List of works - Susan M Huse

A core human microbiome as viewed through 16S rRNA sequence clusters

scientific article

A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis

scientific article

A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes

scientific article

Accuracy and quality of massively parallel DNA pyrosequencing

scientific article

Community structures of fecal bacteria in cattle from different animal feeding operations

scientific article

Comparison of brush and biopsy sampling methods of the ileal pouch for assessment of mucosa-associated microbiota of human subjects

scientific article published on 14 February 2014

Comparison of the microbial community structures of untreated wastewaters from different geographic locales

scientific article

Culture-independent analysis of bacterial fuel contamination provides insight into the level of concordance with the standard industry practice of aerobic cultivation

scientific article (publication date: July 2011)

DRISEE overestimates errors in metagenomic sequencing data.

scientific article

Defining seasonal marine microbial community dynamics

scientific article

Defining the healthy"core microbiome" of oral microbial communities

scientific article

Developmental exposure to estrogen alters differentiation and epigenetic programming in a human fetal prostate xenograft model

scientific article published on 23 March 2015

Differential response to abiraterone acetate and di-n-butyl phthalate in an androgen-sensitive human fetal testis xenograft bioassay

scientific article

Distance-decay relationships partially determine diversity patterns of phyllosphere bacteria on Tamarix trees across the Sonoran Desert [corrected]

scientific article

Diversity and dynamics of rare and of resident bacterial populations in coastal sands

scientific article

Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure

scientific article

Effects of continuous bisphenol A exposure from early gestation on 90 day old rat testes function and sperm molecular profiles: A CLARITY-BPA consortium study.

scientific article published on 26 March 2018

Erratum to: Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity

scientific article published on 31 July 2015

Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing

scientific article

Exploring the oral microbiota of children at various developmental stages of their dentition in the relation to their oral health

scientific article

Global distribution and diversity of marine Verrucomicrobia

scientific article

Global patterns of bacterial beta-diversity in seafloor and seawater ecosystems

scientific article published in 2011

Interpreting Prevotella and Bacteroides as biomarkers of diet and lifestyle

scientific article

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

scientific article

Isolated communities of Epsilonproteobacteria in hydrothermal vent fluids of the Mariana Arc seamounts

scientific article published on 14 May 2010

Long term seasonal dynamics of synechococcus population structure in the gulf of aqaba, northern red sea.

scientific article

MCF-7 Human Breast Cancer Cells Form Differentiated Microtissues in Scaffold-Free Hydrogels

scientific article published on 12 August 2015

Macroecological patterns of marine bacteria on a global scale

article by Anthony S. Amend et al published 7 November 2012 in Journal of Biogeography

Maturation of the developing human fetal prostate in a rodent xenograft model

scientific article published on 30 August 2013

Metagenomic study of the oral microbiota by Illumina high-throughput sequencing.

scientific article published on 29 September 2009

Microbial diversity in the deep sea and the underexplored "rare biosphere"

scientific article

Microbial population structures in the deep marine biosphere

scientific article

Morphologic effects of estrogen stimulation on 3D MCF-7 microtissues

scientific article published on 24 February 2016

Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis

scientific article published on 04 March 2013

Oligotyping analysis of the human oral microbiome

scientific article

Patterns of gene expression and DNA methylation in human fetal and adult liver

scientific article published on 21 November 2015

Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbation

scientific article

Sewage reflects the distribution of human faecal Lachnospiraceae.

scientific article

Shifts in the microbial community composition of Gulf Coast beaches following beach oiling

scientific article

Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity

scientific article published on 20 May 2015

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

scientific article

TaxMan: a server to trim rRNA reference databases and inspect taxonomic coverage

scientific article

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

2012 scientific article

The stage-specific testicular germ cell apoptotic response to low-dose X-irradiation and 2,5-hexanedione combined exposure. I: Validation of the laser capture microdissection method for qRT-PCR array application

scientific article

The stage-specific testicular germ cell apoptotic response to low-dose radiation and 2,5-hexanedione combined exposure. II: qRT-PCR array analysis reveals dose dependent adaptive alterations in the apoptotic pathway

scientific article

The taxonomic and functional diversity of microbes at a temperate coastal site: a 'multi-omic' study of seasonal and diel temporal variation

scientific article

VAMPS: a website for visualization and analysis of microbial population structures

scientific article (publication date: 5 February 2014)

Variability and diversity of nasopharyngeal microbiota in children: a metagenomic analysis

scientific article (publication date: 28 February 2011)

List of works by Susan M Huse

A core human microbiome as viewed through 16S rRNA sequence clusters

A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis

A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes

Accuracy and quality of massively parallel DNA pyrosequencing

Community structures of fecal bacteria in cattle from different animal feeding operations

Comparison of brush and biopsy sampling methods of the ileal pouch for assessment of mucosa-associated microbiota of human subjects

Comparison of the microbial community structures of untreated wastewaters from different geographic locales

Culture-independent analysis of bacterial fuel contamination provides insight into the level of concordance with the standard industry practice of aerobic cultivation

DRISEE overestimates errors in metagenomic sequencing data.

Defining seasonal marine microbial community dynamics

Defining the healthy"core microbiome" of oral microbial communities

Developmental exposure to estrogen alters differentiation and epigenetic programming in a human fetal prostate xenograft model

Differential response to abiraterone acetate and di-n-butyl phthalate in an androgen-sensitive human fetal testis xenograft bioassay

Distance-decay relationships partially determine diversity patterns of phyllosphere bacteria on Tamarix trees across the Sonoran Desert [corrected]

Diversity and dynamics of rare and of resident bacterial populations in coastal sands

Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure

Effects of continuous bisphenol A exposure from early gestation on 90 day old rat testes function and sperm molecular profiles: A CLARITY-BPA consortium study.

Erratum to: Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity

Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing

Exploring the oral microbiota of children at various developmental stages of their dentition in the relation to their oral health

Global distribution and diversity of marine Verrucomicrobia

Global patterns of bacterial beta-diversity in seafloor and seawater ecosystems

Interpreting Prevotella and Bacteroides as biomarkers of diet and lifestyle

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

Isolated communities of Epsilonproteobacteria in hydrothermal vent fluids of the Mariana Arc seamounts

Long term seasonal dynamics of synechococcus population structure in the gulf of aqaba, northern red sea.

MCF-7 Human Breast Cancer Cells Form Differentiated Microtissues in Scaffold-Free Hydrogels

Macroecological patterns of marine bacteria on a global scale

Maturation of the developing human fetal prostate in a rodent xenograft model

Metagenomic study of the oral microbiota by Illumina high-throughput sequencing.

Microbial diversity in the deep sea and the underexplored "rare biosphere"

Microbial population structures in the deep marine biosphere

Morphologic effects of estrogen stimulation on 3D MCF-7 microtissues

Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis

Oligotyping analysis of the human oral microbiome

Patterns of gene expression and DNA methylation in human fetal and adult liver

Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbation

Sewage reflects the distribution of human faecal Lachnospiraceae.

Shifts in the microbial community composition of Gulf Coast beaches following beach oiling

Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

TaxMan: a server to trim rRNA reference databases and inspect taxonomic coverage

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

The stage-specific testicular germ cell apoptotic response to low-dose X-irradiation and 2,5-hexanedione combined exposure. I: Validation of the laser capture microdissection method for qRT-PCR array application

The stage-specific testicular germ cell apoptotic response to low-dose radiation and 2,5-hexanedione combined exposure. II: qRT-PCR array analysis reveals dose dependent adaptive alterations in the apoptotic pathway

The taxonomic and functional diversity of microbes at a temperate coastal site: a 'multi-omic' study of seasonal and diel temporal variation

VAMPS: a website for visualization and analysis of microbial population structures

Variability and diversity of nasopharyngeal microbiota in children: a metagenomic analysis

Effects of continuous bisphenol A exposure from early gestation on 90 day old rat testes function and sperm molecular profiles: A CLARITY-BPA consortium study.