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List of works by Chuya Shinzato

A draft genome of the brown alga, Cladosiphon okamuranus, S-strain: a platform for future studies of 'mozuku' biology.

scientific article published on 8 August 2016

A draft genome of the striped catfish, Pangasianodon hypophthalmus, for comparative analysis of genes relevant to development and a resource for aquaculture improvement

scientific article published on 05 October 2018

A genome-wide survey of photoreceptor and circadian genes in the coral, Acropora digitifera.

scientific article published on 20 December 2012

A genomic approach to coral-dinoflagellate symbiosis: studies of Acropora digitifera and Symbiodinium minutum

scientific article

A siphonous macroalgal genome suggests convergent functions of homeobox genes in algae and land plants

scientific article published on 01 April 2019

A snapshot of a coral "holobiont": a transcriptome assembly of the scleractinian coral, porites, captures a wide variety of genes from both the host and symbiotic zooxanthellae.

scientific article published on 15 January 2014

An aposymbiotic primary coral polyp counteracts acidification by active pH regulation.

scientific article

Biochemical characterization of the skeletal matrix of the massive coral, Porites australiensis - The saccharide moieties and their localization

scientific article published on 30 May 2018

Bloodmeal host identification with inferences to feeding habits of a fish-fed mosquito, Aedes baisasi

scientific article published on 08 March 2019

Calcification process dynamics in coral primary polyps as observed using a calcein incubation method

scientific article published on 24 January 2017

Comparative genomics explains the evolutionary success of reef-forming corals

scientific article

Cross-species, amplifiable microsatellite markers for neoverrucid barnacles from deep-sea hydrothermal vents developed using next-generation sequencing

scientific article

Deciphering the nature of the coral-Chromera association

scientific article published on 10 January 2018

Discovery of a receptor guanylate cyclase expressed in the sperm flagella of stony corals

scientific article published on 10 October 2019

Draft Genome of the Pearl Oyster Pinctada fucata: A Platform for Understanding Bivalve Biology

scientific article (publication date: April 2012)

Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure.

scientific article

Evolutionary affinities of the unfathomable Parabrotulidae: Molecular data indicate placement of Parabrotula within the family Bythitidae, Ophidiiformes

scientific article

Fluorescent Protein Candidate Genes in the Coral Acropora digitifera Genome

scientific article published on April 1, 2012

Genetic differentiation and connectivity of morphological types of the broadcast-spawning coral Galaxea fascicularis in the Nansei Islands, Japan

scientific article published on 3 February 2016

Genome-wide SNP analysis explains coral diversity and recovery in the Ryukyu Archipelago

scientific article

Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, <i>Lamellibrachia satsuma</i>

scientific article published in 2023

How do environmental factors influence life cycles and development? An experimental framework for early-diverging metazoans

scientific article

Massive gene transfer and extensive RNA editing of a symbiotic dinoflagellate plastid genome

scientific article published on 31 May 2014

Medusozoan genomes inform the evolution of the jellyfish body plan

scientific article published on 15 April 2019

Metabolic co-dependence drives the evolutionarily ancient Hydra-Chlorella symbiosis.

scientific article

Microsatellite markers for multiple Pocillopora genetic lineages offer new insights about coral populations

scientific article

Multilocus phylogenetic analysis of the first molecular data from the rare and monotypic Amarsipidae places the family within the Pelagia and highlights limitations of existing data sets in resolving pelagian interrelationships.

scientific article published on 8 March 2018

Novel Polymorphic Microsatellite Markers Reveal Genetic Differentiation between Two Sympatric Types of Galaxea fascicularis.

scientific article published on 6 July 2015

Probing a coral genome for components of the photoprotective scytonemin biosynthetic pathway and the 2-aminoethylphosphonate pathway

scientific article published on 22 February 2013

Protection of Coral Larvae from Thermally Induced Oxidative Stress by Redox Nanoparticles

scientific article published on 28 April 2018

Publisher Correction: Medusozoan genomes inform the evolution of the jellyfish body plan

scientific article published on 01 June 2019

Stepwise Evolution of Coral Biomineralization Revealed with Genome-Wide Proteomics and Transcriptomics

scientific article (publication date: 2016)

Telomere shortening in the colonial coral Acropora digitifera during development.

scientific article published in March 2014

The Large Mitochondrial Genome of Symbiodinium minutum Reveals Conserved Noncoding Sequences between Dinoflagellates and Apicomplexans.

scientific article published on 20 July 2015

The Mesoderm-Forming Gene brachyury Regulates Ectoderm-Endoderm Demarcation in the Coral Acropora digitifera

scientific article published on 15 September 2016

The complex NOD-like receptor repertoire of the coral Acropora digitifera includes novel domain combinations.

scientific article published on 30 August 2012

The crown-of-thorns starfish genome as a guide for biocontrol of this coral reef pest

scientific article

The mitochondrial genome sequence of a deep-sea, hydrothermal vent limpet, Lepetodrilus nux, presents a novel vetigastropod gene arrangement.

scientific article

The repertoire of chemical defense genes in the coral Acropora digitifera genome.

scientific article

The transcriptomic response of the coral Acropora digitifera to a competent Symbiodinium strain: the symbiosome as an arrested early phagosome.

scientific article

Transcriptome analysis of the reef-building octocoral, Heliopora coerulea.

scientific article published on 30 May 2018

Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes.

scientific article

Two new species of Rhinogobius (Gobiiformes: Oxudercidae) from Palawan, Philippines, with their phylogenetic placement

scholarly article published in 2021

Unexpectedly complex gradation of coral population structure in the Nansei Islands, Japan

scientific article published on 12 July 2016

Warm seawater temperature promotes substrate colonization by the blue coral, Heliopora coerulea

scientific article published on 27 September 2019