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List of works by Brooke L Fridley

"I think that a brief conversation from their provider can go a very long way": Patient and provider perspectives on barriers and facilitators of genetic testing after ovarian cancer

scientific article published on 25 September 2020

179 Clinical Characteristics of Familial Irritable Bowel Syndrome (IBS) Differ from Sporadic IBS

A Bayesian Integrative Genomic Model for Pathway Analysis of Complex Traits ⬇️

scientific article published on March 28, 2012

A Bayesian hierarchical nonlinear model for assessing the association between genetic variation and drug cytotoxicity

scientific article published on September 2009

A Curated Cancer Clinical Outcomes Database (C3OD) for accelerating patient recruitment in cancer clinical trials

scientific article published on 10 July 2018

A Latent Model for Prioritization of SNPs for Functional Studies ⬇️

scientific article published on June 8, 2011

A Question-and-Answer System to Extract Data From Free-Text Oncological Pathology Reports (CancerBERT Network): Development Study

scientific article published on 23 March 2022

A genome-wide association study identifies a new ovarian cancer susceptibility locus on 9p22.2.

scientific article

A genome-wide association study identifies susceptibility loci for ovarian cancer at 2q31 and 8q24.

scientific article published on 19 September 2010

A low-frequency variant at 8q24.21 is strongly associated with risk of oligodendroglial tumors and astrocytomas with IDH1 or IDH2 mutation

scientific article published on 26 August 2012

A targeted genetic association study of epithelial ovarian cancer susceptibility

scientific article published on February 2016

ABCA transporter gene expression and poor outcome in epithelial ovarian cancer

scientific article

ABCB1 (MDR1) polymorphisms and ovarian cancer progression and survival: a comprehensive analysis from the Ovarian Cancer Association Consortium and The Cancer Genome Atlas

scientific article published on August 2013

ABO blood group and risk of epithelial ovarian cancer within the Ovarian Cancer Association Consortium

scientific article

Acetaminophen-NAPQI Hepatotoxicity: A Cell Line Model System Genome-Wide Association Study ⬇️

scientific article published on December 22, 2010

Acquired chromosomal anomalies in chronic lymphocytic leukemia patients compared with more than 50,000 quasi-normal participants

scientific article

Adult body mass index and risk of ovarian cancer by subtype: a Mendelian randomization study

scientific article published on 10 July 2016

Adult height is associated with increased risk of ovarian cancer: a Mendelian randomisation study

scientific article published on 20 March 2018

An ensemble-based Cox proportional hazards regression framework for predicting survival in metastatic castration-resistant prostate cancer (mCRPC) patients

scientific article published on 16 November 2016

An evolutionary framework for treating pediatric sarcomas

scientific article published on 16 March 2020

An integrative approach to assess X-chromosome inactivation using allele-specific expression with applications to epithelial ovarian cancer.

scientific article

Analysis of over 10,000 Cases finds no association between previously reported candidate polymorphisms and ovarian cancer outcome

scientific article published on 19 March 2013

Analysis of variation in NF-kappaB genes and expression levels of NF-kappaB-regulated molecules

scientific article

Assessing the genetic architecture of epithelial ovarian cancer histological subtypes

scientific article

Assessment of ASC specks as a putative biomarker of pyroptosis in myelodysplastic syndromes: an observational cohort study.

scientific article published on 30 July 2018

Assessment of Multifactor Gene-Environment Interactions and Ovarian Cancer Risk: Candidate Genes, Obesity, and Hormone-Related Risk Factors

scientific article

Assessment of data transformations for model-based clustering of RNA-Seq data

scientific article published on 27 February 2018

Assessment of genotype imputation methods

scientific article

Assessment of hepatocyte growth factor in ovarian cancer mortality

scientific article

Assessment of variation in immunosuppressive pathway genes reveals TGFBR2 to be associated with risk of clear cell ovarian cancer

scientific article published on 21 June 2016

Association between BRCA1 and BRCA2 mutations and survival in women with invasive epithelial ovarian cancer

scientific article

Association between endometriosis and risk of histological subtypes of ovarian cancer: a pooled analysis of case-control studies

scientific article published in April 2012

Association of TNFSF8 polymorphisms with peripheral neutrophil count

scientific article

Association of vitamin D levels and risk of ovarian cancer: a Mendelian randomization study

scientific article published on 4 September 2016

Associations of High-Grade Glioma With Glioma Risk Alleles and Histories of Allergy and Smoking ⬇️

scientific article published on July 8, 2011

Bayesian genomic models for the incorporation of pathway topology knowledge into association studies ⬇️

scientific article published on August 1, 2013

Bayesian mixture models for the incorporation of prior knowledge to inform genetic association studies

scientific article

Bayesian variable and model selection methods for genetic association studies

scientific article published in January 2009

Betaine-homocysteine methyltransferase: Human liver genotype–phenotype correlation ⬇️

scientific article published on October 21, 2010

Biomarker-based ovarian carcinoma typing: a histologic investigation in the ovarian tumor tissue analysis consortium

scientific article published on 23 July 2013

CYP19A1 fine-mapping and Mendelian randomization: estradiol is causal for endometrial cancer

scientific article

Candidate gene analysis using imputed genotypes: cell cycle single-nucleotide polymorphisms and ovarian cancer risk

scientific article published on 03 March 2009

Candidate locus analysis of the TERT-CLPTM1L cancer risk region on chromosome 5p15 identifies multiple independent variants associated with endometrial cancer risk

scientific article published in February 2015

Cell cycle genes and ovarian cancer susceptibility: a tagSNP analysis

scientific article published on 08 September 2009

Characterization of fusion genes in common and rare epithelial ovarian cancer histologic subtypes

scientific article published on April 2017

Chronic Recreational Physical Inactivity and Epithelial Ovarian Cancer Risk

article

Chronic Recreational Physical Inactivity and Epithelial Ovarian Cancer Risk: Evidence from the Ovarian Cancer Association Consortium

scientific article

Cigarette smoking and risk of ovarian cancer: a pooled analysis of 21 case-control studies

scientific article published on 02 March 2013

Cigarette smoking is associated with adverse survival among women with ovarian cancer: Results from a pooled analysis of 19 studies

scientific article

Cis-eQTL analysis and functional validation of candidate susceptibility genes for high-grade serous ovarian cancer

scientific article published on 22 September 2015

Clinical and Emergent Biomarkers and Their Relationship to the Prognosis of Ovarian Cancer

scientific article published on 19 January 2016

Clinical characteristics of ovarian cancer classified by BRCA1, BRCA2, and RAD51C status

scientific article

Clinical validation of genetic variants associated with in vitro chemotherapy-related lymphoblastoid cell toxicity

scientific article published on 9 May 2017

Colorectal cancer linkage on chromosomes 4q21, 8q13, 12q24, and 15q22.

scientific article

Combined and interactive effects of environmental and GWAS-identified risk factors in ovarian cancer

scientific article published on 05 March 2013

Common Genetic Variation In Cellular Transport Genes and Epithelial Ovarian Cancer (EOC) Risk

scientific article published on 19 June 2015

Common Genetic Variation in Circadian Rhythm Genes and Risk of Epithelial Ovarian Cancer (EOC).

scientific article

Common variants at 19p13 are associated with susceptibility to ovarian cancer

scientific article

Common variants at the CHEK2 gene locus and risk of epithelial ovarian cancer

scientific article

Common variation in Nemo-like kinase is associated with risk of ovarian cancer

scientific article published on 17 January 2012

Comparison of normalization approaches for gene expression studies completed with high-throughput sequencing

scientific article published in PLoS ONE

Comparison of penalty functions for sparse canonical correlation analysis ⬇️

scientific article published on February 1, 2012

Comparison of tagging single-nucleotide polymorphism methods in association analyses

scientific article

Comparison of variable and model selection methods for genetic association studies using the GAW15 simulated data

scientific article

Complement component 3 (C3) haplotypes and risk of advanced age-related macular degeneration

scientific article published on 21 February 2009

Comprehensive Cross-Population Analysis of High-Grade Serous Ovarian Cancer Supports No More Than Three Subtypes

scientific article published on 11 October 2016

Comprehensive cross-population analysis of high-grade serous ovarian cancer supports no more than three subtypes

Comprehensive genetic assessment of the ESR1 locus identifies a risk region for endometrial cancer

scientific article published in October 2015

Conference Scene: Lessons learned from the 5th Statistical Analysis Workshop of the Pharmacogenetics Research Network

scientific article published on 01 March 2010

Confirmation of linkage to and localization of familial colon cancer risk haplotype on chromosome 9q22.

scientific article

Consortium analysis of gene and gene-folate interactions in purine and pyrimidine metabolism pathways with ovarian carcinoma risk

scientific article

Contribution of FKBP5 genetic variation to gemcitabine treatment and survival in pancreatic adenocarcinoma

scientific article

Contribution of Germline Mutations in the RAD51B, RAD51C, and RAD51D Genes to Ovarian Cancer in the Population

scientific article published on 10 September 2015

Correction: Colorectal Cancer Linkage on Chromosomes 4q21, 8q13, 12q24, and 15q22.

scientific article published on 6 November 2012

Correction: Evaluation of Clustering and Genotype Distribution for Replication in Genome Wide Association Studies: The Age-Related Eye Disease Study

scientific article published on 8 December 2008

Cross Cancer Genomic Investigation of Inflammation Pathway for Five Common Cancers: Lung, Ovary, Prostate, Breast, and Colorectal Cancer

scientific article

DNA Methylation in Ovarian Cancer Susceptibility

scientific article published on 31 December 2020

Density of common complex ocular traits in the aging eye: analysis of secondary traits in genome-wide association studies

scientific article

Diagnostic tools in linkage analysis for quantitative traits

scientific article published in May 2003

Differential roles of ERRFI1 in EGFR and AKT pathway regulation affect cancer proliferation

scientific article published on 15 January 2018

Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines

scientific article published on February 2014

Distinct germ line polymorphisms underlie glioma morphologic heterogeneity

scientific article

Dose-Response Association of CD8+ Tumor-Infiltrating Lymphocytes and Survival Time in High-Grade Serous Ovarian Cancer.

scientific article published on 12 October 2017

Drug discovery using clinical outcome-based Connectivity Mapping: application to ovarian cancer

scientific article

ESR1/SYNE1 polymorphism and invasive epithelial ovarian cancer risk: an Ovarian Cancer Association Consortium study

scientific article

Ecto-5'-nucleotidase and thiopurine cellular circulation: association with cytotoxicity

scientific article

Enabling Precision Medicine in Cancer Care Through a Molecular Data Warehouse: The Moffitt Experience

scientific article published on 01 May 2021

Epigenetic analysis leads to identification of HNF1B as a subtype-specific susceptibility gene for ovarian cancer

scientific article published in 2013

Epigenome-wide ovarian cancer analysis identifies a methylation profile differentiating clear-cell histology with epigenetic silencing of the HERG K+ channel

scientific article published on 09 April 2013

Epithelial-Mesenchymal Transition (EMT) Gene Variants and Epithelial Ovarian Cancer (EOC) Risk

scientific article

Erratum: Corrigendum: Common variants at 19p13 are associated with susceptibility to ovarian cancer

scholarly article published in Nature Genetics

European American stratification in ovarian cancer case control data: the utility of genome-wide data for inferring ancestry

scientific article

Evaluating the ovarian cancer gonadotropin hypothesis: a candidate gene study

scientific article published on 17 December 2014

Evaluation of clustering and genotype distribution for replication in genome wide association studies: the age-related eye disease study

scientific article

Evidence for a time-dependent association between FOLR1 expression and survival from ovarian carcinoma: implications for clinical testing. An Ovarian Tumour Tissue Analysis consortium study

scientific article

Exome genotyping arrays to identify rare and low frequency variants associated with epithelial ovarian cancer risk

scientific article published on 4 July 2016

Expression of Sestrin Genes in Radiotherapy for Prostate Cancer and Its Association With Fatigue: A Proof-of-Concept Study

scientific article published in January 2018

Expression signature distinguishing two tumour transcriptome classes associated with progression-free survival among rare histological types of epithelial ovarian cancer

scientific article published on 02 June 2016

FKBP5 genetic variation: association with selective serotonin reuptake inhibitor treatment outcomes in major depressive disorder

scientific article published on March 2013

FKBP51 affects cancer cell response to chemotherapy by negatively regulating Akt.

scientific article

Familial aggregation of irritable bowel syndrome: a family case-control study.

scientific article

Fine-mapping of the HNF1B multicancer locus identifies candidate variants that mediate endometrial cancer risk

scientific article

Five endometrial cancer risk loci identified through genome-wide association analysis

scientific article published on 02 May 2016

Functional genetic polymorphisms in the aromatase gene CYP19 vary the response of breast cancer patients to neoadjuvant therapy with aromatase inhibitors

scientific article

Functional mechanisms underlying pleiotropic risk alleles at the 19p13.1 breast-ovarian cancer susceptibility locus

scientific article published on 7 September 2016

Functional polymorphisms in the TERT promoter are associated with risk of serous epithelial ovarian and breast cancers

scientific article

GMSimpute: a generalized two-step Lasso approach to impute missing values in label-free mass spectrum analysis

scientific article published on 01 January 2020

GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer

scientific article published on April 2013

Gemcitabine and arabinosylcytosin pharmacogenomics: genome-wide association and drug response biomarkers

scientific article

Gemcitabine and cytosine arabinoside cytotoxicity: association with lymphoblastoid cell expression

scientific article published on September 2008

Gemcitabine metabolic pathway genetic polymorphisms and response in patients with non-small cell lung cancer ⬇️

scientific article published on February 1, 2012

Gender Bias in Human Systemic Lupus Erythematosus: A Problem of Steroid Receptor Action?

scientific article published on 28 March 2018

Gene Expression, and Fatigue in Puerto Rican Men during Radiotherapy for Prostate Cancer: an Exploratory Study

scientific article published in December 2017

Gene set analysis of SNP data: benefits, challenges, and future directions ⬇️

scientific article published on April 13, 2011

Gene set analysis of purine and pyrimidine antimetabolites cancer therapies

scientific article

Gene set analysis of survival following ovarian cancer implicates macrolide binding and intracellular signaling genes

scientific article published on 2 February 2012

Genetic Breast Cancer Susceptibility Variants and Prognosis in the Prospectively Randomized SUCCESS A Study

scientific article published on 28 June 2017

Genetic Risk Score Mendelian Randomization Shows that Obesity Measured as Body Mass Index, but not Waist:Hip Ratio, Is Causal for Endometrial Cancer

scientific article published on 22 August 2016

Genetic Variation Predicting Cisplatin Cytotoxicity Associated with Overall Survival in Lung Cancer Patients Receiving Platinum-Based Chemotherapy ⬇️

scientific article published on July 20, 2011

Genetic analyses of gynecological disease identify genetic relationships between uterine fibroids and endometrial cancer, and a novel endometrial cancer genetic risk region at the WNT4 1p36.12 locus

scientific article published on 15 July 2021

Genetic association studies of copy-number variation: should assignment of copy number states precede testing?

scientific article

Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study

scientific article

Genetic regulation of beta-ureidopropionase and its possible implication in altered uracil catabolism

scientific article

Genetic regulation of dihydropyrimidinase and its possible implication in altered uracil catabolism

scientific article

Genetic variation in TYMS in the one-carbon transfer pathway is associated with ovarian carcinoma types in the Ovarian Cancer Association Consortium

scientific article

Genetic variation in platinating agent and taxane pathway genes as predictors of outcome and toxicity in advanced non-small-cell lung cancer

scientific article

Genetic variations associated with gemcitabine treatment outcome in pancreatic cancer.

scientific article published on 18 October 2016

Genome-Wide Study of Response to Platinum, Taxane, and Combination Therapy in Ovarian Cancer: In vitro Phenotypes, Inherited Variation, and Disease Recurrence

scientific article published on 22 March 2016

Genome-wide Analysis Identifies Novel Loci Associated with Ovarian Cancer Outcomes: Findings from the Ovarian Cancer Association Consortium

scientific article

Genome-wide Analysis of Common Copy Number Variation and Epithelial Ovarian Cancer Risk

scientific article published on 04 April 2019

Genome-wide association analyses of genetic, phenotypic, and environmental risks in the age-related eye disease study ⬇️

scientific article published on December 17, 2010

Genome-wide association analysis identified splicing single nucleotide polymorphism in CFLAR predictive of triptolide chemo-sensitivity

scientific article published on 30 June 2015

Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system

scientific article published on 30 August 2013

Genome-wide association study of glioma and meta-analysis

journal article published in 2012

Genome-wide association study of subtype-specific epithelial ovarian cancer risk alleles using pooled DNA.

scientific article published on 5 November 2013

Genome-wide gene-set analysis for identification of pathways associated with alcohol dependence.

scientific article published on 02 May 2012

Genome-wide investigation of regional blood-based DNA methylation adjusted for complete blood counts implicates BNC2 in ovarian cancer

scientific article

Genome-wide linkage analysis for uric acid in families enriched for hypertension

scientific article published on 03 March 2009

Genomic Analysis Using Regularized Regression in High-Grade Serous Ovarian Cancer

scientific article published in February 2018

Genomic association analysis suggests chromosome 12 locus influencing antihypertensive response to thiazide diuretic

scientific article published on 30 June 2008

Germline Mutations in the BRIP1, BARD1, PALB2, and NBN Genes in Women With Ovarian Cancer

scientific article published on 27 August 2015

Germline copy number variation and ovarian cancer survival

scientific article

Germline mutation in BRCA1 or BRCA2 and ten-year survival for women diagnosed with epithelial ovarian cancer

scientific article

Germline polymorphisms in an enhancer of PSIP1 are associated with progression-free survival in epithelial ovarian cancer

scientific article published on 31 January 2016

Germline whole exome sequencing and large-scale replication identifies FANCM as a likely high grade serous ovarian cancer susceptibility gene

scientific article published on 3 March 2017

HNF1B variants associate with promoter methylation and regulate gene networks activated in prostate and ovarian cancer

scientific article published on 09 October 2016

HOTAIR and its surrogate DNA methylation signature indicate carboplatin resistance in ovarian cancer

scientific article

Heterogeneous expression of cytokines accounts for clinical diversity and refines prognostication in CMML

scientific article published on 19 July 2018

Hormone-receptor expression and ovarian cancer survival: an Ovarian Tumor Tissue Analysis consortium study

scientific article

Host genetic variation contributes to phenotypic diversity in myeloproliferative disorders

scientific article published on 15 November 2007

Human liver methionine cycle: MAT1A and GNMT gene resequencing, functional genomics, and hepatic genotype-phenotype correlation

scientific article

Human phenylethanolamine N-methyltransferase genetic polymorphisms and exercise-induced epinephrine release

scientific article published on 18 March 2008

Identification and molecular characterization of a new ovarian cancer susceptibility locus at 17q21.31.

scientific article published on January 2013

Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer

scientific article

Identification of a novel percent mammographic density locus at 12q24.

scientific article

Identification of nine new susceptibility loci for endometrial cancer

scientific article published in Nature Communications

Identification of novel variants in colorectal cancer families by high-throughput exome sequencing

scientific article published on May 2013

Identification of six new susceptibility loci for invasive epithelial ovarian cancer

scientific article published on 12 January 2015

Identifying the genetic variation of gene expression using gene sets: application of novel gene Set eQTL approach to PharmGKB and KEGG.

scientific article

Implant-sparing Mastectomy: An Alternative for Women Undergoing Mastectomy With Retropectoral Implants

scientific article published on 03 September 2019

Imputation and subset-based association analysis across different cancer types identifies multiple independent risk loci in the TERT-CLPTM1L region on chromosome 5p15.33

journal article published in 2014

Imputation methods for missing data for polygenic models

scientific article

Individualizing care for ovarian cancer patients using big data

scientific article published on 03 April 2014

Inflammation-Related Gene Variants as Risk Factors for Pancreatic Cancer ⬇️

scientific article published on April 5, 2011

Inherited determinants of ovarian cancer survival

scientific article

Inherited variant on chromosome 11q23 increases susceptibility to IDH-mutated but not IDH-normal gliomas regardless of grade or histology

scientific article published on 29 January 2013

Inherited variants affecting RNA editing may contribute to ovarian cancer susceptibility: results from a large-scale collaboration

scientific article published on July 2016

Inherited variants in mitochondrial biogenesis genes may influence epithelial ovarian cancer risk

scientific article

Inherited variants in regulatory T cell genes and outcome of ovarian cancer

scientific article

Integrative clustering methods for high-dimensional molecular data

scientific article

Integrative clustering of multi-level 'omic data based on non-negative matrix factorization algorithm

scientific article

Integrative gene set analysis: application to platinum pharmacogenomics

scientific article

Integrative genomic analysis identifies epigenetic marks that mediate genetic risk for epithelial ovarian cancer

scientific article published on 30 January 2014

InterSIM: Simulation tool for multiple integrative 'omic datasets'.

scientific article published on 27 February 2016

Interacting alleles of the coinhibitory immunoreceptor genes cytotoxic T-lymphocyte antigen 4 and programmed cell-death 1 influence risk and features of primary biliary cirrhosis

scientific article

Intra-Gene DNA Methylation Variability Is a Clinically Independent Prognostic Marker in Women's Cancers

scientific article published on 2 December 2015

Investigation of Exomic Variants Associated with Overall Survival in Ovarian Cancer

scientific article

Kernel canonical correlation analysis for assessing gene-gene interactions and application to ovarian cancer

scientific article published on 17 April 2013

LIN28B polymorphisms influence susceptibility to epithelial ovarian cancer

scientific article published on 11 April 2011

Large-scale evaluation of common variation in regulatory T cell-related genes and ovarian cancer outcome

scientific article published on 27 January 2014

Lenalidomide-based response-adapted therapy for older adults without high risk myeloma

scientific article published on 12 December 2018

Linkage analysis using principal components of gene expression data.

scientific article

Localization of association signal from risk and protective variants in sequencing studies

scientific article

Localizing putative markers in genetic association studies by incorporating linkage disequilibrium into bayesian hierarchical models

scientific article

Mediation analysis of alcohol consumption, DNA methylation, and epithelial ovarian cancer

scientific article published on 10 January 2018

Mendelian randomization analyses suggest a role for cholesterol in the development of endometrial cancer

scientific article published on 13 July 2020

Merging pharmacometabolomics with pharmacogenomics using '1000 Genomes' single-nucleotide polymorphism imputation: selective serotonin reuptake inhibitor response pharmacogenomics

scientific article

Meta-analysis of 8q24 for seven cancers reveals a locus between NOV and ENPP2 associated with cancer development

scientific article

Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.

scientific article

Metformin pharmacogenomics: a genome-wide association study to identify genetic and epigenetic biomarkers involved in metformin anticancer response using human lymphoblastoid cell lines

scientific article

Methods for analysis in pharmacogenomics: lessons from the Pharmacogenetics Research Network Analysis Group

scientific article published on February 2009

Methylation of leukocyte DNA and ovarian cancer: relationships with disease status and outcome

scientific article

MicroRNA processing and binding site polymorphisms are not replicated in the Ovarian Cancer Association Consortium

scientific article published on 2 June 2011

Missing phenotype data imputation in pedigree data analysis

scientific article

Model selection and Bayesian methods in statistical genetics: summary of group 11 contributions to Genetic Analysis Workshop 15.

scientific article published on January 2007

Modulation of Breast Cancer Risk Biomarkers by High-Dose Omega-3 Fatty Acids: Phase II Pilot Study in Postmenopausal Women

scientific article

Modulation of Breast Cancer Risk Biomarkers by High-Dose Omega-3 Fatty Acids: Phase II Pilot Study in Premenopausal Women

scientific article published on 01 October 2015

Molecular classification of high grade endometrioid and clear cell ovarian cancer using TCGA gene expression signatures

scientific article published on April 2016

Molecular signatures of X chromosome inactivation and associations with clinical outcomes in epithelial ovarian cancer

scientific article published on 01 April 2019

Multiple independent variants at the TERT locus are associated with telomere length and risks of breast and ovarian cancer

scientific article published on April 2013

Multivariate models to detect genomic signatures for a class of drugs: application to thiopurines pharmacogenomics

scientific article

Mycophenolic acid response biomarkers: A cell line model system-based genome-wide screen ⬇️

scientific article published on March 23, 2011

Network-Based Integration of GWAS and Gene Expression Identifies a HOX-Centric Network Associated with Serous Ovarian Cancer Risk

scientific article

Network-based integrative clustering of multiple types of genomic data using non-negative matrix factorization

scientific article published on 23 January 2020

No association between a candidate TCF7L2 variant and risk of breast or ovarian cancer

scientific article

No clinical utility of KRAS variant rs61764370 for ovarian or breast cancer.

scientific article published in May 2015

Nonlinear mixed-effects models for modeling in vitro drug response data to determine problematic cancer cell lines

scientific article published on 08 October 2019

Obesity and risk of ovarian cancer subtypes: evidence from the Ovarian Cancer Association Consortium

scientific article published on 22 March 2013

Obesity and survival among women with ovarian cancer: results from the Ovarian Cancer Association Consortium

scientific article

Ontogeny Related Changes in the Pediatric Liver Metabolome

scientific article published on 29 September 2020

Ontogeny-related pharmacogene changes in the pediatric liver transcriptome

scientific article

Outcomes of selective whole breast irradiation following lumpectomy with intraoperative radiation therapy for hormone receptor positive breast cancer

scientific article published on 17 July 2019

Ovarian cancer risk associated with inherited inflammation-related variants

scientific article published on 26 January 2012

PALB2, CHEK2 and ATM rare variants and cancer risk: data from COGS

scientific article published in December 2016

PPM1D Mosaic Truncating Variants in Ovarian Cancer Cases May Be Treatment-Related Somatic Mutations

scientific article published on 27 January 2016

Participation bias and its impact on the assembly of a genetic specimen repository for a myocardial infarction cohort

scientific article published on October 2007

Patterns and predictors of genetic referral among ovarian cancer patients at a National Cancer Institute-Comprehensive Cancer Center

scientific article published on 24 November 2019

Phase II trial of gemcitabine and nab-paclitaxel in patients with recurrent Ewing sarcoma: A report from the National Pediatric Cancer Foundation

scientific article published on 09 May 2020

Platinum sensitivity-related germline polymorphism discovered via a cell-based approach and analysis of its association with outcome in ovarian cancer patients

scientific article

Polymorphism in the GALNT1 gene and epithelial ovarian cancer in non-Hispanic white women: the Ovarian Cancer Association Consortium

scientific article

Polymorphisms in ABCB1 and ERCC2 associated with ovarian cancer outcome ⬇️

scientific article published on May 2, 2011

Polymorphisms in NF-kappaB inhibitors and risk of epithelial ovarian cancer

scientific article

Polymorphisms in TCEAL7 and risk of epithelial ovarian cancer

scientific article published on 05 May 2009

Polymorphisms in stromal genes and susceptibility to serous epithelial ovarian cancer: a report from the Ovarian Cancer Association Consortium

scientific article published on 27 May 2011

Predictors of survival trajectories among women with epithelial ovarian cancer

scientific article published on 12 December 2019

Primary biliary cirrhosis is associated with a genetic variant in the 3' flanking region of the CTLA4 gene

scientific article published on July 2008

Prior oral contraceptive use in ovarian cancer patients: assessing associations with overall and progression-free survival

scientific article published on 15 October 2015

Progesterone receptor gene polymorphisms and risk of endometriosis: results from an international collaborative effort

scientific article

Prospective CYP2C19-Guided Voriconazole Prophylaxis in Patients With Neutropenic Acute Myeloid Leukemia Reduces the Incidence of Subtherapeutic Antifungal Plasma Concentrations

scientific article published on 01 November 2019

Prostate cancer susceptibility polymorphism rs2660753 is not associated with invasive ovarian cancer

scientific article

Proteasome beta subunit pharmacogenomics: gene resequencing and functional genomics

scientific article published on June 2008

PurBayes: estimating tumor cellularity and subclonality in next-generation sequencing data ⬇️

scientific article published on June 6, 2013

Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines

scientific article

Recreational physical inactivity and mortality in women with invasive epithelial ovarian cancer: evidence from the Ovarian Cancer Association Consortium

scientific article

Regular Multivitamin Supplement Use, Single Nucleotide Polymorphisms in ATIC, SHMT2, and SLC46A1, and Risk of Ovarian Carcinoma

scientific article published on 19 March 2012

Reproducibility of Genotypes as Measured by the Affymetrix GeneChip® 100K Human Mapping Array Set.

scientific article published on August 2008

Risk Prediction for Epithelial Ovarian Cancer in 11 United States-Based Case-Control Studies: Incorporation of Epidemiologic Risk Factors and 17 Confirmed Genetic Loci

scientific article

Risk of ovarian cancer and inherited variants in relapse-associated genes

scientific article

Risk of ovarian cancer and the NF-κB pathway: genetic association with IL1A and TNFSF10

scientific article published on 22 November 2013

Robust Tests for Additive Gene-Environment Interaction in Case-Control Studies Using Gene-Environment Independence

scientific article published on 14 June 2017

Robust gene expression and mutation analyses of RNA-sequencing of formalin-fixed diagnostic tumor samples.

scientific article published on 23 July 2015

SSBP2 variants are associated with survival in glioblastoma patients

scientific journal article

Self-Contained Gene-Set Analysis of Expression Data: An Evaluation of Existing and Novel Methods ⬇️

scientific article published on September 17, 2010

Serine hydroxymethyltransferase 1 and 2: gene sequence variation and functional genomic characterization ⬇️

scientific article published on February 6, 2012

Sestrin family of genes and their role in cancer-related fatigue

scientific article published on 12 March 2018

Shared genetics underlying epidemiological association between endometriosis and ovarian cancer

scientific article published on 30 July 2015

Simultaneous Analysis of Multiple Data Types in Pharmacogenomic Studies Using Weighted Sparse Canonical Correlation Analysis ⬇️

scientific article published on June 26, 2012

Single versus multiple imputation for genotypic data.

scientific article

Small molecule inhibition of lysine-specific demethylase 1 (LSD1) and histone deacetylase (HDAC) alone and in combination in Ewing sarcoma cell lines

scientific article published on 24 September 2019

Soft truncation thresholding for gene set analysis of RNA-seq data: application to a vaccine study

scientific article

Statistical and Bioinformatics Analysis of Data from Bulk and Single-Cell RNA Sequencing Experiments

scientific article published on 01 January 2021

Statistical genomics in rare cancer

scientific article published on 19 August 2019

Subject level clustering using a negative binomial model for small transcriptomic studies

scientific article published on 12 December 2018

Summarizing internal dynamics boosts differential analysis and functional interpretation of super enhancers ⬇️

scientific article published on 01 April 2022

Survival Is Associated With Genetic Variation in Inflammatory Pathway Genes Among Patients With Resected and Unresected Pancreatic Cancer ⬇️

scientific article published on June 1, 2013

TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression

scientific article published on 21 March 2013

The association between socioeconomic status and tumour stage at diagnosis of ovarian cancer: A pooled analysis of 18 case-control studies

scientific article published on 3 February 2016

The contribution of deleterious germline mutations in BRCA1, BRCA2 and the mismatch repair genes to ovarian cancer in the population

scientific article

The genetics of gene expression: comparison of linkage scans using two phenotype normalization methods

scientific article

The prevalence of luminal B subtype is higher in older postmenopausal women with ER+/HER2- breast cancer and is associated with inferior outcomes

scientific article published on 25 August 2020

The role of KRAS rs61764370 in invasive epithelial ovarian cancer: implications for clinical testing

scientific article published on 8 March 2011

Thiopurine pharmacogenomics: association of SNPs with clinical response and functional validation of candidate genes

scientific article

Toll-like Receptor Polymorphisms and Age-Related Macular Degeneration

Transcriptomic Characterization of Endometrioid, Clear Cell, and High-Grade Serous Epithelial Ovarian Carcinoma

scientific article published on 02 July 2018

Tumor hypomethylation at 6p21.3 associates with longer time to recurrence of high-grade serous epithelial ovarian cancer

scientific article (publication date: June 2014)

Use of the gamma method for self-contained gene-set analysis of SNP data ⬇️

scientific article published on December 14, 2011

Utility of Taking Additional Margins When Performing Breast-Conserving Surgery with Intraoperative Radiation Therapy for Early Breast Cancer

scientific article published on 21 July 2020

Utilizing genotype imputation for the augmentation of sequence data

scientific article

Variants in genes encoding small GTPases and association with epithelial ovarian cancer susceptibility

scientific article published in PLoS ONE

Variation at 8q24 and 9p24 and risk of epithelial ovarian cancer

scientific article

Variation in NF-κB signaling pathways and survival in invasive epithelial ovarian cancer

scientific article published on 16 April 2014

Xenobiotic-Metabolizing gene polymorphisms and ovarian cancer risk

scientific article

rs495139 in the TYMS-ENOSF1 Region and Risk of Ovarian Carcinoma of Mucinous Histology

scientific article published on 21 August 2018

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