List of works - Hua Xu

A comparative study of current Clinical Natural Language Processing systems on handling abbreviations in discharge summaries

scientific article published on 3 November 2012

A comprehensive study of named entity recognition in Chinese clinical text.

scientific article

A hybrid system for temporal information extraction from clinical text

scientific article published on 09 April 2013

A long journey to short abbreviations: developing an open-source framework for clinical abbreviation recognition and disambiguation (CARD).

scientific article published on 18 August 2016

A prototype application for real-time recognition and disambiguation of clinical abbreviations

A study of active learning methods for named entity recognition in clinical text

scientific article published on 15 September 2015

A study of machine-learning-based approaches to extract clinical entities and their assertions from discharge summaries.

scientific article

A study of transportability of an existing smoking status detection module across institutions.

scientific article published on 3 November 2012

An Empirical Study for Impacts of Measurement Errors on EHR based Association Studies

scientific article

An active learning-enabled annotation system for clinical named entity recognition.

scientific article

An automated approach to calculating the daily dose of tacrolimus in electronic health records.

scientific article published on March 2010

Analyzing differences between chinese and english clinical text: a cross-institution comparison of discharge summaries in two languages

scientific article published on January 2013

Applying active learning to high-throughput phenotyping algorithms for electronic health records data

scientific article

Applying semantic-based probabilistic context-free grammar to medical language processing--a preliminary study on parsing medication sentences

scientific article published on 12 August 2011

Assisted annotation of medical free text using RapTAT.

scientific article

Asthma Exacerbation Prediction and Risk Factor Analysis Based on a Time-Sensitive, Attentive Neural Network: Retrospective Cohort Study

scientific article published on 31 July 2020

Automated Assessment of Medical Students' Clinical Exposures according to AAMC Geriatric Competencies

scientific article published on 14 November 2014

CMTR1 is associated with increased asthma exacerbations in patients taking inhaled corticosteroids

scientific article

COVID-19 SignSym: a fast adaptation of a general clinical NLP tool to identify and normalize COVID-19 signs and symptoms to OMOP common data model

scientific article published in 2021

CTNNA3 and SEMA3D: Promising loci for asthma exacerbation identified through multiple genome-wide association studies

scientific article

Combining human and machine intelligence for clinical trial eligibility querying

scientific article published on 01 June 2022

Comorbidity in Adult Patients Hospitalized with Type 2 Diabetes in Northeast China: An Analysis of Hospital Discharge Data from 2002 to 2013

scientific article

Comparative analysis of pharmacovigilance methods in the detection of adverse drug reactions using electronic medical records.

scientific article published on 17 November 2012

Comparing content coverage in medical curriculum to trainee-authored clinical notes

scientific article

Cost-aware active learning for named entity recognition in clinical text

scientific article published on 01 November 2019

Data from clinical notes: a perspective on the tension between structure and flexible documentation

scientific article

Deciphering Signaling Pathway Networks to Understand the Molecular Mechanisms of Metformin Action

scientific article (publication date: June 2015)

Detecting Adverse Drug Reactions Using Inpatient Medication Orders and Laboratory Tests Data

Detecting abbreviations in discharge summaries using machine learning methods.

scientific article published on 22 October 2011

Development and evaluation of an ensemble resource linking medications to their indications

scientific article (publication date: 2013)

Development of a natural language processing system to identify timing and status of colonoscopy testing in electronic medical records

scientific article

Development of an ensemble resource linking MEDications to their Indications (MEDI).

scientific article published on 18 March 2013

Discovery of Noncancer Drug Effects on Survival in Electronic Health Records of Patients With Cancer: A New Paradigm for Drug Repurposing

scientific article published on 01 May 2019

Evaluation of a Prediction Model for the Development of Atrial Fibrillation in a Repository of Electronic Medical Records

scientific article published on 12 October 2016

Extracting and standardizing medication information in clinical text - the MedEx-UIMA system

scientific article published on 7 April 2014

Extracting epidemiologic exposure and outcome terms from literature using machine learning approaches.

scientific article published in January 2012

Extracting postmarketing adverse events from safety reports in the vaccine adverse event reporting system (VAERS) using deep learning

scientific article published on 01 July 2021

Extracting timing and status descriptors for colonoscopy testing from electronic medical records.

scientific article

Facilitating pharmacogenetic studies using electronic health records and natural-language processing: a case study of warfarin

scientific article published on July 2011

Factors Associated With COVID-19 Death in the United States: Cohort Study

scientific article published on 12 May 2022

Genetic variation in the UGT1A locus is associated with simvastatin efficacy in a clinical practice setting

scientific article

Genotype and risk of major bleeding during warfarin treatment

scientific article

Identifying Metastases-related Information from Pathology Reports of Lung Cancer Patients

scientific article

Identifying potential drugs that induce QT prolongation using electronic medical records

scientific article published on 23 July 2010

Integrating existing natural language processing tools for medication extraction from discharge summaries.

scientific article

MedEx: a medication information extraction system for clinical narratives.

scientific article

Mining Biomedical Literature for Terms related to Epidemiologic Exposures

scientific article

Modeling drug exposure data in electronic medical records: an application to warfarin.

scientific article

Parsing clinical text: how good are the state-of-the-art parsers?

scientific article published on 20 May 2015

Portability of an algorithm to identify rheumatoid arthritis in electronic health records.

scientific article

Predicting warfarin dosage in European-Americans and African-Americans using DNA samples linked to an electronic health record

scientific article

Privacy-Protecting, Reliable Response Data Discovery Using COVID-19 Patient Observations

scientific article published on 23 September 2020

Privacy-protecting, reliable response data discovery using COVID-19 patient observations

scientific article published on 01 July 2021

Risk Factors for Urosepsis after Minimally Invasive Percutaneous Nephrolithotomy in Patients with Preoperative Urinary Tract Infection

scientific article published on 02 January 2020

Syntactic parsing of clinical text: guideline and corpus development with handling ill-formed sentences

scientific article published on August 2013

Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data

scientific article

The application of artificial intelligence and data integration in COVID-19 studies: a scoping review

scientific article published on 06 May 2021

The status and characteristics of urinary stone composition in China

scientific article published on 08 April 2019

The use of a DNA biobank linked to electronic medical records to characterize pharmacogenomic predictors of tacrolimus dose requirement in kidney transplant recipients

scientific article published on January 2012

Validating drug repurposing signals using electronic health records: a case study of metformin associated with reduced cancer mortality

scientific article

List of works by Hua Xu

A comparative study of current Clinical Natural Language Processing systems on handling abbreviations in discharge summaries

A comprehensive study of named entity recognition in Chinese clinical text.

A hybrid system for temporal information extraction from clinical text

A long journey to short abbreviations: developing an open-source framework for clinical abbreviation recognition and disambiguation (CARD).

A prototype application for real-time recognition and disambiguation of clinical abbreviations

A study of active learning methods for named entity recognition in clinical text

A study of machine-learning-based approaches to extract clinical entities and their assertions from discharge summaries.

A study of transportability of an existing smoking status detection module across institutions.

An Empirical Study for Impacts of Measurement Errors on EHR based Association Studies

An active learning-enabled annotation system for clinical named entity recognition.

An automated approach to calculating the daily dose of tacrolimus in electronic health records.

Analyzing differences between chinese and english clinical text: a cross-institution comparison of discharge summaries in two languages

Applying active learning to high-throughput phenotyping algorithms for electronic health records data

Applying semantic-based probabilistic context-free grammar to medical language processing--a preliminary study on parsing medication sentences

Assisted annotation of medical free text using RapTAT.

Asthma Exacerbation Prediction and Risk Factor Analysis Based on a Time-Sensitive, Attentive Neural Network: Retrospective Cohort Study

Automated Assessment of Medical Students' Clinical Exposures according to AAMC Geriatric Competencies

CMTR1 is associated with increased asthma exacerbations in patients taking inhaled corticosteroids

COVID-19 SignSym: a fast adaptation of a general clinical NLP tool to identify and normalize COVID-19 signs and symptoms to OMOP common data model

CTNNA3 and SEMA3D: Promising loci for asthma exacerbation identified through multiple genome-wide association studies

Combining human and machine intelligence for clinical trial eligibility querying

Comorbidity in Adult Patients Hospitalized with Type 2 Diabetes in Northeast China: An Analysis of Hospital Discharge Data from 2002 to 2013

Comparative analysis of pharmacovigilance methods in the detection of adverse drug reactions using electronic medical records.

Comparing content coverage in medical curriculum to trainee-authored clinical notes

Cost-aware active learning for named entity recognition in clinical text

Data from clinical notes: a perspective on the tension between structure and flexible documentation

Deciphering Signaling Pathway Networks to Understand the Molecular Mechanisms of Metformin Action

Detecting Adverse Drug Reactions Using Inpatient Medication Orders and Laboratory Tests Data

Detecting abbreviations in discharge summaries using machine learning methods.

Development and evaluation of an ensemble resource linking medications to their indications

Development of a natural language processing system to identify timing and status of colonoscopy testing in electronic medical records

Development of an ensemble resource linking MEDications to their Indications (MEDI).

Discovery of Noncancer Drug Effects on Survival in Electronic Health Records of Patients With Cancer: A New Paradigm for Drug Repurposing

Evaluation of a Prediction Model for the Development of Atrial Fibrillation in a Repository of Electronic Medical Records

Extracting and standardizing medication information in clinical text - the MedEx-UIMA system

Extracting epidemiologic exposure and outcome terms from literature using machine learning approaches.

Extracting postmarketing adverse events from safety reports in the vaccine adverse event reporting system (VAERS) using deep learning

Extracting timing and status descriptors for colonoscopy testing from electronic medical records.

Facilitating pharmacogenetic studies using electronic health records and natural-language processing: a case study of warfarin

Factors Associated With COVID-19 Death in the United States: Cohort Study

Genetic variation in the UGT1A locus is associated with simvastatin efficacy in a clinical practice setting

Genotype and risk of major bleeding during warfarin treatment

Identifying Metastases-related Information from Pathology Reports of Lung Cancer Patients

Identifying potential drugs that induce QT prolongation using electronic medical records

Integrating existing natural language processing tools for medication extraction from discharge summaries.

MedEx: a medication information extraction system for clinical narratives.

Mining Biomedical Literature for Terms related to Epidemiologic Exposures

Modeling drug exposure data in electronic medical records: an application to warfarin.

Parsing clinical text: how good are the state-of-the-art parsers?

Portability of an algorithm to identify rheumatoid arthritis in electronic health records.

Predicting warfarin dosage in European-Americans and African-Americans using DNA samples linked to an electronic health record

Privacy-Protecting, Reliable Response Data Discovery Using COVID-19 Patient Observations

Privacy-protecting, reliable response data discovery using COVID-19 patient observations

Risk Factors for Urosepsis after Minimally Invasive Percutaneous Nephrolithotomy in Patients with Preoperative Urinary Tract Infection

Syntactic parsing of clinical text: guideline and corpus development with handling ill-formed sentences

Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data

The application of artificial intelligence and data integration in COVID-19 studies: a scoping review

The status and characteristics of urinary stone composition in China

The use of a DNA biobank linked to electronic medical records to characterize pharmacogenomic predictors of tacrolimus dose requirement in kidney transplant recipients

Validating drug repurposing signals using electronic health records: a case study of metformin associated with reduced cancer mortality