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List of works by Dina Demner-Fushman

"Bag of words" is not enough for strength of evidence classification.

scientific article published in January 2005

12 years on - Is the NLM medical text indexer still useful and relevant?

scientific article

A High Recall Classifier for Selecting Articles for MEDLINE Indexing

scientific article published on 01 January 2019

A bottom-up approach to MEDLINE indexing recommendations ⬇️

scientific article published on October 22, 2011

A customizable deep learning model for nosocomial risk prediction from critical care notes with indirect supervision

scientific article published on 01 April 2020

A dataset of 200 structured product labels annotated for adverse drug reactions.

scientific article

A dataset of clinically generated visual questions and answers about radiology images

A decade of community-wide efforts in advancing medical image understanding and retrieval

scientific article published on 01 January 2015

A mutation-centric approach to identifying pharmacogenomic relations in text

scientific article

A prototype system to support evidence-based practice

scientific article

A publicly available benchmark for biomedical dataset retrieval: the reference standard for the 2016 bioCADDIE dataset retrieval challenge

scientific article published in January 2017

A question-entailment approach to question answering

scientific article published on 22 October 2019

A simple method to extract key maternal data from neonatal clinical notes

scientific article

A usability study of the PubMed on Tap user interface for PDAs.

scientific article published on January 2004

An Ensemble Method for Spelling Correction in Consumer Health Questions

scientific article

An image feature-based approach to automatically find images for application to clinical decision support

scientific article

Annotating Logical Forms for EHR Questions

Annotation and retrieval of clinically relevant images

scientific article published on 9 July 2009

Automated classification of eligibility criteria in clinical trials to facilitate patient-trial matching for specific patient populations

scientific article

Automatic Classification of Structured Product Labels for Pregnancy Risk Drug Categories, a Machine Learning Approach

scientific article

Automatic Extraction and Post-coordination of Spatial Relations in Consumer Language

scientific article

Automatic MeSH Indexing: Revisiting the Subheading Attachment Problem

scientific article published on 01 January 2020

Automatic question answering for multiple stakeholders, the epidemic question answering dataset

scientific article published on 21 July 2022

Automatic segmentation of clinical texts.

scientific article published on January 2009

Automatic summarization of MEDLINE citations for evidence-based medical treatment: a topic-oriented evaluation

scientific article

Automatically classifying question types for consumer health questions

scientific article published on 14 November 2014

Automatically identifying health outcome information in MEDLINE records

scientific article published on 12 October 2005

Bio-SCoRes: A Smorgasbord Architecture for Coreference Resolution in Biomedical Text

scientific article

Biomedical image representation approach using visualness and spatial information in a concept feature space for interactive region-of-interest-based retrieval

scientific article

Bridging the Gap Between Consumers' Medication Questions and Trusted Answers

scientific article published on 01 August 2019

Chemical Entity Recognition for MEDLINE Indexing

scientific article published on 30 May 2020

Combining Open-domain and Biomedical Knowledge for Topic Recognition in Consumer Health Questions

scientific article

Combining structured and unstructured data to identify a cohort of ICU patients who received dialysis.

scientific article

Comparative effectiveness research designs: an analysis of terms and coverage in Medical Subject Headings (MeSH) and Emtree

scientific article

Comparison and combination of several MeSH indexing approaches

scientific article

Consumer health information and question answering: helping consumers find answers to their health-related information needs

scientific article published on 01 February 2020

Continual development of a personalized decision support system

scientific article

Creating a classification of image types in the medical literature for visual categorization

article published in 2012

Deep Learning from Incomplete Data: Detecting Imminent Risk of Hospital-acquired Pneumonia in ICU Patients

scientific article published on 01 January 2019

Enhancing Question Answering by Injecting Ontological Knowledge through Regularization

scientific article published on 01 November 2020

Essie: a concept-based search engine for structured biomedical text

scientific article

Evaluating performance of biomedical image retrieval systems--an overview of the medical image retrieval task at ImageCLEF 2004-2013

scientific article

Evaluating the Importance of Image-related Text for Ad-hoc and Case-based Biomedical Article Retrieval ⬇️

scientific article published on November 13, 2010

Evaluation of Clinical Text Segmentation to Facilitate Cohort Retrieval.

scientific article

Evaluation of PICO as a knowledge representation for clinical questions

scientific article

Extracting Biomedical Terms from Postpartum Depression Online Health Communities.

scientific article published on 6 May 2019

Extracting Characteristics of the Study Subjects from Full-Text Articles

scientific article

Extracting Rx information from clinical narrative ⬇️

scientific article published on September 1, 2010

Extracting drug indication information from structured product labels using natural language processing

scientific article

Extracting semantic predications from Medline citations for pharmacogenomics

scientific article

Feature engineering and a proposed decision-support system for systematic reviewers of medical evidence

scientific article

Final Reference Standard for 200 SPLs annotated for ADRs

The final reference standard data set for structured product labels annotated for adverse drug reactions

Finding Related Publications: Extending the Set of Terms Used to Assess Article Similarity

scientific article

Finding Understudied Disorders Potentially Associated with Maternal Morbidity and Mortality

Finding medication doses in the liteature

scientific article published on 05 December 2018

Flight of the PEGASUS? Comparing Transformers on Few-Shot and Zero-Shot Multi-document Abstractive Summarization

scientific article published on 01 December 2020

Frontiers of biomedical text mining: current progress

scientific article published on September 2007

Guiding principles for the use of knowledge bases and real-world data in clinical decision support systems: report by an international expert workshop at Karolinska Institutet

scientific article published on 29 September 2020

High vitamin B12 levels are not associated with increased mortality risk for ICU patients after adjusting for liver function: a cohort study

scientific article

Interactive Publication: The document as a research tool

scientific article

Interactive use of online health resources: a comparison of consumer and professional questions

scientific article

Investigating drug classes in biomedical terminologies from the perspective of clinical decision support ⬇️

scientific article published on November 13, 2010

Knowledge-based methods to help clinicians find answers in MEDLINE.

scientific article

Literature-based biomedical image classification and retrieval.

scientific article

Lower short- and long-term mortality associated with overweight and obesity in a large cohort study of adult intensive care unit patients ⬇️

scientific article published on December 18, 2012

MEDLINE as a source of just-in-time answers to clinical questions

scientific article

MetaMap Lite: an evaluation of a new Java implementation of MetaMap

scientific article

Methodology for creating UMLS content views appropriate for biomedical natural language processing

scientific article

Mining MEDLINE for problems associated with vitamin D.

scientific article

Mining the literature for genes associated with placenta-mediated maternal diseases.

scientific article

On the Role of Question Summarization and Information Source Restriction in Consumer Health Question Answering.

scientific article published on 6 May 2019

Organizing literature information for clinical decision support.

scientific article published in January 2004

Overview of the TREC 2017 Precision Medicine Track

scientific article published on 01 November 2017

Preliminary comparison of three search engines for point of care access to MEDLINE citations.

scientific article

Preparing a collection of radiology examinations for distribution and retrieval

scientific article published on July 2015

PubMed on Tap: discovering design principles for online information delivery to handheld computers.

scientific article published in January 2004

Question-driven summarization of answers to consumer health questions

scientific article published on 02 October 2020

Ranking Medical Subject Headings using a factor graph model

scientific article published on 23 March 2015

Resource Classification for Medical Questions

scientific article

Screening nonrandomized studies for medical systematic reviews: a comparative study of classifiers

scientific article

Searching for scientific evidence in a pandemic: An overview of TREC-COVID

scientific article published on 08 July 2021

Semantic annotation of consumer health questions

scientific article

Semantic characteristics of MEDLINE citations useful in therapeutic decision-making.

scientific article

Semantic clustering of answers to clinical questions

scientific article published on 11 October 2007

Semantic processing to enhance retrieval of diagnosis citations from Medline

scientific article

Spell checker for consumer language (CSpell)

scientific article published on 01 March 2019

Standardizing clinical laboratory data for secondary use

scientific article

TREC-COVID: Rationale and Structure of an Information Retrieval Shared Task for COVID-19

scientific article published on 04 May 2020

The potential for automated question answering in the context of genomic medicine: An assessment of existing resources and properties of answers ⬇️

scientific article published on March 1, 2009

The potential for automated question answering in the context of genomic medicine: an assessment of existing resources and properties of answers

scientific article published on 17 September 2009

The role of fine-grained annotations in supervised recognition of risk factors for heart disease from EHRs

scientific article published on 26 June 2015

The role of title, metadata and abstract in identifying clinically relevant journal articles

scientific article

Themes in biomedical natural language processing: BioNLP08.

scientific article

Tools for Identifying Reliable Evidence and Implementing it in Everyday Clinical Care

scientific article published on 18 March 2013

Toward a Natural Language Interface for EHR Questions

scientific article published on 25 March 2015

Toward automatic recognition of high quality clinical evidence

scientific article

Towards Zero-Shot Conditional Summarization with Adaptive Multi-Task Fine-Tuning

scientific article published on 01 November 2020

Towards automatic recognition of scientifically rigorous clinical research evidence.

scientific article published on 24 October 2008

Towards automating the initial screening phase of a systematic review.

scientific article published on January 2010

Towards the creation of a visual ontology of biomedical imaging entities ⬇️

scientific article published on November 3, 2012

UMLS content views appropriate for NLP processing of the biomedical literature vs. clinical text

scientific article

Understanding Spatial Language in Radiology: Representation Framework, Annotation, and Spatial Relation Extraction from Chest X-ray Reports using Deep Learning

scientific article published on 17 June 2020

Using wireless handheld computers to seek information at the point of care: an evaluation by clinicians

scientific article

What can natural language processing do for clinical decision support?

scientific article

Window classification of brain CT images in biomedical articles ⬇️

scientific article published on November 3, 2012

Word Sense Disambiguation by Selecting the Best Semantic Type Based on Journal Descriptor Indexing: Preliminary Experiment

scientific article

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