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List of works by Shinji Fukuda

A 3-dimensional mathematical model of microbial proliferation that generates the characteristic cumulative relative abundance distributions in gut microbiomes

scientific article published on 08 August 2017

A Metabologenomic Approach Reveals Changes in the Intestinal Environment of Mice Fed on American Diet ⬇️

scientific article published on 17 December 2018

A Metabolomic-Based Evaluation of the Role of Commensal Microbiota throughout the Gastrointestinal Tract in Mice

scientific article published on 29 September 2018

A novel mucosal vaccine targeting Peyer's patch M cells induces protective antigen-specific IgA responses

scientific article

AP-1B-mediated protein sorting regulates polarity and proliferation of intestinal epithelial cells in mice.

scientific article published on 16 May 2013

Acetate-producing bifidobacteria protect the host from enteropathogenic infection via carbohydrate transporters ⬇️

scientific article published on July 24, 2012

Application of a Mouse Ligated Peyer’s Patch Intestinal Loop Assay to Evaluate Bacterial Uptake by M cells ⬇️

scientific article published on December 17, 2011

Association of colitis with gut-microbiota dysbiosis in clathrin adapter AP-1B knockout mice

scientific article published on 24 March 2020

Bacillus hisashii sp. nov., isolated from the caeca of gnotobiotic mice fed with thermophile-fermented compost

scientific article

Beta-galactosidase-responsive synthetic biomarker for targeted tumor detection

scientific article published on 01 October 2018

Bifidobacteria can protect from enteropathogenic infection through production of acetate ⬇️

scientific article (publication date: 27 January 2011)

Bifidobacterium kashiwanohense sp. nov., isolated from healthy infant faeces

scientific article

Botulinum toxin A complex exploits intestinal M cells to enter the host and exert neurotoxicity

scientific article

Cholera toxin B induces interleukin-1β production from resident peritoneal macrophages through the pyrin inflammasome as well as the NLRP3 inflammasome

scientific article published on 01 September 2019

Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells

scientific article (publication date: 19 December 2013)

Comparative genome analysis of Lactobacillus reuteri and Lactobacillus fermentum reveal a genomic island for reuterin and cobalamin production

scientific article

Comparison of oral microbiome profiles in stimulated and unstimulated saliva, tongue, and mouth-rinsed water

scientific article published on 06 November 2019

Complete Genome Sequence of Bifidobacterium longum Strain Jih1, Isolated from Human Feces

scientific article published on 28 May 2020

Complete Genome Sequences of Two Cutibacterium acnes Strains Isolated from an Orthopedic Surgical Site

scientific article published on 23 April 2020

Complete genome sequences of rat and mouse segmented filamentous bacteria, a potent inducer of th17 cell differentiation

scientific article published in September 2011

Conjunctival Injection Reduction in Patients with Atopic Keratoconjunctivitis Due to Synergic Effect of Bovine Enteric-Coated Lactoferrin in 0.1% Tacrolimus Ophthalmic Suspension

scientific article published on 25 September 2020

Core microbiomes for sustainable agroecosystems

scientific article published on 01 May 2018

Cutibacterium acnes (Propionibacterium acnes) 16S rRNA Genotyping of Microbial Samples from Possessions Contributes to Owner Identification

scientific article published on 26 November 2019

Decoding gut microbiota by imaging analysis of fecal samples

scientific article published on 22 November 2021

Dietary L-serine confers a competitive fitness advantage to Enterobacteriaceae in the inflamed gut

scientific article published on 04 November 2019

Draft Genome Sequences of Bifidobacterium animalis Consecutively Isolated from Healthy Japanese Individuals

scientific article published on 06 April 2020

Draft Genome Sequences of Enterococcus faecalis Strains Isolated from Healthy Japanese Individuals

scientific article published on 03 October 2019

Dynamic omics approach identifies nutrition-mediated microbial interactions

scientific article published on 20 December 2010

Effects of bowel preparation on the human gut microbiome and metabolome

scientific article published on 11 March 2019

Efficacy of Indigo naturalis in a Multicenter Randomized Controlled Trial of Patients with Ulcerative Colitis

scientific article published on 22 November 2017

Eggshell membrane powder ameliorates intestinal inflammation by facilitating the restitution of epithelial injury and alleviating microbial dysbiosis.

scientific article published on 08 March 2017

Erratum: Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells

scientific article published in Nature

Essential role of the Crk family-dosage in DiGeorge-like anomaly and metabolic homeostasis

scientific article published on 10 February 2020

Evaluation and characterization of bacterial metabolic dynamics with a novel profiling technique, real-time metabolotyping

scientific article

Exposure to probiotic Lactobacillus acidophilus L-92 modulates gene expression profiles of epithelial Caco-2 cells.

scientific article

Fatty acids in a high-fat diet potentially induce gastric parietal-cell damage and metaplasia in mice.

scientific article

Germ-Free Conditions Modulate Host Purine Metabolism, Exacerbating Adenine-Induced Kidney Damage

scientific article published on 26 August 2020

Global metabolic reprogramming of colorectal cancer occurs at adenoma stage and is induced by MYC.

scientific article published on 28 August 2017

Gut microbiome and metabolic diseases.

scientific article

Hyperactivation of JAK1 tyrosine kinase induces stepwise, progressive pruritic dermatitis

scientific article

Identification of TOSO/FAIM3 as an Fc receptor for IgM.

scientific article published on 30 December 2009

Identification of novel genes selectively expressed in the follicle-associated epithelium from the meta-analysis of transcriptomics data from multiple mouse cell and tissue populations.

scientific article

In vitro evaluation method for screening of candidate prebiotic foods

scientific article published in December 2013

Influence of gastrectomy for gastric cancer treatment on faecal microbiome and metabolome profiles

scientific article published on 16 January 2020

Interleukin-22-mediated host glycosylation prevents Clostridioides difficile infection by modulating the metabolic activity of the gut microbiota

scientific article published on 17 February 2020

Intermittent fasting prompted recovery from dextran sulfate sodium-induced colitis in mice

scientific article published on 28 July 2017

Intestinal Dysbiosis and Biotin Deprivation Induce Alopecia through Overgrowth of Lactobacillus murinus in Mice

scientific article published in August 2017

Lactobacillus acidophilus L-92 Cells Activate Expression of Immunomodulatory Genes in THP-1 Cells

scientific article

Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer

scientific article published on 06 June 2019

Microbiota-derived lactate accelerates colon epithelial cell turnover in starvation-refed mice

scientific article published in Nature Communications

Multiple omics uncovers host-gut microbial mutualism during prebiotic fructooligosaccharide supplementation

scientific article

NALT M cells are important for immune induction for the common mucosal immune system.

scientific article published on 27 November 2017

Neonatal acquisition of Clostridia species protects against colonization by bacterial pathogens.

scientific article published on April 2017

New approach for m-cell-specific molecules screening by comprehensive transcriptome analysis.

scientific article

New monitoring approach for metabolic dynamics in microbial ecosystems using stable-isotope-labeling technologies

scientific article published on 27 January 2010

Paternal restraint stress affects offspring metabolism via ATF-2 dependent mechanisms in Drosophila melanogaster germ cells

scientific article published on 04 May 2020

Periodontal disease bacteria specific to tonsil in IgA nephropathy patients predicts the remission by the treatment.

scientific article published on 28 January 2014

Probiotic Bifidobacterium longum alters gut luminal metabolism through modification of the gut microbial community

scientific article

Protective effects of bifidobacteria against enteropathogens

scientific article published on 08 July 2019

Proton Pump Inhibitors Increase the Susceptibility of Mice to Oral Infection with Enteropathogenic Bacteria

scientific article published on 11 January 2018

Psg18 Is Specifically Expressed in Follicle-associated Epithelium

scientific article published on 05 November 2007

Publisher Correction: Core microbiomes for sustainable agroecosystems

scientific article published on 01 September 2018

Publisher Correction: Paternal restraint stress affects offspring metabolism via ATF-2 dependent mechanisms in Drosophila melanogaster germ cells

scientific article published on 18 May 2020

Robustness of gut microbiota of healthy adults in response to probiotic intervention revealed by high-throughput pyrosequencing

scientific article published on 09 April 2013

Surgical Treatment for Colorectal Cancer Partially Restores Gut Microbiome and Metabolome Traits

scientific article published in 2022

Symbiotic polyamine metabolism regulates epithelial proliferation and macrophage differentiation in the colon

scientific article published on 08 April 2021

Synthetic Biomarker Design by Using Analyte-Responsive Acetaminophen

scientific article published on 25 February 2017

The Consumption of Bicarbonate-Rich Mineral Water Improves Glycemic Control

scientific article

The Ets transcription factor Spi-B is essential for the differentiation of intestinal microfold cells

scientific article published on 17 June 2012

The epithelia-specific membrane trafficking factor AP-1B controls gut immune homeostasis in mice.

scientific article published on 5 May 2011

The guanylate cyclase C agonist linaclotide ameliorates the gut-cardio-renal axis in an adenine-induced mouse model of chronic kidney disease

scientific article published on 01 February 2020

Thermophile-fermented compost as a possible scavenging feed additive to prevent peroxidation

scientific article published on 19 March 2013

Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota ⬇️

scientific article (publication date: 8 August 2013)

Understanding the role of the gut ecosystem in diabetes mellitus

scientific article published on 8 April 2017

Uptake through glycoprotein 2 of FimH(+) bacteria by M cells initiates mucosal immune response

scientific journal article

Uromodulin-SlpA binding dictates Lactobacillus acidophilus uptake by intestinal epithelial M cells.

scientific article published on 22 July 2017

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