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List of works by Joseph Hoffman

A Novel Approach for Mining Polymorphic Microsatellite Markers In Silico ⬇️

scientific article published on August 10, 2011

A global cline in a colour polymorphism suggests a limited contribution of gene flow towards the recovery of a heavily exploited marine mammal

scientific article published on 17 October 2018

A high-quality pedigree and genetic markers both reveal inbreeding depression for quality but not survival in a cooperative mammal

scientific article published on 29 April 2018

Age- and quality-dependent DNA methylation correlate with melanin-based coloration in a wild bird

scientific article published on 30 May 2018

Bayesian inference of a historical bottleneck in a heavily exploited marine mammal ⬇️

scientific article published on September 3, 2011

Born blonde: a recessive loss-of-function mutation in the melanocortin 1 receptor is associated with cream coat coloration in Antarctic fur seals

scientific article

Candidate genes versus genome-wide associations: which are better for detecting genetic susceptibility to infectious disease? ⬇️

scientific article published on October 6, 2010

Chemical fingerprints encode mother-offspring similarity, colony membership, relatedness, and genetic quality in fur seals

scientific article

Chemical patterns of colony membership and mother-offspring similarity in Antarctic fur seals are reproducible

scientific article published on 19 October 2020

Climate change selects for heterozygosity in a declining fur seal population

scientific article

Complete mitochondrial genome of the Antarctic fur seal (<i>Arctocephalus gazella</i>)

scientific article published on 06 September 2019

Contrasting genetic diversity and population structure among three sympatric Madagascan shorebirds: parallels with rarity, endemism, and dispersal

scientific article

Demographic causes of adult sex ratio variation and their consequences for parental cooperation

scientific article published on 25 April 2018

Demographic histories and genetic diversity across pinnipeds are shaped by human exploitation, ecology and life-history

scientific article published in Nature Communications

Detailed insights into pan-European population structure and inbreeding in wild and hatchery Pacific oysters (Crassostrea gigas ) revealed by genome-wide SNP data

scientific article published on 31 December 2018

Determinants of genetic variation across eco-evolutionary scales in pinnipeds

scientific article published on 08 June 2020

Disentangling the contribution of sexual selection and ecology to the evolution of size dimorphism in pinnipeds.

scientific article

EB Ford revisited: assessing the long-term stability of wing-spot patterns and population genetic structure of the meadow brown butterfly on the Isles of Scilly

scientific article

Early sexual dimorphism in the developing gut microbiome of northern elephant seals

scientific article published on 15 February 2020

Editorial: Polar Genomics in a Changing World

scientific article published on 3 July 2023

Evidence for an Allee effect in a declining fur seal population

scientific article published on 24 March 2021

Experimental validation of in silico predicted RAD locus frequencies using genomic resources and short read data from a model marine mammal

scientific article published on 22 January 2019

Extremely low Plasmodium prevalence in wild plovers and coursers from Cape Verde and Madagascar

scientific article

Fine-scale matrilineal population structure in the Galapagos fur seal and its implications for conservation management

Fur seal microbiota are shaped by the social and physical environment, show mother-offspring similarities and are associated with host genetic quality

scientific article published on 29 April 2019

GCalignR: An R package for aligning gas-chromatography data for ecological and evolutionary studies.

scientific article published on 7 June 2018

Gene discovery in the Antarctic fur seal (Arctocephalus gazella) skin transcriptome ⬇️

scientific article published on March 16, 2011

Genetic analysis of Boletus edulis suggests that intra-specific competition may reduce local genetic diversity as a woodland ages

scientific article published on 08 July 2020

Genotyping by sequencing reveals contrasting patterns of population structure, ecologically mediated divergence, and long‐distance dispersal in North American palms.

scientific article published on 8 May 2018

Geographic variation of the major histocompatibility complex in Eastern Atlantic grey seals (Halichoerus grypus) ⬇️

scientific article published on December 28, 2010

Global population structure and demographic history of the grey seal

scientific article published on 25 July 2014

Heterozygosity at neutral and immune loci is not associated with neonatal mortality due to microbial infection in Antarctic fur seals

scientific article published on 20 June 2019

High-throughput sequencing and graph-based cluster analysis facilitate microsatellite development from a highly complex genome.

scientific article published on 22 July 2016

High-throughput sequencing reveals inbreeding depression in a natural population.

scientific article published on 28 February 2014

Iceberg scour and shell damage in the Antarctic bivalve Laternula elliptica

scientific article (publication date: 2012)

Inbreeding depresses altruism in a cooperative society

scientific article published on 11 August 2020

Lack of long-term acclimation in Antarctic encrusting species suggests vulnerability to warming

scientific article published on 29 July 2019

Long-term effective population size dynamics of an intensively monitored vertebrate population

scientific article published on 24 August 2016

MHC genotype and near-deterministic mortality in grey seals ⬇️

scientific article published on September 20, 2012

Mining the transcriptomes of four commercially important shellfish species for single nucleotide polymorphisms within biomineralization genes

scientific article

Molecular genetic analysis of two native desert palm genera, Washingtonia and Brahea, from the Baja California Peninsula and Guadalupe Island

scientific article

Molecular insights into the historic demography of bowhead whales: understanding the evolutionary basis of contemporary management practices ⬇️

scientific article published on November 26, 2012

Multi-omics for studying and understanding polar life

scientific article published on 17 November 2023

No correlation between multi-locus heterozygosity and fitness in the common buzzard despite heterozygote advantage for plumage colour

scientific article published on 28 August 2013

Offspring Hormones Reflect the Maternal Prenatal Social Environment: Potential for Foetal Programming?

scientific article published on 13 January 2016

Population Genetic Structure is Unrelated to Shell Shape, Thickness and Organic Content in European Populations of the Soft-Shell Clam Mya Arenaria

scientific article published on 11 March 2020

Population structure and historical demography of South American sea lions provide insights into the catastrophic decline of a marine mammal population

scientific article

Pup Vibrissae Stable Isotopes Reveal Geographic Differences in Adult Female Southern Sea Lion Habitat Use during Gestation

scientific article

RAD Sequencing and a Hybrid Antarctic Fur Seal Genome Assembly Reveal Rapidly Decaying Linkage Disequilibrium, Global Population Structure and Evidence for Inbreeding

scientific article published on 31 July 2018

RAD sequencing resolves fine-scale population structure in a benthic invertebrate: implications for understanding phenotypic plasticity

scientific article published on 08 February 2017

RAD sequencing sheds new light on the genetic structure and local adaptation of European scallops and resolves their demographic histories

scientific article published on 15 May 2019

Refinement of the Antarctic fur seal (<i>Arctocephalus gazella</i>) reference genome increases continuity and completeness

scientific article published in 2024

Sex-specific early survival drives adult sex ratio bias in snowy plovers and impacts mating system and population growth.

scientific article

Sweepstake reproductive success and collective dispersal produce chaotic genetic patchiness in a broadcast spawner

scientific article published in 2021

The genetic legacy of extreme exploitation in a polar vertebrate

scientific article published on 20 March 2020

The influence of inherited plumage colour morph on morphometric traits and breeding investment in zebra finches (Taeniopygia guttata).

scientific article

Transcriptome assembly for a colour-polymorphic grasshopper (Gomphocerus sibiricus) with a very large genome size

scientific article published on 14 May 2019

Transcriptomic SNP discovery for custom genotyping arrays: impacts of sequence data, SNP calling method and genotyping technology on the probability of validation success

scientific article

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