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List of works by Ryota Yamagami

Cellular Concentrations of Nucleotide Diphosphate-Chelated Magnesium Ions Accelerate Catalysis by RNA and DNA Enzymes

scientific article published on 12 September 2019

Cellular conditions of weakly chelated magnesium ions strongly promote RNA stability and catalysis.

scientific article

Consumption of N5, N10-methylenetetrahydrofolate in Thermus thermophilus under nutrient-poor condition

scientific article published on 01 August 2018

Design of highly active double-pseudoknotted ribozymes: a combined computational and experimental study

scientific article published on 01 January 2019

Folate-/FAD-dependent tRNA methyltransferase from Thermus thermophilus regulates other modifications in tRNA at low temperatures.

scientific article published on 30 May 2016

Improved solid-phase DNA probe method for tRNA purification: large-scale preparation and alteration of DNA fixation

scientific article published on 07 January 2015

In vitro dihydrouridine formation by tRNA dihydrouridine synthase from Thermus thermophilus, an extreme-thermophilic eubacterium.

scientific article published on 24 June 2015

Long and branched polyamines are required for maintenance of the ribosome, tRNAHis and tRNATyr in Thermus thermophilus cells at high temperatures.

scientific article published on 24 May 2017

Single-nucleotide control of tRNA folding cooperativity under near-cellular conditions

scientific article published on 30 October 2019

The catalytic domain of topological knot tRNA methyltransferase (TrmH) discriminates between substrate tRNA and nonsubstrate tRNA via an induced-fit process.

scientific article

The tRNA Recognition Mechanism of Folate/FAD-dependent tRNA Methyltransferase (TrmFO) ⬇️

scientific article published on October 24, 2012

Transfer RNA Modification Enzymes from Thermophiles and Their Modified Nucleosides in tRNA

scientific article published on 20 October 2018

X-ray structure of the fourth type of archaeal tRNA splicing endonuclease: insights into the evolution of a novel three-unit composition and a unique loop involved in broad substrate specificity

scientific article

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