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List of works by Benjamin P Vandervalk

ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter.

scientific article

Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics' GemCode Sequencing Data.

scientific article

ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data.

scientific article published on 29 December 2017

DIDA: Distributed Indexing Dispatched Alignment.

scientific article published on 29 April 2015

Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism

scientific article published on 28 May 2015

Kollector: transcript-informed, targeted de novo assembly of gene loci

scientific article published on 01 September 2017

Kollector: transcript-informed, targeted de novo assembly of gene loci.

scientific article

Konnector v2.0: pseudo-long reads from paired-end sequencing data

scientific article

LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads.

scientific article published on 4 August 2015

Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation

scientific article published on 8 December 2015

Sealer: a scalable gap-closing application for finishing draft genomes.

scientific article published on 25 July 2015

Spaced Seed Data Structures for De Novo Assembly.

scientific article

The North American bullfrog draft genome provides insight into hormonal regulation of long noncoding RNA.

scientific article

ntHash: recursive nucleotide hashing

scientific article published on 16 July 2016

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