List of works - Elissa J Chesler

A Microbe Associated with Sleep Revealed by a Novel Systems Genetic Analysis of the Microbiome in Collaborative Cross Mice

scientific article published on 02 January 2020

A multi-megabase copy number gain causes maternal transmission ratio distortion on mouse chromosome 2

scientific article

A systematic comparison of genome-scale clustering algorithms.

scientific article

Accessing Data Resources in the Mouse Phenome Database for Genetic Analysis of Murine Life Span and Health Span

scientific article

Aging Research Using Mouse Models.

scientific article

Algorithmic tools for tripartite data analysis

Analysis of morphine responses in mice reveals a QTL on Chromosome 7.

scientific article

Applying the ARRIVE Guidelines to an In Vivo Database

scientific article

Association of novelty-related behaviors and intravenous cocaine self-administration in Diversity Outbred mice

scientific article

Author Correction: Comparing phenotypic variation between inbred and outbred mice

scientific article published on 01 February 2019

Author Correction: Comparing phenotypic variation between inbred and outbred mice

scientific article published on 29 July 2020

CbGRiTS: cerebellar gene regulation in time and space.

scientific article published on 23 October 2014

Collaborative Cross and Diversity Outbred data resources in the Mouse Phenome Database

scientific article

Comparing phenotypic variation between inbred and outbred mice.

scientific article published in December 2018

Comparison of threshold selection methods for microarray gene co-expression matrices.

scientific article

Complex genetics of interactions of alcohol and CNS function and behavior

scientific article

Complex trait analysis of gene expression uncovers polygenic and pleiotropic networks that modulate nervous system function

scientific article

Computational, integrative, and comparative methods for the elucidation of genetic coexpression networks

scientific article

Cross-Species Integrative Functional Genomics in GeneWeaver Reveals a Role for Pafah1b1 in Altered Response to Alcohol.

scientific article

Curating gene sets: challenges and opportunities for integrative analysis

article

Dynamic visualization of coexpression in systems genetics data.

scientific article

Extracting gene networks for low-dose radiation using graph theoretical algorithms

scientific article

GeneWeaver: a web-based system for integrative functional genomics.

scientific article published on 12 November 2011

GeneWeaver: data driven alignment of cross-species genomics in biology and disease

scientific article

GeneWeaver: finding consilience in heterogeneous cross-species functional genomics data

scientific article

Genetic networks controlling retinal injury

scientific article

Genetic regulation of Zfp30, CXCL1, and neutrophilic inflammation in murine lung.

scientific article

Genetic variation in hippocampal microRNA expression differences in C57BL/6 J X DBA/2 J (BXD) recombinant inbred mouse strains

scientific article

Genome Reshuffling for Advanced Intercross Permutation (GRAIP): simulation and permutation for advanced intercross population analysis

scientific article

Genome-level analysis of genetic regulation of liver gene expression networks

scientific article

Genome-wide microarray comparison reveals downstream genes of Pax6 in the developing mouse cerebellum

scientific article

High-Resolution Genetic Mapping Using the Mouse Diversity Outbred Population ⬇️

scientific article published on February 1, 2012

High-resolution sex-specific linkage maps of the mouse reveal polarized distribution of crossovers in male germline

scientific article

Identification and ranking of genetic and laboratory environment factors influencing a behavioral trait, thermal nociception, via computational analysis of a large data archive

scientific article

Identification of a QTL in Mus musculus for alcohol preference, withdrawal, and Ap3m2 expression using integrative functional genomics and precision genetics

scientific article

Identification of a novel gene regulating amygdala-mediated fear extinction.

scientific article published on 8 January 2018

Identification of quantitative trait loci for susceptibility to mouse adenovirus type 1

scientific article

Identifying genetic determinants of inflammatory pain in mice using a large-scale gene-targeted screen

scientific article published on 13 September 2021

Identifying genetic loci and spleen gene coexpression networks underlying immunophenotypes in BXD recombinant inbred mice

scientific article

Integration of evidence across human and model organism studies: A meeting report

scientific article published on 24 April 2021

Integration of heterogeneous functional genomics data in gerontology research to find genes and pathway underlying aging across species

article

Integrative Functional Genomics for Systems Genetics in GeneWeaver.org

scientific article published on January 2017

Integrative genetic analysis of allergic inflammation in the murine lung

scientific article

Interpretation of psychiatric genome-wide association studies with multispecies heterogeneous functional genomic data integration

scientific article published on 13 August 2020

KCNN Genes that Encode Small-Conductance Ca2+-Activated K+ Channels Influence Alcohol and Drug Addiction.

scientific article published on 9 February 2015

Male Infertility Is Responsible for Nearly Half of the Extinction Observed in the Mouse Collaborative Cross

scientific article published in June 2017

Microbial glutamate metabolism predicts intravenous cocaine self-administration in Diversity Outbred mice

Mouse Phenotype Database Integration Consortium: integration [corrected] of mouse phenome data resources

scientific article

Natural variation and genetic covariance in adult hippocampal neurogenesis

scholarly article

On finding bicliques in bipartite graphs: a novel algorithm and its application to the integration of diverse biological data types

scientific article

Ontological Discovery Environment: a system for integrating gene-phenotype associations.

scientific article published on 03 September 2009

P2P-R expression is genetically coregulated with components of the translation machinery and with PUM2, a translational repressor that associates with the P2P-R mRNA.

scientific article

Phenotype screening for genetically determined age-onset disorders and increased longevity in ENU-mutagenized mice

scientific article

Precise genetic mapping and integrative bioinformatics in Diversity Outbred mice reveals Hydin as a novel pain gene

scientific article

Prevalence of sexual dimorphism in mammalian phenotypic traits

scientific article

Prospects for finding the mechanisms of sex differences in addiction with human and model organism genetic analysis

scientific article published on 11 February 2020

Quantitative trait locus mapping methods for diversity outbred mice

scientific article

R2d2 Drives Selfish Sweeps in the House Mouse

scientific article published on 15 February 2016

RNA-Seq alignment to individualized genomes improves transcript abundance estimates in multiparent populations.

scientific article

Reconstructing generalized logical networks of transcriptional regulation in mouse brain from temporal gene expression data

scientific article

Reference Trait Analysis Reveals Correlations Between Gene Expression and Quantitative Traits in Disjoint Samples

scientific article published on 21 May 2019

Robust mouse tracking in complex environments using neural networks

scientific article published on 29 March 2019

Sex and strain influence attribution of incentive salience to reward cues in mice

scientific article

Sex-specific gene expression in the BXD mouse liver

scientific article

Supplementing high-density SNP microarrays for additional coverage of disease-related genes: addiction as a paradigm

scientific article

Systems genetics of sensation seeking

scientific article published on 08 October 2018

Testing Pleiotropy vs. Separate QTL in Multiparental Populations

scientific article published on 09 July 2019

Testing pleiotropy vs. separate QTL in multiparental populations

The Major Locus for Mouse Adenovirus Susceptibility Maps to Genes of the Hematopoietic Cell Surface-Expressed LY6 Family

scientific article (publication date: 15 March 2010)

The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences

The heritability of antinociception II: pharmacogenetic mediation of three over-the-counter analgesics in mice

scientific article (publication date: May 2003)

The importance of open-source integrative genomics to drug discovery

scientific article (publication date: May 2010)

The ldis1 lens mutation in RIIIS/J mice maps to chromosome 8 near cadherin 1

scientific journal article

The melanocortin-1 receptor gene mediates female-specific mechanisms of analgesia in mice and humans

scientific article

Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'.

scientific article

Variable sensitivity to noxious heat is mediated by differential expression of the CGRP gene

scientific journal article

WebQTL: rapid exploratory analysis of gene expression and genetic networks for brain and behavior

scientific article (publication date: May 2004)

List of works by Elissa J Chesler

A Microbe Associated with Sleep Revealed by a Novel Systems Genetic Analysis of the Microbiome in Collaborative Cross Mice

A multi-megabase copy number gain causes maternal transmission ratio distortion on mouse chromosome 2

A systematic comparison of genome-scale clustering algorithms.

Accessing Data Resources in the Mouse Phenome Database for Genetic Analysis of Murine Life Span and Health Span

Aging Research Using Mouse Models.

Algorithmic tools for tripartite data analysis

Analysis of morphine responses in mice reveals a QTL on Chromosome 7.

Applying the ARRIVE Guidelines to an In Vivo Database

Association of novelty-related behaviors and intravenous cocaine self-administration in Diversity Outbred mice

Author Correction: Comparing phenotypic variation between inbred and outbred mice

Author Correction: Comparing phenotypic variation between inbred and outbred mice

CbGRiTS: cerebellar gene regulation in time and space.

Collaborative Cross and Diversity Outbred data resources in the Mouse Phenome Database

Comparing phenotypic variation between inbred and outbred mice.

Comparison of threshold selection methods for microarray gene co-expression matrices.

Complex genetics of interactions of alcohol and CNS function and behavior

Complex trait analysis of gene expression uncovers polygenic and pleiotropic networks that modulate nervous system function

Computational, integrative, and comparative methods for the elucidation of genetic coexpression networks

Cross-Species Integrative Functional Genomics in GeneWeaver Reveals a Role for Pafah1b1 in Altered Response to Alcohol.

Curating gene sets: challenges and opportunities for integrative analysis

Dynamic visualization of coexpression in systems genetics data.

Extracting gene networks for low-dose radiation using graph theoretical algorithms

GeneWeaver: a web-based system for integrative functional genomics.

GeneWeaver: data driven alignment of cross-species genomics in biology and disease

GeneWeaver: finding consilience in heterogeneous cross-species functional genomics data

Genetic networks controlling retinal injury

Genetic regulation of Zfp30, CXCL1, and neutrophilic inflammation in murine lung.

Genetic variation in hippocampal microRNA expression differences in C57BL/6 J X DBA/2 J (BXD) recombinant inbred mouse strains

Genome Reshuffling for Advanced Intercross Permutation (GRAIP): simulation and permutation for advanced intercross population analysis

Genome-level analysis of genetic regulation of liver gene expression networks

Genome-wide microarray comparison reveals downstream genes of Pax6 in the developing mouse cerebellum

High-Resolution Genetic Mapping Using the Mouse Diversity Outbred Population ⬇️

High-resolution sex-specific linkage maps of the mouse reveal polarized distribution of crossovers in male germline

Identification and ranking of genetic and laboratory environment factors influencing a behavioral trait, thermal nociception, via computational analysis of a large data archive

Identification of a QTL in Mus musculus for alcohol preference, withdrawal, and Ap3m2 expression using integrative functional genomics and precision genetics

Identification of a novel gene regulating amygdala-mediated fear extinction.

Identification of quantitative trait loci for susceptibility to mouse adenovirus type 1

Identifying genetic determinants of inflammatory pain in mice using a large-scale gene-targeted screen

Identifying genetic loci and spleen gene coexpression networks underlying immunophenotypes in BXD recombinant inbred mice

Integration of evidence across human and model organism studies: A meeting report

Integration of heterogeneous functional genomics data in gerontology research to find genes and pathway underlying aging across species

Integrative Functional Genomics for Systems Genetics in GeneWeaver.org

Integrative genetic analysis of allergic inflammation in the murine lung

Interpretation of psychiatric genome-wide association studies with multispecies heterogeneous functional genomic data integration

KCNN Genes that Encode Small-Conductance Ca2+-Activated K+ Channels Influence Alcohol and Drug Addiction.

Male Infertility Is Responsible for Nearly Half of the Extinction Observed in the Mouse Collaborative Cross

Microbial glutamate metabolism predicts intravenous cocaine self-administration in Diversity Outbred mice

Mouse Phenotype Database Integration Consortium: integration [corrected] of mouse phenome data resources

Natural variation and genetic covariance in adult hippocampal neurogenesis

On finding bicliques in bipartite graphs: a novel algorithm and its application to the integration of diverse biological data types

Ontological Discovery Environment: a system for integrating gene-phenotype associations.

P2P-R expression is genetically coregulated with components of the translation machinery and with PUM2, a translational repressor that associates with the P2P-R mRNA.

Phenotype screening for genetically determined age-onset disorders and increased longevity in ENU-mutagenized mice

Precise genetic mapping and integrative bioinformatics in Diversity Outbred mice reveals Hydin as a novel pain gene

Prevalence of sexual dimorphism in mammalian phenotypic traits

Prospects for finding the mechanisms of sex differences in addiction with human and model organism genetic analysis

Quantitative trait locus mapping methods for diversity outbred mice

R2d2 Drives Selfish Sweeps in the House Mouse

RNA-Seq alignment to individualized genomes improves transcript abundance estimates in multiparent populations.

Reconstructing generalized logical networks of transcriptional regulation in mouse brain from temporal gene expression data

Reference Trait Analysis Reveals Correlations Between Gene Expression and Quantitative Traits in Disjoint Samples

Robust mouse tracking in complex environments using neural networks

Sex and strain influence attribution of incentive salience to reward cues in mice

Sex-specific gene expression in the BXD mouse liver

Supplementing high-density SNP microarrays for additional coverage of disease-related genes: addiction as a paradigm

Systems genetics of sensation seeking

Testing Pleiotropy vs. Separate QTL in Multiparental Populations

Testing pleiotropy vs. separate QTL in multiparental populations

The Major Locus for Mouse Adenovirus Susceptibility Maps to Genes of the Hematopoietic Cell Surface-Expressed LY6 Family

The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences

The heritability of antinociception II: pharmacogenetic mediation of three over-the-counter analgesics in mice

The importance of open-source integrative genomics to drug discovery

The ldis1 lens mutation in RIIIS/J mice maps to chromosome 8 near cadherin 1

The melanocortin-1 receptor gene mediates female-specific mechanisms of analgesia in mice and humans

Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'.

Variable sensitivity to noxious heat is mediated by differential expression of the CGRP gene

WebQTL: rapid exploratory analysis of gene expression and genetic networks for brain and behavior