List of works - Paweł Mackiewicz

A fragment of chloroplast DNA was transferred horizontally, probably from non-eudicots, to mitochondrial genome of Phaseolus.

scientific article

A new parrot taxon from the Yucatán Peninsula, Mexico-its position within genus Amazona based on morphology and molecular phylogeny ⬇️

scientific article

AUG as the Translation Start Codon in Circular RNA Molecules: A Connection between Protein-Coding Genes and Transfer RNAs?

scientific article published on 27 April 2020

Amyloidogenic motifs revealed by n-gram analysis

scientific article published on 11 October 2017

Analysis of the targeting sequences of an iron-containing superoxide dismutase (SOD) of the dinoflagellate Lingulodinium polyedrum suggests function in multiple cellular compartments

scientific article

Ancient DNA and dating of cave bear remains from Niedźwiedzia Cave suggest early appearance of Ursus ingressus in Sudetes

article by Mateusz Baca et al published August 2014 in Quaternary International

Basic principles of the genetic code extension

scientific article published on 05 February 2020

Benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data

scientific article published in 2022

Chromalveolate plastids: direct descent or multiple endosymbioses?

scientific article published on 04 February 2009

Complete mitochondrial genome of Blue-and-yellow Macaw (Ara ararauna): the species morphologically similar to Blue-throated Macaw (Ara glaucogularis).

scientific article published on 29 December 2015

Complete mitochondrial genome of Blue-winged Macaw (Primolius maracana).

scientific article published on 29 December 2015

Complete mitochondrial genome of Mitred Conure (Psittacara mitratus): its comparison with mitogenome of Socorro Conure (Psittacara brevipes).

scientific article published on 23 February 2015

Complete mitochondrial genome of Red-throated Conure (Psittacara rubritorquis): its comparison with mitogenome of Socorro Conure (Psittacara brevipes).

scientific article published on 23 February 2015

Copy number of bean mitochondrial genes estimated by real-time PCR does not correlate with the number of gene loci and transcript levels.

scientific article

Correction: A new parrot taxon from the Yucatán Peninsula, Mexico-its position within genus Amazona based on morphology and molecular phylogeny.

scientific article published on 12 September 2017

Correction: Optimization of the standard genetic code according to three codon positions using an evolutionary algorithm

scientific article published in PLoS ONE

Cymbomonas tetramitiformis - a peculiar prasinophyte with a taste for bacteria sheds light on plastid evolution

scientific article published on 10 November 2016

Deficiency of mitoribosomal S10 protein affects translation and splicing in Arabidopsis mitochondria

scientific article published on 01 December 2019

DiaA/HobA and DnaA: a pair of proteins co-evolved to cooperate during bacterial orisome assembly

scientific article published on 25 February 2011

Did trypanosomatid parasites contain a eukaryotic alga-derived plastid in their evolutionary past?

scientific article

Direct and inverted repeats elicit genetic instability by both exploiting and eluding DNA double-strand break repair systems in mycobacteria

scientific article

Early steps in plastid evolution: current ideas and controversies

scientific article

Electromagnetic Field Seems to Not Influence Transcription via CTCT Motif in Three Plant Promoters.

scientific article published on 07 March 2017

Estimating the extinction time of two cave bears, Ursus spelaeus and U. ingressus ⬇️

article

Evidence for Horizontal Gene Transfer from Bacteroidetes Bacteria to Dinoflagellate Minicircles ⬇️

scientific article published on November 10, 2011

Evolutionary history and phylogeographic relationships of shrews from Sorex araneus group

scientific article

First ancient DNA sequences of the Late Pleistocene red deer (Cervus elaphus) from the Crimea, Ukraine

scholarly article

High divergence rate of sequences located on different DNA strands in closely related bacterial genomes

article

Higher mutation rate helps to rescue genes from the elimination by selection

article

How many protein-coding genes are there in theSaccharomyces cerevisiae genome?

article

How protein targeting to primary plastids via the endomembrane system could have evolved? A new hypothesis based on phylogenetic studies

scientific article

Impact of climatic changes in the Late Pleistocene on migrations and extinctions of mammals in Europe: four case studies

Innate immune properties of selected human neuropeptides against Moraxella catarrhalis and nontypeable Haemophilus influenzae

scientific article

Isolation and characterisation of KP34--a novel φKMV-like bacteriophage for Klebsiella pneumoniae

scientific article

Many alternative and theoretical genetic codes are more robust to amino acid replacements than the standard genetic code

scientific article published on 21 December 2018

Methods for comparing multiple digital PCR experiments

scientific article published on 10 August 2016

Monophyly of Archaeplastida supergroup and relationships among its lineages in the light of phylogenetic and phylogenomic studies. Are we close to a consensus?

scholarly article by Paweł Mackiewicz & Przemysław Gagat published 2014 in Acta Societatis Botanicorum Poloniae

Morphology, phylogeny, and molecular dating in Plagiogrammaceae family focused on Plagiogramma-Dimeregramma complex (Urneidophycidae, Bacillariophyceae)

scientific article published on 31 March 2020

New insight into parrots' mitogenomes indicates that their ancestor contained a duplicated region

scientific article published on 01 December 2018

New view on the organization and evolution of Palaeognathae mitogenomes poses the question on the ancestral gene rearrangement in Aves

scientific article published on 07 December 2020

Ongoing Speciation and Gene Flow between Taxonomically Challenging Trochulus Species Complex (Gastropoda: Hygromiidae).

scientific article

Optimization of Mutation Pressure in Relation to Properties of Protein-Coding Sequences in Bacterial Genomes

scientific article published on 29 June 2015

Optimization of amino acid replacement costs by mutational pressure in bacterial genomes

scientific article

Optimization of the standard genetic code according to three codon positions using an evolutionary algorithm

scientific article published in PLoS ONE

Optimization of the standard genetic code in terms of two mutation types: Point mutations and frameshifts

scientific article published on 28 April 2019

Organelle Evolution: Paulinella Breaks a Paradigm

scientific article published on 07 May 2012

ParA and ParB coordinate chromosome segregation with cell elongation and division during Streptomyces sporulation.

scientific article

Phenotypic plasticity can explain evolution of sympatric polymorphism in the hairy snail Trochulus hispidus (Linnaeus, 1758).

scientific article published on 24 July 2016

PhyMet2 : a database and toolkit for phylogenetic and metabolic analyses of methanogens.

scientific article published on 6 April 2018

Phylogenetic background, virulence gene profiles, and genomic diversity in commensal Escherichia coli isolated from ten mammal species living in one zoo.

scientific article

Phylogeny and evolution of Rab7 and Rab9 proteins

scientific article

Phylogeny of Amazona barbadensis and the Yellow-headed Amazon complex (Aves: Psittacidae): a new look at South American parrot evolution

scientific article (publication date: 2014)

Possible import routes of proteins into the cyanobacterial endosymbionts/plastids of Paulinella chromatophora

scientific article (publication date: May 2012)

Prediction of Signal Peptides in Proteins from Malaria Parasites

scholarly article by Michał Burdukiewicz et al published 22 November 2018 in International Journal of Molecular Sciences

Prevotella intermedia produces two proteins homologous to Porphyromonas gingivalis HmuY but with different heme coordination mode

scientific article published on 01 January 2020

Protein import into the photosynthetic organelles of Paulinella chromatophora and its implications for primary plastid endosymbiosis

scientific article

Quaternary skulls of the saiga antelope from Eastern Europe and Siberia: Saiga borealis versus Saiga tatarica – One species or two?

scholarly article

Rearrangements between differently replicating DNA strands in asymmetric bacterial genomes.

scientific article published in January 2003

Replication associated mutational pressure generating long-range correlation in DNA

Representation of mutation pressure and selection pressure by PAM matrices

scientific article published on January 2004

Representations of Search Spaces in the Problem of Mutational Pressure Optimization According to Protein-Coding Sequences

scientific article published on 17 April 2017

Resolving Phylogenetic Relationships within Passeriformes Based on Mitochondrial Genes and Inferring the Evolution of Their Mitogenomes in Terms of Duplications

scientific article published on 01 October 2019

Simulation of gene evolution under directional mutational pressure

article

Speciation in sympatric species of land snails from the genus <i>Trochulus</i> (Gastropoda, Hygromiidae)

scientific article published in 2020

Streptomyces sudanensis sp. nov., a new pathogen isolated from patients with actinomycetoma.

scientific article

Temporal variation in climatic factors influences phenotypic diversity of Trochulus land snails

scientific article published in 2022

Tfo belongs to HmuY-like family of proteins but differs in heme-binding properties

scholarly article by Marcin Bielecki published in October 2018

The Impact of Selection at the Amino Acid Level on the Usage of Synonymous Codons.

scientific article published on 25 January 2017

The Influence of Climate on Shell Variation in Trochulus striolatus (C. Pfeiffer, 1828) (Gastropoda: Hygromiidae) and Its Implications for Subspecies Taxonomy

scientific article

The Photosynthetic Adventure of Paulinella Spp

scientific article published on 01 January 2020

The case of horizontal gene transfer from bacteria to the peculiar dinoflagellate plastid genome

scientific article

The impact of major warming at 14.7 ka on environmental changes and activity of Final Palaeolithic hunters at a local scale (Orawa-Nowy Targ Basin, Western Carpathians, Poland ⬇️

scientific article published on 6 February 2020

The influence of different types of translational inaccuracies on the genetic code structure

scientific article published on 06 March 2019

The influence of habitat preferences on shell morphology in ecophenotypes of Trochulus hispidus complex.

scientific article published in March 2018

The influence of molecular markers and methods on inferring the phylogenetic relationships between the representatives of the Arini (parrots, Psittaciformes), determined on the basis of their complete mitochondrial genomes

scientific article

The intracellular cyanobacteria of Paulinella chromatophora: endosymbionts or organelles?

scientific article

The optimality of the standard genetic code assessed by an eight-objective evolutionary algorithm

scientific article published on 13 December 2018

The relationships between the isoelectric point and: length of proteins, taxonomy and ecology of organisms

scientific article (publication date: 12 June 2007)

The role of crossover operator in evolutionary-based approach to the problem of genetic code optimization.

scientific article published on 20 August 2016

The unique hmuY gene sequence as a specific marker of Porphyromonas gingivalis

scientific article published on 02 July 2013

Virulence factors of Moraxella catarrhalis outer membrane vesicles are major targets for cross-reactive antibodies and have adapted during evolution.

scientific article

Where does bacterial replication start? Rules for predicting the oriC region

scientific article

List of works by Paweł Mackiewicz

A fragment of chloroplast DNA was transferred horizontally, probably from non-eudicots, to mitochondrial genome of Phaseolus.

A new parrot taxon from the Yucatán Peninsula, Mexico-its position within genus Amazona based on morphology and molecular phylogeny ⬇️

AUG as the Translation Start Codon in Circular RNA Molecules: A Connection between Protein-Coding Genes and Transfer RNAs?

Amyloidogenic motifs revealed by n-gram analysis

Analysis of the targeting sequences of an iron-containing superoxide dismutase (SOD) of the dinoflagellate Lingulodinium polyedrum suggests function in multiple cellular compartments

Ancient DNA and dating of cave bear remains from Niedźwiedzia Cave suggest early appearance of Ursus ingressus in Sudetes

Basic principles of the genetic code extension

Benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data

Chromalveolate plastids: direct descent or multiple endosymbioses?

Complete mitochondrial genome of Blue-and-yellow Macaw (Ara ararauna): the species morphologically similar to Blue-throated Macaw (Ara glaucogularis).

Complete mitochondrial genome of Blue-winged Macaw (Primolius maracana).

Complete mitochondrial genome of Mitred Conure (Psittacara mitratus): its comparison with mitogenome of Socorro Conure (Psittacara brevipes).

Complete mitochondrial genome of Red-throated Conure (Psittacara rubritorquis): its comparison with mitogenome of Socorro Conure (Psittacara brevipes).

Copy number of bean mitochondrial genes estimated by real-time PCR does not correlate with the number of gene loci and transcript levels.

Correction: A new parrot taxon from the Yucatán Peninsula, Mexico-its position within genus Amazona based on morphology and molecular phylogeny.

Correction: Optimization of the standard genetic code according to three codon positions using an evolutionary algorithm

Cymbomonas tetramitiformis - a peculiar prasinophyte with a taste for bacteria sheds light on plastid evolution

Deficiency of mitoribosomal S10 protein affects translation and splicing in Arabidopsis mitochondria

DiaA/HobA and DnaA: a pair of proteins co-evolved to cooperate during bacterial orisome assembly

Did trypanosomatid parasites contain a eukaryotic alga-derived plastid in their evolutionary past?

Direct and inverted repeats elicit genetic instability by both exploiting and eluding DNA double-strand break repair systems in mycobacteria

Early steps in plastid evolution: current ideas and controversies

Electromagnetic Field Seems to Not Influence Transcription via CTCT Motif in Three Plant Promoters.

Estimating the extinction time of two cave bears, Ursus spelaeus and U. ingressus ⬇️

Evidence for Horizontal Gene Transfer from Bacteroidetes Bacteria to Dinoflagellate Minicircles ⬇️

Evolutionary history and phylogeographic relationships of shrews from Sorex araneus group

First ancient DNA sequences of the Late Pleistocene red deer (Cervus elaphus) from the Crimea, Ukraine

High divergence rate of sequences located on different DNA strands in closely related bacterial genomes

Higher mutation rate helps to rescue genes from the elimination by selection

How many protein-coding genes are there in theSaccharomyces cerevisiae genome?

How protein targeting to primary plastids via the endomembrane system could have evolved? A new hypothesis based on phylogenetic studies

Impact of climatic changes in the Late Pleistocene on migrations and extinctions of mammals in Europe: four case studies

Innate immune properties of selected human neuropeptides against Moraxella catarrhalis and nontypeable Haemophilus influenzae

Isolation and characterisation of KP34--a novel φKMV-like bacteriophage for Klebsiella pneumoniae

Many alternative and theoretical genetic codes are more robust to amino acid replacements than the standard genetic code

Methods for comparing multiple digital PCR experiments

Monophyly of Archaeplastida supergroup and relationships among its lineages in the light of phylogenetic and phylogenomic studies. Are we close to a consensus?

Morphology, phylogeny, and molecular dating in Plagiogrammaceae family focused on Plagiogramma-Dimeregramma complex (Urneidophycidae, Bacillariophyceae)

New insight into parrots' mitogenomes indicates that their ancestor contained a duplicated region

New view on the organization and evolution of Palaeognathae mitogenomes poses the question on the ancestral gene rearrangement in Aves

Ongoing Speciation and Gene Flow between Taxonomically Challenging Trochulus Species Complex (Gastropoda: Hygromiidae).

Optimization of Mutation Pressure in Relation to Properties of Protein-Coding Sequences in Bacterial Genomes

Optimization of amino acid replacement costs by mutational pressure in bacterial genomes

Optimization of the standard genetic code according to three codon positions using an evolutionary algorithm

Optimization of the standard genetic code in terms of two mutation types: Point mutations and frameshifts

Organelle Evolution: Paulinella Breaks a Paradigm

ParA and ParB coordinate chromosome segregation with cell elongation and division during Streptomyces sporulation.

Phenotypic plasticity can explain evolution of sympatric polymorphism in the hairy snail Trochulus hispidus (Linnaeus, 1758).

PhyMet2 : a database and toolkit for phylogenetic and metabolic analyses of methanogens.

Phylogenetic background, virulence gene profiles, and genomic diversity in commensal Escherichia coli isolated from ten mammal species living in one zoo.

Phylogeny and evolution of Rab7 and Rab9 proteins

Phylogeny of Amazona barbadensis and the Yellow-headed Amazon complex (Aves: Psittacidae): a new look at South American parrot evolution

Possible import routes of proteins into the cyanobacterial endosymbionts/plastids of Paulinella chromatophora

Prediction of Signal Peptides in Proteins from Malaria Parasites

Prevotella intermedia produces two proteins homologous to Porphyromonas gingivalis HmuY but with different heme coordination mode

Protein import into the photosynthetic organelles of Paulinella chromatophora and its implications for primary plastid endosymbiosis

Quaternary skulls of the saiga antelope from Eastern Europe and Siberia: Saiga borealis versus Saiga tatarica – One species or two?

Rearrangements between differently replicating DNA strands in asymmetric bacterial genomes.

Replication associated mutational pressure generating long-range correlation in DNA

Representation of mutation pressure and selection pressure by PAM matrices

Representations of Search Spaces in the Problem of Mutational Pressure Optimization According to Protein-Coding Sequences

Resolving Phylogenetic Relationships within Passeriformes Based on Mitochondrial Genes and Inferring the Evolution of Their Mitogenomes in Terms of Duplications

Simulation of gene evolution under directional mutational pressure

Speciation in sympatric species of land snails from the genus <i>Trochulus</i> (Gastropoda, Hygromiidae)

Streptomyces sudanensis sp. nov., a new pathogen isolated from patients with actinomycetoma.

Temporal variation in climatic factors influences phenotypic diversity of Trochulus land snails

Tfo belongs to HmuY-like family of proteins but differs in heme-binding properties

The Impact of Selection at the Amino Acid Level on the Usage of Synonymous Codons.

The Influence of Climate on Shell Variation in Trochulus striolatus (C. Pfeiffer, 1828) (Gastropoda: Hygromiidae) and Its Implications for Subspecies Taxonomy

The Photosynthetic Adventure of Paulinella Spp

The case of horizontal gene transfer from bacteria to the peculiar dinoflagellate plastid genome

The impact of major warming at 14.7 ka on environmental changes and activity of Final Palaeolithic hunters at a local scale (Orawa-Nowy Targ Basin, Western Carpathians, Poland ⬇️

The influence of different types of translational inaccuracies on the genetic code structure

The influence of habitat preferences on shell morphology in ecophenotypes of Trochulus hispidus complex.

The influence of molecular markers and methods on inferring the phylogenetic relationships between the representatives of the Arini (parrots, Psittaciformes), determined on the basis of their complete mitochondrial genomes

The intracellular cyanobacteria of Paulinella chromatophora: endosymbionts or organelles?

The optimality of the standard genetic code assessed by an eight-objective evolutionary algorithm

The relationships between the isoelectric point and: length of proteins, taxonomy and ecology of organisms

The role of crossover operator in evolutionary-based approach to the problem of genetic code optimization.