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List of works by Henry T Nguyen

A Bayesian model for detection of high-order interactions among genetic variants in genome-wide association studies

scientific article published on 25 November 2015

A Simple Analytical Method for High-Throughput Screening of Major Sugars from Soybean by Normal-Phase HPLC with Evaporative Light Scattering Detection

A Sweetpotato Geranylgeranyl Pyrophosphate Synthase Gene, IbGGPS, Increases Carotenoid Content and Enhances Osmotic Stress Tolerance in Arabidopsis thaliana

scientific article published on 16 September 2015

A major natural genetic variation associated with root system architecture and plasticity improves waterlogging tolerance and yield in soybean

scientific article published on 8 March 2018

A plant-transformation-competent BIBAC/BAC-based map of rice for functional analysis and genetic engineering of its genomic sequence

scientific article

A reference-grade wild soybean genome

scientific article published on 14 March 2019

A seed change in our understanding of legume biology from genomics to the efficient cooperation between nodulation and arbuscular mycorrhizal fungi

scientific article published on 01 September 2018

Accelerating genetic gains in legumes for the development of prosperous smallholder agriculture: integrating genomics, phenotyping, systems modelling and agronomy

scientific article published on 5 March 2018

Adapting legume crops to climate change using genomic approaches.

scientific article published on 30 March 2018

Advancements in breeding, genetics, and genomics for resistance to three nematode species in soybean

scientific article published on 28 October 2016

An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes.

scientific article published on 2 December 2014

Analysis of Whole Transcriptome RNA-seq Data Reveals Many Alternative Splicing Events in Soybean Roots under Drought Stress Conditions

scientific article published on 19 December 2020

Application of genomics-assisted breeding for generation of climate resilient crops: progress and prospects

scientific article (publication date: 2015)

Assessment of Phenotypic Variations and Correlation among Seed Composition Traits in Mutagenized Soybean Populations

scientific article published on 27 November 2019

Author Correction: A chickpea genetic variation map based on the sequencing of 3,366 genomes

scientific article published in 2022

Avenues of the membrane transport system in adaptation of plants to abiotic stresses

scientific article published on 30 July 2019

Biological Mechanisms that Influence Soy Protein Concentration and Composition

article

Cell wall proteome in the maize primary root elongation zone. II. Region-specific changes in water soluble and lightly ionically bound proteins under water deficit

scientific article published on 19 October 2007

Characterization of Root System Architecture Traits in Diverse Soybean Genotypes Using a Semi-Hydroponic System

scientific article

Characterization of Select Wild Soybean Accessions in the USDA Germplasm Collection for Seed Composition and Agronomic Traits

scholarly article

Characterization of the Gene Family: New Insight to the Roles in Soybean Flooding Tolerance

article

Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement

scientific article published on 03 November 2021

Cloning, functional expression and phylogenetic analysis of plant sterol 24C-methyltransferases involved in sitosterol biosynthesis

scientific article published on 8 October 2009

Comparative analysis of endogenous hormones level in two soybean (Glycine max L.) lines differing in waterlogging tolerance

scientific article

Comparative analysis of the drought-responsive transcriptome in soybean lines contrasting for canopy wilting

scientific article

Comparative genome analysis to identify SNPs associated with high oleic acid and elevated protein content in soybean

scientific article published on 24 January 2018

Comprehensive Analysis of the Soybean (Glycine max) GmLAX Auxin Transporter Gene Family

scientific article published on 9 March 2016

Construction and comparison of three reference-quality genome assemblies for soybean

scientific article published on 28 October 2019

Core clock, SUB1, and ABAR genes mediate flooding and drought responses via alternative splicing in soybean

scientific article

Correction: Evaluation of Candidate Reference Genes for Normalization of Quantitative RT-PCR in Soybean Tissues under Various Abiotic Stress Conditions

scientific article published in PLoS ONE

Developing a high‐throughput method to screen soybean germplasm for hypoxia tolerance in a hydroponic system

Development of SNP Genotyping Assays for Seed Composition Traits in Soybean

scientific article published on 25 May 2017

Differential expression of isoflavone biosynthetic genes in soybean during water deficits.

scientific article published on 29 April 2010

Direct Infusion Metabolomics of the Photosystem and Chlorophyll Related Metabolites within a Drought Tolerant Plant Introduction of Glycine max

scientific article published in 2021

Dissecting genomic hotspots underlying seed protein, oil, and sucrose content in an interspecific mapping population of soybean using high-density linkage mapping

scientific article published on 16 May 2018

Drought Stress Causes a Reduction in the Biosynthesis of Ascorbic Acid in Soybean Plants.

scientific article

Editorial: Aquaporins: Dynamic Role and Regulation.

scientific article published on 15 August 2017

Epigenetics and epigenomics: underlying mechanisms, relevance, and implications in crop improvement

scientific article published on 21 October 2020

Erratum: Genome sequence of the palaeopolyploid soybean

scientific article published in Nature

Establishment of a soybean (Glycine max Merr. L) transposon-based mutagenesis repository

scientific article

Evaluation of candidate reference genes for normalization of quantitative RT-PCR in soybean tissues under various abiotic stress conditions

scientific article

Evaluation of genetic variation among Brazilian soybean cultivars through genome resequencing.

scientific article published on 13 February 2016

Evaluation of high yielding soybean germplasm under water limitation

scientific article

Expanding Omics Resources for Improvement of Soybean Seed Composition Traits

scientific article

Expression of root-related transcription factors associated with flooding tolerance of soybean (Glycine max)

scientific article

Expression profiling of rice segregating for drought tolerance QTLs using a rice genome array

scientific article published on 12 October 2004

Functional analysis of water stress-responsive soybean GmNAC003 and GmNAC004 transcription factors in lateral root development in arabidopsis ⬇️

scientific article published on 23 January 2014

Generation of Phaseolus vulgaris ESTs and investigation of their regulation upon Uromyces appendiculatus infection

scientific article

Genetic Diversity of Root System Architecture in Response to Drought Stress in Grain Legumes

scientific article published on 7 March 2018

Genetic Mapping and Confirmation of Quantitative Trait Loci for Seed Protein and Oil Contents and Seed Weight in Soybean

Genetic control of soybean seed isoflavone content: importance of statistical model and epistasis in complex traits.

scientific article published on 23 July 2009

Genetic diversity and genomic strategies for improving drought and waterlogging tolerance in soybeans.

scientific article published on 7 December 2016

Genetic mapping and haplotype analysis of a locus for quantitative resistance to Fusarium graminearum in soybean accession PI 567516C.

scientific article

Genetic marker anchoring by six-dimensional pools for development of a soybean physical map

scientific article

Genetic variants in root architecture-related genes in a Glycine soja accession, a potential resource to improve cultivated soybean

scientific article

Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing

publication published on 08 February 2021

Genome reorganization of the GmSHMT gene family in soybean showed a lack of functional redundancy in resistance to soybean cyst nematode

scientific article published in Scientific Reports

Genome sequence of the palaeopolyploid soybean

scientific article

Genome-Wide Identification and Analysis of the Hsp40/J-Protein Family Reveals Its Role in Soybean (Glycine max) Growth and Development

scientific article published in 2023

Genome-wide analysis and expression profiling of the PIN auxin transporter gene family in soybean (Glycine max)

scientific article published on 16 November 2015

Genome-wide expression analysis of soybean NF-Y genes reveals potential function in development and drought response

scientific article published on 27 December 2014

Genome-wide transcriptional profiling for elucidating the effects of brassinosteroids on Glycine max during early vegetative development

scientific article published on 06 November 2019

Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

scientific article published on 15 January 2016

Genomic differences between cultivated soybean, G. max and its wild relative G. soja

scientific article

Genomic resources in plant breeding for sustainable agriculture

scientific article published on 17 December 2020

Genomic-assisted haplotype analysis and the development of high-throughput SNP markers for salinity tolerance in soybean

scientific article published on 19 January 2016

Genomic-assisted phylogenetic analysis and marker development for next generation soybean cyst nematode resistance breeding

scientific article published on 28 August 2015

Genomics Approaches To Soybean Improvement

Genotyping-by-sequencing based intra-specific genetic map refines a ''QTL-hotspot" region for drought tolerance in chickpea

scientific article published on 25 October 2014

Global agricultural intensification during climate change: a role for genomics

scientific article published in April 2016

GmBZL3 acts as a major BR signaling regulator through crosstalk with multiple pathways in Glycine max

scientific article published on 22 February 2019

Haplotype mapping uncovers unexplored variation in wild and domesticated soybean at the major protein locus cqProt-003

scientific article published on 09 February 2022

Higher plant cytochrome b5 polypeptides modulate fatty acid desaturation

scientific article (publication date: 2012)

Homolog-specific PCR primer design for profiling splice variants ⬇️

scientific article published on March 16, 2011

Identification and Comparative Analysis of Differential Gene Expression in Soybean Leaf Tissue under Drought and Flooding Stress Revealed by RNA-Seq

scientific article published on 19 July 2016

Identification and characterization of a stachyose synthase gene controlling reduced stachyose content in soybean

scientific article

Identification and evaluation of quantitative trait loci underlying resistance to multiple HG types of soybean cyst nematode in soybean PI 437655

scientific article

Identification of new loci for salt tolerance in soybean by high-resolution genome-wide association mapping

scientific article published on 25 April 2019

Identification of novel QTL governing root architectural traits in an interspecific soybean population

scientific article published on 10 March 2015

Identification of quantitative trait loci controlling linolenic acid concentration in PI483463 (Glycine soja)

scientific article published on 04 May 2014

Identification of quantitative trait loci underlying resistance to southern root-knot and reniform nematodes in soybean accession PI 567516C

scientific article published on 23 May 2015

Impacts of genomic research on soybean improvement in East Asia

scientific article published on 23 October 2019

Inheritance of salt tolerance in wild soybean (Glycine soja Sieb. and Zucc.) accession PI483463.

scientific article

Integrating omic approaches for abiotic stress tolerance in soybean

scientific article

Intricate environment-modulated genetic networks control isoflavone accumulation in soybean seeds

scientific article

Landscape of genomic diversity and trait discovery in soybean

scientific article published on 31 March 2016

Large-scale analysis of putative soybean regulatory gene expression identifies a Myb gene involved in soybean nodule development

scientific article published on 15 September 2009

Legume Genomics: From Genomic Resources to Molecular Breeding

scientific article published in 2013

Legumes-The art and science of environmentally sustainable agriculture ⬇️

scientific article published on 01 January 2019

Machine learning models outperform deep learning models, provide interpretation and facilitate feature selection for soybean trait prediction

scientific article published on 08 April 2022

Major locus and other novel additive and epistatic loci involved in modulation of isoflavone concentration in soybean seeds

scientific article published on 18 August 2011

Mapping Quantitative Trait Loci for Soybean Seedling Shoot and Root Architecture Traits in an Inter-Specific Genetic Population

scientific article published on 19 August 2020

Mapping and confirmation of loci for salt tolerance in a novel soybean germplasm, Fiskeby III.

scientific article published on 18 November 2017

Metabolic engineering of soybean affords improved phytosterol seed traits

article

Modelling predicts that soybean is poised to dominate crop production across Africa ⬇️

scientific article published in 2018

Molecular Characterization of Resistance to Soybean Rust (Phakopsora pachyrhizi Syd. & Syd.) in Soybean Cultivar DT 2000 (PI 635999).

scientific article

Molecular characterization and functional analysis of Glycine max sterol methyl transferase 2 genes involved in plant membrane sterol biosynthesis

scientific article published on 24 September 2010

Molecular characterization of Glycine max squalene synthase genes in seed phytosterol biosynthesis

scientific article

Molecular characterization of stress-inducible GmNAC genes in soybean

scientific article published on 11 March 2009

Molecular evolution of lysin motif-type receptor-like kinases in plants

scientific article published on 20 April 2007

Molecular mapping and genomics of soybean seed protein: a review and perspective for the future

scientific article published on 11 August 2017

Neglecting legumes has compromised human health and sustainable food production ⬇️

scientific article

Novel quantitative trait loci for broad-based resistance to soybean cyst nematode (Heterodera glycines Ichinohe) in soybean PI 567516C

scientific article published on 18 June 2010

Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean

scientific article published on 6 September 2014

PGen: large-scale genomic variations analysis workflow and browser in SoyKB.

scientific article

Physiological and molecular approaches to improve drought resistance in soybean

scientific article published on 22 June 2009

Pinpointing genes underlying the quantitative trait loci for root-knot nematode resistance in palaeopolyploid soybean by whole genome resequencing

scientific article published on 29 July 2013

Prediction of Soybean Root Response in the Field Using Nondestructive Seedling Three‐Dimensional Root Features

scholarly article

Prioritization of candidate genes in "QTL-hotspot" region for drought tolerance in chickpea (Cicer arietinum L.).

scientific article published on 19 October 2015

Prospects for developing allergen‐depleted food crops

scientific article published in 2023

QTL, additive and epistatic effects for SCN resistance in PI 437654

scientific article published on 01 February 2009

Qualification of Soybean Responses to Flooding Stress Using UAV-Based Imagery and Deep Learning

scientific article published on 28 June 2021

Quantitative phosphoproteomic analysis of soybean root hairs inoculated with Bradyrhizobium japonicum

scientific article

RNAi-mediated disruption of squalene synthase improves drought tolerance and yield in rice ⬇️

scientific article published on September 16, 2011

Regulation of growth response to water stress in the soybean primary root. I. Proteomic analysis reveals region-specific regulation of phenylpropanoid metabolism and control of free iron in the elongation zone

scientific article

Reproductive success of soybean (Glycine max L. Merril) cultivars and exotic lines under high daytime temperature

scientific article published on 27 September 2018

Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits

scientific article published on 29 April 2019

Root growth maintenance during water deficits: physiology to functional genomics

scientific article published on 24 September 2004

Root xylem plasticity to improve water use and yield in water-stressed soybean

scientific article

SNP discovery by high-throughput sequencing in soybean

scientific article

Screening of Soybean Genotypes Based on Root Morphology and Shoot Traits Using the Semi-Hydroponic Phenotyping Platform and Rhizobox Technique

Selection of a core set of RILs from Forrest × Williams 82 to develop a framework map in soybean ⬇️

scientific article published on January 19, 2011

Silencing of GmFAD3 gene by siRNA leads to low alpha-linolenic acids (18:3) of fad3-mutant phenotype in soybean [Glycine max (Merr.)].

scientific article published on 7 February 2008

Single feature polymorphism discovery in rice

scientific article

Small RNA profiles in soybean primary root tips under water deficit

scientific article (publication date: 5 December 2016)

SoyDB: a knowledge database of soybean transcription factors

scientific article

SoyMetDB: The soybean metabolome database

Soybean (Glycine max) Haplotype Map (GmHapMap): A Universal Resource for Soybean Translational and Functional Genomics

scientific article published on 13 August 2020

Soybean (Glycine max) SWEET gene family: insights through comparative genomics, transcriptome profiling and whole genome re-sequence analysis

scientific article published on 11 July 2015

Soybean Knowledge Base (SoyKB): a web resource for soybean translational genomics

scientific article

Soybean TIP Gene Family Analysis and Characterization of GmTIP1;5 and GmTIP2;5 Water Transport Activity

scientific article published on 21 October 2016

Soybean Transporter Database (SoyTD): A comprehensive database for identification and exploration of natural variants in soybean transporter genes

scientific article published on 24 November 2020

Soybean knowledge base (SoyKB): a web resource for integration of soybean translational genomics and molecular breeding

scientific article (publication date: 2014)

Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance

scientific article published on 13 August 2015

Spatial distribution of transcript changes in the maize primary root elongation zone at low water potential

scientific article

Survey sequencing of soybean elucidates the genome structure, composition and identifies novel repeats

scientific article published on 01 August 2006

The importance of slow canopy wilting in drought tolerance in soybean

scientific article published on 01 January 2020

Trait associations in the pangenome of pigeon pea (Cajanus cajan)

scientific article published on 05 February 2020

Two MATE proteins play a role in iron efficiency in soybean

scientific article

Understanding abiotic stress tolerance mechanisms in soybean: a comparative evaluation of soybean response to drought and flooding stress

scientific article published on 20 November 2014

Understanding genetic control of root system architecture in soybean: Insights into the genetic basis of lateral root number

scientific article published on 15 June 2018

Understanding regulatory networks and engineering for enhanced drought tolerance in plants

scientific article

Whole-genome gene expression profiling revealed genes and pathways potentially involved in regulating interactions of soybean with cyst nematode (Heterodera glycines Ichinohe).

scientific article

Whole-genome re-sequencing reveals the impact of the interaction of copy number variants of the rhg1 and Rhg4 genes on broad-based resistance to soybean cyst nematode

scientific article published on 20 February 2019

Whole-genome resequencing identifies quantitative trait loci associated with mycorrhizal colonization of soybean

scientific article published on 09 November 2019

Wild grass‐derived alleles represent a genetic architecture for the resilience of modern common wheat to stresses

scientific article published in 2024

Wildsoydb DataHub: a platform for accessing soybean multiomic datasets across multiple reference genomes

scientific article published in 2022

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