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List of works by Suman Ranjan Das

741. Impact of Adenovirus Co-detections on Illness Severity

A two-pronged mechanism for HIV-1 Nef-mediated endocytosis of immune costimulatory molecules CD80 and CD86.

scientific article published on March 2007

Antibody pressure by a human monoclonal antibody targeting the 2009 pandemic H1N1 virus hemagglutinin drives the emergence of a virus with increased virulence in mice

scientific article

Author Correction: Microbiome disturbance and resilience dynamics of the upper respiratory tract during influenza A virus infection

scientific article published on 16 June 2020

Biology of the HIV Nef protein.

scientific article

Broadly cross-reactive antibodies dominate the human B cell response against 2009 pandemic H1N1 influenza virus infection

scientific article

Broadly cross-reactive antibodies dominate the human B cell response against 2009 pandemic H1N1 influenza virus infection

scientific article published on 7 February 2011

Chronic rhinosinusitis in elderly patients is associated with an exaggerated neutrophilic proinflammatory response to pathogenic bacteria

scientific article published on 22 November 2018

Complex Epidemiological Dynamics of Eastern Equine Encephalitis Virus in Florida

scientific article published on 01 May 2019

Comprehensive Genome Scale Phylogenetic Study Provides New Insights on the Global Expansion of Chikungunya Virus

scientific article published on 21 September 2016

Contemporary Circulating Enterovirus D68 Strains Have Acquired the Capacity for Viral Entry and Replication in Human Neuronal Cells

scientific article published on 16 October 2018

Contemporary circulating enterovirus D68 strains show differential viral entry and replication in human neuronal cells

Correction: Influenza A Virus Negative Strand RNA Is Translated for CD8 T Cell Immunosurveillance

scientific article published on 24 August 2018

Correction: Relative Importance and Additive Effects of Maternal and Infant Risk Factors on Childhood Asthma

scientific article published on 24 May 2016

Cotton rat lung transcriptome reveals host immune response to Respiratory Syncytial Virus infection

scientific article published in Scientific Reports

Cysteinyl-tRNA deacylation can be uncoupled from protein synthesis

scientific article

Deep Sequencing of Influenza A Virus from a Human Challenge Study Reveals a Selective Bottleneck and Only Limited Intrahost Genetic Diversification

scientific article published on 05 October 2016

Defining B cell immunodominance to viruses

scientific article published on 13 February 2017

Defining influenza A virus hemagglutinin antigenic drift by sequential monoclonal antibody selection

scientific article published on March 2013

Dietary Arginine Regulates Severity of Experimental Colitis and Affects the Colonic Microbiome

scientific article published in 2019

Differences in the Nasopharyngeal Microbiome During Acute Respiratory Tract Infection With Human Rhinovirus and Respiratory Syncytial Virus in Infancy

scientific article

Differing epidemiological dynamics of Chikungunya virus in the Americas during the 2014-2015 epidemic

scholarly article by Yi Tan et al published July 2018 in PLoS Neglected Tropical Diseases

Distinct mucosal microbial communities in infants with surgical necrotizing enterocolitis correlate with age and antibiotic exposure

scientific article published in PLoS ONE

Diversifying Selection Analysis Predicts Antigenic Evolution of 2009 Pandemic H1N1 Influenza A Virus in Humans.

scientific article

Efficient cross-priming of antiviral CD8+ T cells by antigen donor cells is GRP94 independent

scientific article published on 14 September 2009

Enterovirus D-68 Infection, Prophylaxis, and Vaccination in a Novel Permissive Animal Model, the Cotton Rat (Sigmodon hispidus).

scientific article

Erratum: Evolutionary dynamics and molecular epidemiology of West Nile virus in New York State: 1999-2015

scientific article published on 01 July 2019

Evolution and spread of Venezuelan equine encephalitis complex alphavirus in the Americas

scientific article published on 3 August 2017

Evolutionary Dynamics of Influenza A Viruses in US Exhibition Swine.

scientific article

Evolutionary dynamics and molecular epidemiology of in New York State: 1999-2015

scientific article published on 21 July 2019

First Complete Genome Sequences of Two Keystone Viruses from Florida

scientific article

Fitness costs limit influenza A virus hemagglutinin glycosylation as an immune evasion strategy.

scientific article published on 21 November 2011

Genomic analysis of serologically untypable human enteroviruses in Taiwan

scientific article published on 03 July 2019

Glycosylation focuses sequence variation in the influenza A virus H1 hemagglutinin globular domain.

scientific article

HIV-1 Nef induces a Rab11-dependent routing of endocytosed immune costimulatory proteins CD80 and CD86 to the Golgi

scientific article published on 07 August 2008

HIV-1 Nef promotes endocytosis of cell surface MHC class II molecules via a constitutive pathway

scientific article

Hemagglutinin receptor binding avidity drives influenza A virus antigenic drift

scientific article

Infant Viral Respiratory Infection Nasal Immune-Response Patterns and Their Association with Subsequent Childhood Recurrent Wheeze

scientific article published on 01 October 2018

Influenza A Virus Negative Strand RNA Is Translated for CD8 T Cell Immunosurveillance

scholarly article by Heather D Hickman et al published 15 August 2018 in Journal of Immunology

Influenza A virus hemagglutinin antibody escape promotes neuraminidase antigenic variation and drug resistance

scientific article

Influenza A virus hemagglutinin trimerization completes monomer folding and antigenicity

scientific article published on 03 July 2013

Innate immune and chemically triggered oxidative stress modifies translational fidelity.

scientific article

Introduction, Evolution, and Dissemination of Influenza A Viruses in Exhibition Swine in the United States during 2009 to 2013.

scientific article

Lack of selective resistance of influenza A virus in presence of host-targeted antiviral, UV-4B

scientific article published on 16 May 2019

Large scale complete genome sequencing and phylodynamic analysis of eastern equine encephalitis virus reveal source-sink transmission dynamics in the United States

scientific article published on 4 April 2018

Long-term surveillance of H7 influenza viruses in American wild aquatic birds: are the H7N3 influenza viruses in wild birds the precursors of highly pathogenic strains in domestic poultry?

scientific article published on 17 June 2015

Microbiome disturbance and resilience dynamics of the upper respiratory tract during influenza A virus infection

scientific article published on 21 May 2020

Microbiome disturbance and resilience dynamics of the upper respiratory tract in response to influenza A virus infection in analog hosts

article

Minimally Invasive Sampling Method Identifies Differences in Taxonomic Richness of Nasal Microbiomes in Young Infants Associated with Mode of Delivery.

scientific article published on 14 September 2015

Molecular Evolution and Intraclade Recombination of Enterovirus D68 during the 2014 Outbreak in the United States

scientific article published on 9 December 2015

Molecular analysis and phylogenetic characterization of HIV in Iran

scientific article published in July 2006

Molecular characterization of respiratory syncytial viruses circulating in a paediatric cohort in Amman, Jordan

scientific article published on 18 September 2019

Molecular epidemiology of human enterovirus 71 at the origin of an epidemic of fatal hand, foot and mouth disease cases in Cambodia

scientific article published on 21 September 2016

Mouse monoclonal antibodies to anthrax edema factor protect against infection

scientific article published on 12 September 2011

Multiple introductions and antigenic mismatch with vaccines may contribute to increased predominance of G12P[8] rotaviruses in the United States ⬇️

scientific article published on 10 December 2018

Nasopharyngeal Haemophilus and Local Immune Response during Infant Respiratory Syncytial Virus Infection

scientific article published on 03 July 2020

Nasopharyngeal Lactobacillus is Associated with Childhood Wheezing Illnesses Following Acute Respiratory Syncytial Virus Infection in Infancy

scientific article published on 9 January 2018

Nasopharyngeal Microbiome in Respiratory Syncytial Virus Resembles Profile Associated with Increased Childhood Asthma Risk

scientific article published on May 2016

Nearly Complete Genome Sequences of 17 Enterovirus D68 Strains from Kansas City, Missouri, 2018

scientific article published on 07 November 2019

Objectives, design and enrollment results from the Infant Susceptibility to Pulmonary Infections and Asthma Following RSV Exposure Study (INSPIRE).

scientific article published on 30 April 2015

Oligomerization of the human immunodeficiency virus type 1 (HIV-1) Vpu protein--a genetic, biochemical and biophysical analysis

scientific article published on 29 August 2007

Pandemic H1N1 influenza vaccine induces a recall response in humans that favors broadly cross-reactive memory B cells

scientific article

Patterns of olfactory dysfunction in chronic rhinosinusitis identified by hierarchical cluster analysis and machine learning algorithms

scientific article published on 28 November 2018

Phylodynamics of Enterovirus A71-Associated Hand, Foot, and Mouth Disease in Viet Nam.

scientific article published on 17 June 2015

Poisson boundaries of finite von Neumann algebras ⬇️

doctoral dissertation

Poor immunogenicity, not vaccine strain egg adaptation, may explain the low H3N2 influenza vaccine effectiveness in 2012-13.

scientific article published on 20 February 2018

RNA binding targets aminoacyl-tRNA synthetases to translating ribosomes.

scientific article

Rapidly fatal pneumonitis from immunotherapy and concurrent SARS-CoV-2 infection in a patient with newly diagnosed lung cancer

scientific article published on 02 May 2020

Reassortment of Influenza A Viruses in Wild Birds in Alaska before H5 Clade 2.3.4.4 Outbreaks

scientific article published on April 2017

Relative Importance and Additive Effects of Maternal and Infant Risk Factors on Childhood Asthma

scientific article

Respiratory Syncytial Virus whole-genome sequencing identifies convergent evolution of sequence duplication in the C-terminus of the G gene

scientific article published on 23 May 2016

Role of HIV-1 subtype C envelope V3 to V5 regions in viral entry, coreceptor utilization and replication efficiency in primary T-lymphocytes and monocyte-derived macrophages

scientific article published on 24 November 2007

Spread and persistence of influenza A viruses in waterfowl hosts in the North American Mississippi migratory flyway

scientific article

Structure and accessibility of HA trimers on intact 2009 H1N1 pandemic influenza virus to stem region-specific neutralizing antibodies

scientific article

The Nef protein of HIV-1 induces loss of cell surface costimulatory molecules CD80 and CD86 in APCs

scientific article published on October 2005

The Salivary Microbiome Is Altered in Children With Eosinophilic Esophagitis and Correlates With Disease Activity

scientific article published on 01 June 2019

The effective rate of influenza reassortment is limited during human infection

scientific article

The emergence and evolution of influenza A (H1α) viruses in swine in Canada and the United States

scientific article published on 23 October 2017

The soft palate is an important site of adaptation for transmissible influenza viruses

scientific article

The transmission dynamics and diversity of human metapneumovirus in Peru.

scientific article published on 29 December 2017

Three adjacent nucleotide changes spanning two residues in SARS-CoV-2 nucleoprotein: possible homologous recombination from the transcription-regulating sequence

scientific article published on 12 April 2020

UPF1 is crucial for the infectivity of human immunodeficiency virus type 1 progeny virions.

scientific article published on 19 June 2013

Whole-genome sequencing and analyses identify high genetic heterogeneity, diversity and endemicity of rotavirus genotype P[6] strains circulating in Africa

scientific article published on 18 May 2018

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