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List of works by W-K Sung

3D chromosome modeling with semi-definite programming and Hi-C data

scientific article

AP-2γ regulates oestrogen receptor-mediated long-range chromatin interaction and gene transcription

Adjacent nucleotide dependence in ncRNA and order-1 SCFG for ncRNA identification.

scientific article

Algorithms for the Majority Rule (+) Consensus Tree and the Frequency Difference Consensus Tree.

scientific article published on 20 September 2016

An Efficient Algorithm for the Rooted Triplet Distance Between Galled Trees

scientific article published on 16 April 2019

An O(m log m)-Time Algorithm for Detecting Superbubbles

scientific article published in July 2015

An integrated package for bisulfite DNA methylation data analysis with Indel-sensitive mapping

scientific article published on 22 January 2019

An intrinsic mechanism controls reactivation of neural stem cells by spindle matrix proteins.

scientific article

An oestrogen-receptor-α-bound human chromatin interactome

scientific article (publication date: 5 November 2009)

BATVI: Fast, sensitive and accurate detection of virus integrations.

scientific article

BatAlign: an incremental method for accurate alignment of sequencing reads

scientific article

BatMis: a fast algorithm for k-mismatch mapping ⬇️

scientific article published on June 10, 2012

CENTDIST: discovery of co-associated factors by motif distribution ⬇️

scientific article published on May 20, 2011

CWig: compressed representation of Wiggle/BedGraph format.

scientific article published on 27 May 2014

Calling large indels in 1047 Arabidopsis with IndelEnsembler

scientific article published on 01 November 2021

Cellular reprogramming by the conjoint action of ERα, FOXA1, and GATA3 to a ligand-inducible growth state.

scientific article

ChIA-PET analysis of transcriptional chromatin interactions.

scientific article

Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations

scientific article

Chromatin loops associated with active genes and heterochromatin shape rice genome architecture for transcriptional regulation

scientific article published on 13 August 2019

Comparison of microarray-predicted closest genomes to sequencing for poliovirus vaccine strain similarity and influenza A phylogeny

scientific article published on 6 November 2015

Comprehensive analysis of transcriptome profiles in hepatocellular carcinoma

scientific article published on 20 August 2019

Computing a Smallest Multilabeled Phylogenetic Tree from Rooted Triplets ⬇️

scientific article published on July 1, 2011

Constructing phylogenetic supernetworks based on simulated annealing ⬇️

scientific article published on March 3, 2012

D-SLIMMER: Domain–SLiM Interaction Motifs Miner for Sequence Based Protein–Protein Interaction Data ⬇️

scientific article published on December 2, 2011

Decoding complex patterns of genomic rearrangement in hepatocellular carcinoma.

scientific article published on 21 January 2014

Determining the Consistency of Resolved Triplets and Fan Triplets

scientific article published on 16 February 2018

Differential transcriptomic analyses revealed genes and signaling pathways involved in iono-osmoregulation and cellular remodeling in the gills of euryhaline Mozambique tilapia, Oreochromis mossambicus

scientific article

Do triplets have enough information to construct the multi-labeled phylogenetic tree?

scientific article

Extensive Promoter-Centered Chromatin Interactions Provide a Topological Basis for Transcription Regulation ⬇️

scientific article (publication date: 20 January 2012)

Genome-wide mapping of Myc binding and gene regulation in serum-stimulated fibroblasts.

scientific article published on 22 August 2011

Guest Editorial for the International Conference on Genome Informatics (GIW 2013).

scientific article

Identifying Differential Histone Modification Sites from ChIP‐seq Data ⬇️

scientific article published on January 1, 2012

Immune genes are primed for robust transcription by proximal long noncoding RNAs located in nuclear compartments

scientific article published on 10 December 2018

Integration of Regulatory Networks by NKX3-1 Promotes Androgen-Dependent Prostate Cancer Survival ⬇️

scientific article published on November 14, 2011

International Conference on Genome Informatics (GIW 2013) in Singapore: Introduction to the systems biology contributions

scientific article

Large-scale functional organization of long-range chromatin interaction networks

scientific article

Long span DNA paired-end-tag (DNA-PET) sequencing strategy for the interrogation of genomic structural mutations and fusion-point-guided reconstruction of amplicons.

scientific article

Mammalian Systems Biotechnology Reveals Global Cellular Adaptations in a Recombinant CHO Cell Line.

scientific article

Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences ⬇️

scientific article published on September 19, 2011

PE-Assembler: de novo assembler using short paired-end reads ⬇️

scientific article published on December 12, 2010

Pan-omics analysis of biological data

scientific article published on 11 May 2016

Platform comparison for evaluation of ALK protein immunohistochemical expression, genomic copy number and hotspot mutation status in neuroblastomas

scientific article

Polynomial-Time Algorithms for Building a Consensus MUL-Tree ⬇️

scientific article published on September 1, 2012

Publisher Correction: Immune genes are primed for robust transcription by proximal long noncoding RNAs located in nuclear compartments

scientific article published on 01 February 2019

Recurrent Fusion Genes in Gastric Cancer: CLDN18-ARHGAP26 Induces Loss of Epithelial Integrity

scientific article

Simultaneously learning DNA motif along with its position and sequence rank preferences through expectation maximization algorithm.

scientific article

Structural variation detection using next-generation sequencing data: A comparative technical review.

scientific article

SurVIndel: improving CNV calling from high-throughput sequencing data through statistical testing

scientific article published on 15 April 2019

SurVirus: a repeat-aware virus integration caller

scientific article published on 01 April 2021

Telomerase directly regulates NF-κB-dependent transcription.

scientific article

The Integrator Complex Prevents Dedifferentiation of Intermediate Neural Progenitors back into Neural Stem Cells

scientific article published on 01 April 2019

The spatial organization of intra-tumour heterogeneity and evolutionary trajectories of metastases in hepatocellular carcinoma

scientific article published on 27 February 2017

TranSurVeyor: an improved database-free algorithm for finding non-reference transpositions in high-throughput sequencing data.

scientific article

Whole-genome reconstruction and mutational signatures in gastric cancer.

scientific article

Whole-genome sequencing identifies recurrent mutations in hepatocellular carcinoma

scientific article published on 20 June 2013

Xenopus tropicalis Genome Re-Scaffolding and Re-Annotation Reach the Resolution Required for In Vivo ChIA-PET Analysis

scientific article published on 8 September 2015

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