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List of works by Chuya Shinzato

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Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure.

scientific article
Draft Genome of the Pearl Oyster Pinctada fucata: A Platform for Understanding Bivalve Biology

scientific article (publication date: April 2012)
Comparative genomics explains the evolutionary success of reef-forming corals

scientific article
The crown-of-thorns starfish genome as a guide for biocontrol of this coral reef pest

scientific article
The complex NOD-like receptor repertoire of the coral Acropora digitifera includes novel domain combinations.

scientific article published on 30 August 2012
The transcriptomic response of the coral Acropora digitifera to a competent Symbiodinium strain: the symbiosome as an arrested early phagosome.

scientific article
A snapshot of a coral "holobiont": a transcriptome assembly of the scleractinian coral, porites, captures a wide variety of genes from both the host and symbiotic zooxanthellae.

scientific article published on 15 January 2014
Massive gene transfer and extensive RNA editing of a symbiotic dinoflagellate plastid genome

scientific article published on 31 May 2014
Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes

scientific article
Genome-wide SNP analysis explains coral diversity and recovery in the Ryukyu Archipelago

scientific article
A draft genome of the brown alga, Cladosiphon okamuranus, S-strain: a platform for future studies of 'mozuku' biology.

scientific article published on 8 August 2016
Stepwise Evolution of Coral Biomineralization Revealed with Genome-Wide Proteomics and Transcriptomics

scientific article (publication date: 2016)
Fluorescent Protein Candidate Genes in the Coral Acropora digitifera Genome

scientific article published on April 1, 2012
A genomic approach to coral-dinoflagellate symbiosis: studies of Acropora digitifera and Symbiodinium minutum

scientific article
A genome-wide survey of photoreceptor and circadian genes in the coral, Acropora digitifera.

scientific article published on 20 December 2012
The Mesoderm-Forming Gene brachyury Regulates Ectoderm-Endoderm Demarcation in the Coral Acropora digitifera

scientific article published on 15 September 2016
How do environmental factors influence life cycles and development? An experimental framework for early-diverging metazoans

scientific article
Deciphering the nature of the coral-Chromera association

scientific article published on 10 January 2018
Novel Polymorphic Microsatellite Markers Reveal Genetic Differentiation between Two Sympatric Types of Galaxea fascicularis.

scientific article published on 6 July 2015
The repertoire of chemical defense genes in the coral Acropora digitifera genome.

scientific article
Medusozoan genomes inform the evolution of the jellyfish body plan

scientific article published on 15 April 2019
An aposymbiotic primary coral polyp counteracts acidification by active pH regulation.

scientific article
The Large Mitochondrial Genome of Symbiodinium minutum Reveals Conserved Noncoding Sequences between Dinoflagellates and Apicomplexans.

scientific article published on 20 July 2015
Genetic differentiation and connectivity of morphological types of the broadcast-spawning coral Galaxea fascicularis in the Nansei Islands, Japan

scientific article published on 3 February 2016
Transcriptome analysis of the reef-building octocoral, Heliopora coerulea

scientific article published on 30 May 2018
Metabolic co-dependence drives the evolutionarily ancient Hydra-Chlorella symbiosis.

scientific article
Calcification process dynamics in coral primary polyps as observed using a calcein incubation method

scientific article published on 24 January 2017
The mitochondrial genome sequence of a deep-sea, hydrothermal vent limpet, Lepetodrilus nux, presents a novel vetigastropod gene arrangement.

scientific article
A siphonous macroalgal genome suggests convergent functions of homeobox genes in algae and land plants

scientific article published on 01 April 2019
Evolutionary affinities of the unfathomable Parabrotulidae: Molecular data indicate placement of Parabrotula within the family Bythitidae, Ophidiiformes

scientific article
Unexpectedly complex gradation of coral population structure in the Nansei Islands, Japan

scientific article published on 12 July 2016
A draft genome of the striped catfish, Pangasianodon hypophthalmus, for comparative analysis of genes relevant to development and a resource for aquaculture improvement

scientific article published on 05 October 2018
Microsatellite markers for multiple Pocillopora genetic lineages offer new insights about coral populations

scientific article
Probing a coral genome for components of the photoprotective scytonemin biosynthetic pathway and the 2-aminoethylphosphonate pathway

scientific article published on 22 February 2013
Biochemical characterization of the skeletal matrix of the massive coral, Porites australiensis - The saccharide moieties and their localization

scientific article published on 30 May 2018
Bloodmeal host identification with inferences to feeding habits of a fish-fed mosquito, Aedes baisasi

scientific article published on 08 March 2019
Publisher Correction: Medusozoan genomes inform the evolution of the jellyfish body plan

scientific article published on 01 June 2019
Protection of Coral Larvae from Thermally Induced Oxidative Stress by Redox Nanoparticles

scientific article published on 28 April 2018
Telomere Shortening in the Colonial CoralAcropora digitiferaDuring Development

scientific article published on March 1, 2014
Multilocus phylogenetic analysis of the first molecular data from the rare and monotypic Amarsipidae places the family within the Pelagia and highlights limitations of existing data sets in resolving pelagian interrelationships.

scientific article published on 8 March 2018
Cross-species, amplifiable microsatellite markers for neoverrucid barnacles from deep-sea hydrothermal vents developed using next-generation sequencing

scientific article
Discovery of a receptor guanylate cyclase expressed in the sperm flagella of stony corals

scientific article published on 10 October 2019
Two new species of Rhinogobius (Gobiiformes: Oxudercidae) from Palawan, Philippines, with their phylogenetic placement

scholarly article published in 2021
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma

scientific article published in 2023
Warm seawater temperature promotes substrate colonization by the blue coral, Heliopora coerulea

scientific article published on 27 September 2019

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