular network models via model reduction and computational algebra

scientific article

The contribution of microRNA-mediated regulation to short- and long-term gene expression predictability

scientific article published on 21 October 2019

The core control system of intracellular iron homeostasis: A mathematical model ⬇️

scientific article published on January 23, 2012

The dynamics of conjunctive and disjunctive Boolean network models.

scientific article

The effect of negative feedback loops on the dynamics of boolean networks

scientific article published on 28 March 2008

The genome-wide early temporal response of Saccharomyces cerevisiae to oxidative stress induced by cumene hydroperoxide.

scientific article

The innate immune response to ischemic injury: a multiscale modeling perspective

scientific article published on 10 April 2018

Topological Data Analysis

scientific article published on 01 July 2019

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