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List of works by Frederick A Matsen

A Bayesian phylogenetic hidden Markov model for B cell receptor sequence analysis

scientific article published on 17 August 2020

A surrogate function for one-dimensional phylogenetic likelihoods.

scientific article published on 26 September 2017

Comment on "A Database of Human Immune Receptor Alleles Recovered from Population Sequencing Data".

scientific article published in May 2017

Deep generative models for T cell receptor protein sequences

scientific article published on 05 September 2019

Dynamics of HIV DNA reservoir seeding in a cohort of superinfected Kenyan women

scientific article published on 05 February 2020

High resolution profiling of pathways of escape for SARS-CoV-2 spike-binding antibodies

scientific article published on 16 November 2020

Human T cell receptor occurrence patterns encode immune history, genetic background, and receptor specificity

scientific article published on 28 August 2018

Kappa chain maturation helps drive rapid development of an infant HIV-1 broadly neutralizing antibody lineage

article

Lack of Evidence for a Substantial Rate of Templated Mutagenesis in B Cell Diversification

scientific article published on 15 July 2020

Likelihood-Based Inference of B Cell Clonal Families. ⬇️

scientific article

Predicting B cell receptor substitution profiles using public repertoire data

scientific article published on 17 October 2018

Quantifying evolutionary constraints on B-cell affinity maturation

scientific article

Ricci–Ollivier curvature of the rooted phylogenetic subtree–prune–regraft graph

scientific article published in 2017

The combinatorics of discrete time-trees: theory and open problems.

scientific article

Using B cell receptor lineage structures to predict affinity

scientific article published on 11 November 2020

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