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List of works by Md Abul Hassan Samee

A De Novo Shape Motif Discovery Algorithm Reveals Preferences of Transcription Factors for DNA Shape Beyond Sequence Motifs

scientific article published on 16 January 2019

A Systematic Ensemble Approach to Thermodynamic Modeling of Gene Expression from Sequence Data.

scientific article

CRISPR-DIPOFF: an interpretable deep learning approach for CRISPR Cas-9 off-target prediction

scientific article published on 22 January 2024

Complex Interdependence Regulates Heterotypic Transcription Factor Distribution and Coordinates Cardiogenesis

scientific article

Evaluating thermodynamic models of enhancer activity on cellular resolution gene expression data.

scientific article

Evidence for deep regulatory similarities in early developmental programs across highly diverged insects

scientific article

Global parameter estimation for thermodynamic models of transcriptional regulation.

scientific article published on 30 May 2013

Multinomial Convolutions for Joint Modeling of Regulatory Motifs and Sequence Activity Readouts

scientific article published on 8 September 2022

Quantitative Measurement and Thermodynamic Modeling of Fused Enhancers Support a Two-Tiered Mechanism for Interpreting Regulatory DNA.

scientific article published in October 2017

Quantitative modeling of a gene's expression from its intergenic sequence.

scientific article

Simulations of enhancer evolution provide mechanistic insights into gene regulation.

scientific article published on 04 October 2013

Thermodynamics-Based Models of Transcriptional Regulation by Enhancers: The Roles of Synergistic Activation, Cooperative Binding and Short-Range Repression ⬇️

scientific article published on September 16, 2010

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