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List of works by Tamás Korcsmáros

A systems genomics approach to uncover patient-specific pathogenic pathways and proteins in ulcerative colitis

scientific article published on 28 April 2022

Antibiotic-induced disturbances of the gut microbiota result in accelerated breast tumor growth

scientific article published on 20 August 2021

Benchmark of Data Processing Methods and Machine Learning Models for Gut Microbiome-Based Diagnosis of Inflammatory Bowel Disease

scientific article published on 14 February 2022

Bifidobacterium breve UCC2003 Exopolysaccharide Modulates the Early Life Microbiota by Acting as a Potential Dietary Substrate

scientific article published on 29 March 2020

Bifidobacterium breve UCC2003 Induces a Distinct Global Transcriptomic Program in Neonatal Murine Intestinal Epithelial Cells

scientific article published on 02 July 2020

Big data in IBD: big progress for clinical practice

scientific article published on 28 February 2020

COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms

COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms ⬇️

journal article from 'Molecular Systems Biology' published in 2021

CausalTab: PSI-MITAB 2.8 updated format for signaling data representation and dissemination

scientific article published on 6 August 2018

ComPPI: a cellular compartment-specific database for protein-protein interaction network analysis.

scientific article published on 27 October 2014

Confrontation of fibroblasts with cancer cells in vitro: gene network analysis of transcriptome changes and differential capacity to inhibit tumor growth

scientific article published on 18 June 2015

Democratising Knowledge Representation with BioCypher

scientific article published on 27 December 2022

Democratizing knowledge representation with BioCypher

Developmentally regulated autophagy is required for eye formation in Drosophila

scientific article published on 09 August 2018

Discovering cooperative biomarkers for heterogeneous complex disease diagnoses.

scientific article published on 8 August 2017

Evolution of regulatory networks associated with traits under selection in cichlids

scientific article published on 08 January 2021

From bag-of-genes to bag-of-genomes: metabolic modelling of communities in the era of metagenome-assembled genomes

scientific article published on 25 June 2020

Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)

article by Daniel J Klionsky et al published January 2021 in Autophagy

Identification of critical paralog groups with indispensable roles in the regulation of signaling flow

scientific article published on 06 December 2016

Integrated intra‐ and intercellular signaling knowledge for multicellular omics analysis

scientific article published on 22 March 2021

Integrative analysis of Paneth cell proteomic and transcriptomic data from intestinal organoids reveals functional processes dependent on autophagy

scientific article published on 18 March 2019

LC3-Associated Phagocytosis Is Required for Dendritic Cell Inflammatory Cytokine Response to Gut Commensal Yeast Saccharomyces cerevisiae.

scientific article published on 25 October 2017

MDH1 and MPP7 Regulate Autophagy in Pancreatic Ductal Adenocarcinoma

scientific article published on 14 February 2019

Mapping the epithelial-immune cell interactome upon infection in the gut and the upper airways

scientific article published on 02 May 2022

Mechanisms and pathways of Toxoplasma gondii transepithelial migration

scientific article published on 20 December 2016

MicrobioLink: An Integrated Computational Pipeline to Infer Functional Effects of Microbiome-Host Interactions

scientific article published on 21 May 2020

MicrobioLink: An integrated computational pipeline to infer functional effects of microbiome-host interactions

scientific article published on 10 November 2019

Network Biology Approaches to Identify Molecular and Systems-Level Differences Between Salmonella Pathovars

scientific article published on 01 January 2019

Next generation of network medicine: interdisciplinary signaling approaches

scientific article published on 20 January 2017

Omics Approaches to Identify Potential Biomarkers of Inflammatory Diseases in the Focal Adhesion Complex

scientific article

Organoid-based models to study the role of host-microbiota interactions in IBD

scientific article published on 20 December 2020

SARS-CoV-2 Causes a Different Cytokine Response Compared to Other Cytokine Storm-Causing Respiratory Viruses in Severely Ill Patients

scholarly article by Marton Olbei et al published 2021 in Frontiers in Immunology

SalmoNet, an integrated network of ten Salmonella enterica strains reveals common and distinct pathways to host adaptation

scientific article

Sherlock: an open-source data platform to store, analyze and integrate Big Data for biology

scientific article published on 21 May 2021

SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks

scientific article published on 01 January 2022

Signalogs: Orthology-Based Identification of Novel Signaling Pathway Components in Three Metazoans ⬇️

scientific article published on May 3, 2011

Staurosporine induces necroptotic cell death under caspase-compromised conditions in U937 cells

scientific article

Suppression of AMPK/aak-2 by NRF2/SKN-1 down-regulates autophagy during prolonged oxidative stress

scientific article published on 2 October 2018

Systems-Level Feedbacks of NRF2 Controlling Autophagy upon Oxidative Stress Response

scientific article published on 5 March 2018

Targeted interplay between bacterial pathogens and host autophagy

scientific article published on 25 March 2019

Teaching the bioinformatics of signaling networks: an integrated approach to facilitate multi-disciplinary learning

scientific article published on 2 May 2013

ULK1 and ULK2 are less redundant than previously thought: computational analysis uncovers distinct regulation and functions of these autophagy induction proteins

scientific article published on 02 July 2020

ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways

scientific article published on 03 February 2021

What We Learned From Big Data for Autophagy Research

scientific article published on 17 August 2018

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