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List of works by Vladimir Brusić

A computational method for identification of vaccine targets from protein regions of conserved human leukocyte antigen binding

scientific article published on 9 December 2015

A concentration-dependent analysis method for high density protein microarrays

scientific article published on 5 April 2008

A conserved E7-derived cytotoxic T lymphocyte epitope expressed on human papillomavirus 16-transformed HLA-A2+ epithelial cancers

scientific article

A novel H2A-E+ transgenic model susceptible to human but not mouse thyroglobulin-induced autoimmune thyroiditis: identification of mouse pathogenic epitopes.

scientific article

A systematic analysis of a broadly neutralizing antibody AR3C epitopes on Hepatitis C virus E2 envelope glycoprotein and their cross-reactivity

scientific article published on 9 December 2015

A systematic bioinformatics approach for selection of epitope-based vaccine targets

scientific article (publication date: December 2006)

ALLERDB database and integrated bioinformatic tools for assessment of allergenicity and allergic cross-reactivity.

scientific article published in December 2006

Accurate prediction of scorpion toxin functional properties from primary structures

scientific article published on 01 September 2005

Advances in Computational Immunology

scientific article published on 30 December 2015

An adaptive genetic algorithm for selection of blood-based biomarkers for prediction of Alzheimer's disease progression

scientific article published on 9 December 2015

An update on the functional molecular immunology (FIMM) database

scientific article published in January 2005

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

scientific article (publication date: 5 December 2002)

Analysis of viral diversity for vaccine target discovery

scientific article published on 21 December 2017

Big data analytics in immunology: a knowledge-based approach.

scientific article

Bioinformatic strategies for better understanding of immune function.

scientific article published in January 2003

Bioinformatics for cancer immunotherapy target discovery

scientific article

Bioinformatics for characterisation of allergens, allergenicity and allergic crossreactivity ⬇️

scientific article published on May 1, 2003

Bioinformatics for study of autoimmunity

scientific article published on December 2006

Bioinformatics for venom and toxin sciences

scientific article

BlockLogo: visualization of peptide and sequence motif conservation

scientific article published on 31 August 2013

Characterization of a Novel H2A−E+ Transgenic Model Susceptible to Heterologous but Not Self Thyroglobulin in Autoimmune Thyroiditis: Thyroiditis Transfer with Vβ8+ T Cells ⬇️

scientific article published on August 25, 2001

Combining cellular automata and Lattice Boltzmann method to model multiscale avascular tumor growth coupled with nutrient diffusion and immune competition

scientific article published on 2 December 2011

Complete-proteome mapping of human influenza A adaptive mutations: implications for human transmissibility of zoonotic strains.

scientific article

Comprehensive analysis of cancer-associated somatic mutations in class I HLA genes

scientific article published on 15 September 2015

Computational and bioinformatics techniques for immunology

scientific article

Computational detection of vertebrate RNA polymerase II promoters

scientific article published in January 2003

Computational immunology: The coming of age.

scientific article

Computational methods for prediction of T-cell epitopes--a framework for modelling, testing, and applications

scientific article

Computational resources for high-dimensional immune analysis from the Human Immunology Project Consortium

scientific article

Computational tools for the study of allergens ⬇️

scientific article published on November 1, 2003

Computational vaccinology and the ICoVax 2012 workshop

scientific article published on 8 March 2013

Computer model for recognition of functional transcription start sites in RNA polymerase II promoters of vertebrates

article

Conservation analysis of dengue virus T-cell epitope-based vaccine candidates using Peptide block entropy

scientific article published on 20 December 2011

Conservation and Variability of West Nile Virus Proteins

scientific article

Conservation and variability of dengue virus proteins: implications for vaccine design

scientific article

Critical technologies for bioinformatics

scientific article published on 22 May 2008

CysView: protein classification based on cysteine pairing patterns.

scientific article

Cytokine-related genes identified from the RIKEN full-length mouse cDNA data set

scientific article

Dana-Farber repository for machine learning in immunology

scientific article published on 18 July 2011

Data mining of cancer vaccine trials: a bird's-eye view

scientific article

Data processing and analysis for protein microarrays

scientific article

Database resources for proteomics-based analysis of cancer

scientific article published on January 2011

Deduction of functional peptide motifs in scorpion toxins

scientific article published on 01 June 2006

Direct identification of an HPV-16 tumor antigen from cervical cancer biopsy specimens

scientific article published on 13 December 2011

Disruption of Helix-Capping Residues 671 and 674 Reveals a Role in HIV-1 Entry for a Specialized Hinge Segment of the Membrane Proximal External Region of gp41

scientific article

Diverse patterns of T-cell response against multiple newly identified human Y chromosome-encoded minor histocompatibility epitopes

scientific article

Dragon Promoter Finder: recognition of vertebrate RNA polymerase II promoters

scientific article published on January 2002

Efficacious immune therapy in chronic myelogenous leukemia (CML) recognizes antigens that are expressed on CML progenitor cells

scientific article

Efficacy of HLA-DRB1∗03:01 and H2E transgenic mouse strains to correlate pathogenic thyroglobulin epitopes for autoimmune thyroiditis.

scientific article

Elemental metabolomics

scientific article published on 10 January 2017

Evaluation of MHC class I peptide binding prediction servers: applications for vaccine research

scientific article

Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research

scientific article

Evolutionarily conserved protein sequences of influenza a viruses, avian and human, as vaccine targets

scientific article

FIMM, a database of functional molecular immunology: update 2002

scientific article

FLAVIdB: A data mining system for knowledge discovery in flaviviruses with direct applications in immunology and vaccinology

scientific article

FluKB: A Knowledge-Based System for Influenza Vaccine Target Discovery and Analysis of the Immunological Properties of Influenza Viruses

scientific article

Food authentication: Techniques, trends & emerging approaches

scholarly article by Georgios P. Danezis et al published December 2016 in Trends in Analytical Chemistry

Food authentication: state of the art and prospects

From immunoinformatics to immunomics

scientific article published on 01 April 2003

Generation and phenotypic characterization of new human ovarian cancer cell lines with the identification of antigens potentially recognizable by HLA-restricted cytotoxic T cells ⬇️

scientific article published on September 26, 1997

Graft-versus-leukemia antigen CML66 elicits coordinated B-cell and T-cell immunity after donor lymphocyte infusion

scientific article

HIV-1 broadly neutralizing antibody extracts its epitope from a kinked gp41 ectodomain region on the viral membrane

scientific article

HLA-binding properties of tumor neoepitopes in humans

scientific article published on 03 March 2014

HPVdb: a data mining system for knowledge discovery in human papillomavirus with applications in T cell immunology and vaccinology

scientific article

Hidden Markov model-based prediction of antigenic peptides that interact with MHC class II molecules

scientific article published in January 2002

Highlights of international conference of immunogenomics and immunomics, October 8-12, 2006 Budapest, Hungary

scientific article published on 01 December 2006

Hotspot Hunter: a computational system for large-scale screening and selection of candidate immunological hotspots in pathogen proteomes

scientific article

Human leukocyte antigen typing using a knowledge base coupled with a high-throughput oligonucleotide probe array analysis

scientific article

Identification of "pathologs" (disease-related genes) from the RIKEN mouse cDNA dataset using human curation plus FACTS, a new biological information extraction system

scientific article

Identification of human leucocyte antigen (HLA)-A*0201-restricted cytotoxic T lymphocyte epitopes derived from HLA-DOβ as a novel target for multiple myeloma

scientific article published on 30 August 2013

Identification of human-to-human transmissibility factors in PB2 proteins of influenza A by large-scale mutual information analysis.

scientific article

Immune system modeling and related pathologies

scientific article published on 17 December 2012

ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization

scientific article published on May 2009

ImmunoGrid: towards agent-based simulations of the human immune system at a natural scale

scientific article published on June 2010

Immunoinformatics and its relevance to understanding human immune disease

scientific article

Immunoinformatics--the new kid in town.

scientific article published on January 2003

Immunoinformatics-The New Kid in Town

Impaired tumor antigen processing by immunoproteasome-expressing CD40-activated B cells and dendritic cells

scientific article published on 13 March 2011

In silico characterization of immunogenic epitopes presented by HLA-Cw*0401

scientific article

In silico prediction and immunological validation of common HLA-DRB1-restricted T cell epitopes of Candida albicans secretory aspartyl proteinase 2.

scientific article published on April 2008

InCoB2012 Conference: from biological data to knowledge to technological breakthroughs

scientific article published on 13 December 2012

Information management for the study of allergies

scientific article

Information technologies for vaccine research

scientific article

Large-scale analysis of B-cell epitopes on influenza virus hemagglutinin - implications for cross-reactivity of neutralizing antibodies

scientific article

Large-scale analysis of antigenic diversity of T-cell epitopes in dengue virus

scientific article

Large-scale computational identification of HIV T-cell epitopes

article

Literature classification for semi-automated updating of biological knowledgebases

scientific article published on 16 October 2013

MAGE-6 encodes HLA-DRbeta1*0401-presented epitopes recognized by CD4+ T cells from patients with melanoma or renal cell carcinoma.

scientific article

MHC molecular mimicry in diabetes ⬇️

scientific article published on May 1, 1995

MHCPEP, a database of MHC-binding peptides: update 1997 ⬇️

scientific article published on January 1, 1998

MULTIPRED2: a computational system for large-scale identification of peptides predicted to bind to HLA supertypes and alleles

scientific article published on 2 December 2010

MULTIPRED: a computational system for prediction of promiscuous HLA binding peptides

scientific article

Machine learning competition in immunology - Prediction of HLA class I binding peptides.

scientific article published on 29 September 2011

Mathematical modeling for novel cancer drug discovery and development

scientific article

Methods for prediction of peptide binding to MHC molecules: a comparative study.

scientific article

Mutated BCR-ABL generates immunogenic T-cell epitopes in CML patients

scientific article published on 21 August 2012

NY-ESO-1 119-143 is a promiscuous major histocompatibility complex class II T-helper epitope recognized by Th1- and Th2-type tumor-reactive CD4+ T cells ⬇️

scientific article published on January 1, 2002

Neural models for predicting viral vaccine targets

scientific article published in October 2005

Neural network-based prediction of candidate T-cell epitopes ⬇️

scientific article published on October 1, 1998

Novel myeloma-associated antigens revealed in the context of syngeneic hematopoietic stem cell transplantation

scientific article published on 20 January 2012

One NY-ESO-1-derived epitope that promiscuously binds to multiple HLA-DR and HLA-DP4 molecules and stimulates autologous CD4+ T cells from patients with NY-ESO-1-expressing melanoma

scientific article published on 01 February 2005

Optimizing vaccine development

scientific article published on 02 June 2011

PB1-F2 Finder: scanning influenza sequences for PB1-F2 encoding RNA segments

scientific article

PRED(TAP): a system for prediction of peptide binding to the human transporter associated with antigen processing

scientific article

PREDBALB/c: a system for the prediction of peptide binding to H2d molecules, a haplotype of the BALB/c mouse.

scientific article

PREDNOD, a prediction server for peptide binding to the H-2g7 haplotype of the non-obese diabetic mouse

scientific article published in December 2006

PREDmafa

Pathogenic human thyroglobulin peptides in HLA-DR3 transgenic mouse model of autoimmune thyroiditis.

scientific article published in June 2004

Pathway analysis and transcriptomics improve protein identification by shotgun proteomics from samples comprising small number of cells--a benchmarking study

scientific article published on 8 December 2014

Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms

scientific article

Prediction of HLA-DQ3.2beta ligands: evidence of multiple registers in class II binding peptides

scientific article published in March 2006

Prediction of MHC class II-binding peptides using an evolutionary algorithm and artificial neural network ⬇️

scientific article published on January 1, 1998

Prediction of promiscuous peptides that bind HLA class I molecules

scientific article published on June 2002

Prediction of supertype-specific HLA class I binding peptides using support vector machines

scientific article published on 25 January 2007

Promiscuous T cell epitope prediction of Candida albicans secretory aspartyl protienase family of proteins

scientific article published on 25 September 2007

Proteins accessible to immune surveillance show significant T-cell epitope depletion: Implications for vaccine design

scientific article published on 27 June 2009

Proteome informatics for cancer research: from molecules to clinic

scientific article published on March 2007

Rule-based knowledge aggregation for large-scale protein sequence analysis of influenza A viruses

scientific article

SARS coronavirus nucleocapsid immunodominant T-cell epitope cluster is common to both exogenous recombinant and endogenous DNA-encoded immunogens

scientific article published on 4 January 2006

SCORPION2: a database for structure-function analysis of scorpion toxins

scientific article published on 30 January 2006

Serologic markers of effective tumor immunity against chronic lymphocytic leukemia include nonmutated B-cell antigens.

scientific article

Strategies for Identifying and Predicting Islet Autoantigen T-cell Epitopes in Insulin-dependent Diabetes Mellitus ⬇️

scientific article published on October 1, 1997

Supporting the curation of biological databases with reusable text mining

scientific article

Systematic analysis of snake neurotoxins' functional classification using a data warehousing approach

scientific article

Systematic identification of personal tumor-specific neoantigens in chronic lymphocytic leukemia

scientific article

TANTIGEN: a comprehensive database of tumor T cell antigens

scientific article

The Future for Computational Modelling and Prediction Systems in Clinical Immunology

scholarly article by Nikolai Petrovsky et al published 7 October 2008 in Novartis Foundation symposium

The changing field of vaccine development in the genomics era

scientific article published on 01 September 2004

The future for computational modelling and prediction systems in clinical immunology.

scientific article published on January 2003

The growth of bioinformatics

scientific article published on 24 March 2007

Transcriptionally abundant major histocompatibility complex class I alleles are fundamental to nonhuman primate simian immunodeficiency virus-specific CD8+ T cell responses

scientific article

Tumor antigens as proteogenomic biomarkers in invasive ductal carcinomas

scientific article

Ultra-high resolution HLA genotyping and allele discovery by highly multiplexed cDNA amplicon pyrosequencing

scientific article

Use of Artificial Neural Networks in Improving Renal Transplantation Outcomes

scholarly article by Nikolai Petrovsky et al published January 2002 in Graft: organ and cell transplantation

Use of Artificial Neural Networks in Improving Renal Transplantation Outcomes

scholarly article by Nikolai Petrovsky et al published 1 January 2002 in CrossRef Listing of Deleted DOIs

Using Gaussian process with test rejection to detect T-cell epitopes in pathogen genomes.

scientific article published in October 2010

Virtual models of the HLA class I antigen processing pathway

scientific article

West Nile virus T-cell ligand sequences shared with other flaviviruses: a multitude of variant sequences as potential altered peptide ligands

scientific article

[Bioinformatics in Asia]

scientific article published on 01 January 2004

gp100/pmel17 and tyrosinase encode multiple epitopes recognized by Th1-type CD4+T cells ⬇️

scientific article published on November 30, 2001

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