List of works - Wei Zheng

A Novel Method for Drug Screen to Regulate G Protein-Coupled Receptors in the Metabolic Network of Alzheimer's Disease.

scientific article published on 20 February 2018

A large-scale comparative assessment of methods for residue-residue contact prediction

scientific article

An ensemble method for prediction of conformational B-cell epitopes from antigen sequences.

scientific article published on 18 February 2014

Analysis of Conformational B-Cell Epitopes in the Antibody-Antigen Complex Using the Depth Function and the Convex Hull

scientific article published on 5 August 2015

BindProfX: Assessing Mutation-Induced Binding Affinity Change by Protein Interface Profiles with Pseudo-Counts.

scientific article

Cryo-EM structure of the human MLL1 core complex bound to the nucleosome

scientific article published on 05 December 2019

Decoding the link of microbiome niches with homologous sequences enables accurately targeted protein structure prediction

scientific article published in 2021

Deep-learning contact-map guided protein structure prediction in CASP13

scientific article published on 14 August 2019

Detecting distant-homology protein structures by aligning deep neural-network based contact maps

scientific article published on 17 October 2019

Effects of SARS-CoV-2 mutations on protein structures and intraviral protein-protein interactions

scientific article published on 14 October 2020

Exploring the molecular mechanism of action between drug and RNA polymerase based on partially-resolved spatial structures.

scientific article published on December 2013

Functions of Essential Genes and a Scale-Free Protein Interaction Network Revealed by Structure-Based Function and Interaction Prediction for a Minimal Genome

scientific article published on 04 January 2021

Genome-wide interaction analysis of quantitative traits in outbred mice.

scientific article published on 20 April 2015

I-TASSER gateway: A protein structure and function prediction server powered by XSEDE ⬇️

journal article from 'Future generations computer systems: FGCS' published in 2019

Improved Species-Specific Lysine Acetylation Site Prediction Based on a Large Variety of Features Set.

scientific article

Improving deep learning protein monomer and complex structure prediction using DeepMSA2 with huge metagenomics data

scientific article published in 2024

LOMETS2: improved meta-threading server for fold-recognition and structure-based function annotation for distant-homology proteins

scientific article published on 01 July 2019

MetaGO: Predicting Gene Ontology of Non-homologous Proteins Through Low-Resolution Protein Structure Prediction and Protein-Protein Network Mapping

scientific article published on 10 March 2018

Novel numerical characterization of protein sequences based on individual amino acid and its application.

scientific article published on 2 February 2015

PrAS: Prediction of amidation sites using multiple feature extraction.

scientific article published on 29 November 2016

Protein Structure and Sequence Reanalysis of 2019-nCoV Genome Refutes Snakes as Its Intermediate Host and the Unique Similarity between Its Spike Protein Insertions and HIV-1

scientific article published on 24 March 2020

Protein structural features predict responsiveness to pharmacological chaperone treatment for three lysosomal storage disorders

scientific article published on 16 September 2021

Publisher Correction: Cryo-EM structure of the human MLL1 core complex bound to the nucleosome

scientific article published on 27 February 2020

Quad-PRE: a hybrid method to predict protein quaternary structure attributes

scientific article

Recent Progress of Protein Tertiary Structure Prediction

scientific article published in 2024

SSIPe: accurately estimating protein-protein binding affinity change upon mutations using evolutionary profiles in combination with an optimized physical energy function

scientific article published on 12 December 2019

Two-Level Protein Methylation Prediction using structure model-based features

scientific article published on 07 April 2020

gDNA-Prot: Predict DNA-binding proteins by employing support vector machine and a novel numerical characterization of protein sequence

scientific article

newDNA-Prot: Prediction of DNA-binding proteins by employing support vector machine and a comprehensive sequence representation

scientific article

List of works by Wei Zheng

A Novel Method for Drug Screen to Regulate G Protein-Coupled Receptors in the Metabolic Network of Alzheimer's Disease.

A large-scale comparative assessment of methods for residue-residue contact prediction

An ensemble method for prediction of conformational B-cell epitopes from antigen sequences.

Analysis of Conformational B-Cell Epitopes in the Antibody-Antigen Complex Using the Depth Function and the Convex Hull

BindProfX: Assessing Mutation-Induced Binding Affinity Change by Protein Interface Profiles with Pseudo-Counts.

Cryo-EM structure of the human MLL1 core complex bound to the nucleosome

Decoding the link of microbiome niches with homologous sequences enables accurately targeted protein structure prediction

Deep-learning contact-map guided protein structure prediction in CASP13

Detecting distant-homology protein structures by aligning deep neural-network based contact maps

Effects of SARS-CoV-2 mutations on protein structures and intraviral protein-protein interactions

Exploring the molecular mechanism of action between drug and RNA polymerase based on partially-resolved spatial structures.

Functions of Essential Genes and a Scale-Free Protein Interaction Network Revealed by Structure-Based Function and Interaction Prediction for a Minimal Genome

Genome-wide interaction analysis of quantitative traits in outbred mice.

I-TASSER gateway: A protein structure and function prediction server powered by XSEDE ⬇️

Improved Species-Specific Lysine Acetylation Site Prediction Based on a Large Variety of Features Set.

Improving deep learning protein monomer and complex structure prediction using DeepMSA2 with huge metagenomics data

LOMETS2: improved meta-threading server for fold-recognition and structure-based function annotation for distant-homology proteins

MetaGO: Predicting Gene Ontology of Non-homologous Proteins Through Low-Resolution Protein Structure Prediction and Protein-Protein Network Mapping

Novel numerical characterization of protein sequences based on individual amino acid and its application.

PrAS: Prediction of amidation sites using multiple feature extraction.

Protein Structure and Sequence Reanalysis of 2019-nCoV Genome Refutes Snakes as Its Intermediate Host and the Unique Similarity between Its Spike Protein Insertions and HIV-1

Protein structural features predict responsiveness to pharmacological chaperone treatment for three lysosomal storage disorders

Publisher Correction: Cryo-EM structure of the human MLL1 core complex bound to the nucleosome

Quad-PRE: a hybrid method to predict protein quaternary structure attributes

Recent Progress of Protein Tertiary Structure Prediction

SSIPe: accurately estimating protein-protein binding affinity change upon mutations using evolutionary profiles in combination with an optimized physical energy function

Two-Level Protein Methylation Prediction using structure model-based features

gDNA-Prot: Predict DNA-binding proteins by employing support vector machine and a novel numerical characterization of protein sequence

newDNA-Prot: Prediction of DNA-binding proteins by employing support vector machine and a comprehensive sequence representation