List of works - Michael J T Stubbington

Aging increases cell-to-cell transcriptional variability upon immune stimulation

scientific article published on March 2017

An atlas of mouse CD4(+) T cell transcriptomes

scientific article

Antigen Receptor Sequence Reconstruction and Clonality Inference from scRNA-Seq Data

scientific article published on 01 January 2019

Are cells from a snowman realistic? Cryopreserved tissues as a source for single-cell RNA-sequencing experiments

scientific article published on 24 March 2017

BraCeR: B-cell-receptor reconstruction and clonality inference from single-cell RNA-seq

scientific article published on 01 August 2018

BraCeR: Reconstruction of B-cell receptor sequences and clonality inference from single-cell RNA-sequencing

Circulating and Tissue-Resident CD4+ T Cells With Reactivity to Intestinal Microbiota Are Abundant in Healthy Individuals and Function Is Altered During Inflammation

scientific article published on 3 August 2017

Decoding human fetal liver haematopoiesis

scientific article published on 09 October 2019

Intrinsic transcriptional heterogeneity in B cells controls early class switching to IgE.

scientific article published on 19 December 2016

Non-coding transcription and large-scale nuclear organisation of immunoglobulin recombination

scientific article published on 22 February 2013

Single-cell RNA-seq and computational analysis using temporal mixture modelling resolves Th1/Tfh fate bifurcation in malaria

scientific article published on March 2017

Single-cell analysis at the threshold

scientific article

Single-cell reconstruction of the early maternal–fetal interface in humans

scientific article published in Nature

Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immune cell types

scientific article published on 13 January 2017

Single-cell transcriptomics to explore the immune system in health and disease

scientific article

T cell fate and clonality inference from single-cell transcriptomes

scientific article

Temporal mixture modelling of single-cell RNA-seq data resolves a CD4+ T cell fate bifurcation

article

The Human Cell Atlas

scientific article

The Human Cell Atlas

The Human Cell Atlas White Paper ⬇️

journal article from 'arXiv:1810.05192 [q-bio]' published in 2018

The Human Cell Atlas: Technical approaches and challenges

scientific article published on 28 October 2017

The Human Cell Atlas: from vision to reality

scientific article published in October 2017

The Regulatory T Cell Lineage Factor Foxp3 Regulates Gene Expression through Several Distinct Mechanisms Mostly Independent of Direct DNA Binding

scientific article published on May 2015

Two Mutually Exclusive Local Chromatin States Drive Efficient V(D)J Recombination

scientific article published on 31 May 2016

scHLAcount: Allele-specific HLA expression from single-cell gene expression data

scientific article published on 24 April 2020

scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation

scientific article published on 31 December 2019

List of works by Michael J T Stubbington

Aging increases cell-to-cell transcriptional variability upon immune stimulation

An atlas of mouse CD4(+) T cell transcriptomes

Antigen Receptor Sequence Reconstruction and Clonality Inference from scRNA-Seq Data

Are cells from a snowman realistic? Cryopreserved tissues as a source for single-cell RNA-sequencing experiments

BraCeR: B-cell-receptor reconstruction and clonality inference from single-cell RNA-seq

BraCeR: Reconstruction of B-cell receptor sequences and clonality inference from single-cell RNA-sequencing

Circulating and Tissue-Resident CD4+ T Cells With Reactivity to Intestinal Microbiota Are Abundant in Healthy Individuals and Function Is Altered During Inflammation

Decoding human fetal liver haematopoiesis

Intrinsic transcriptional heterogeneity in B cells controls early class switching to IgE.

Non-coding transcription and large-scale nuclear organisation of immunoglobulin recombination

Single-cell RNA-seq and computational analysis using temporal mixture modelling resolves Th1/Tfh fate bifurcation in malaria

Single-cell analysis at the threshold

Single-cell reconstruction of the early maternal–fetal interface in humans

Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immune cell types

Single-cell transcriptomics to explore the immune system in health and disease

T cell fate and clonality inference from single-cell transcriptomes

Temporal mixture modelling of single-cell RNA-seq data resolves a CD4+ T cell fate bifurcation

The Human Cell Atlas

The Human Cell Atlas

The Human Cell Atlas White Paper ⬇️

The Human Cell Atlas: Technical approaches and challenges

The Human Cell Atlas: from vision to reality

The Regulatory T Cell Lineage Factor Foxp3 Regulates Gene Expression through Several Distinct Mechanisms Mostly Independent of Direct DNA Binding

Two Mutually Exclusive Local Chromatin States Drive Efficient V(D)J Recombination

scHLAcount: Allele-specific HLA expression from single-cell gene expression data

scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation