List of works - Yu Lin

A Median Solver and Phylogenetic Inference Based on Double-Cut-and-Join Sorting.

scientific article published on 16 October 2017

A maximum-likelihood approach for building cell-type trees by lifting

scientific article published on 11 January 2016

A new genomic evolutionary model for rearrangements, duplications, and losses that applies across eukaryotes and prokaryotes.

scientific article

An Exact Algorithm to Compute the Double-Cut-and-Join Distance for Genomes with Duplicate Genes

scientific article published on 17 December 2014

Analysis of gene copy number changes in tumor phylogenetics

scientific article

Approximating the edit distance for genomes with duplicate genes under DCJ, insertion and deletion.

scientific article

Assembly of long error-prone reads using de Bruijn graphs

scientific article published on 12 December 2016

Assembly of long, error-prone reads using repeat graphs

scientific article published on 01 April 2019

Bacterial Whole Cell Typing by Mass Spectra Pattern Matching with Bootstrapping Assessment.

scientific article published on 31 October 2017

Bootstrapping phylogenies inferred from rearrangement data.

scientific article

Detection and analysis of ancient segmental duplications in mammalian genomes

scientific article published on 07 May 2018

Direct MALDI-TOF MS Identification of Bacterial Mixtures

scientific article published on 22 August 2018

Fast and accurate phylogenetic reconstruction from high-resolution whole-genome data and a novel robustness estimator.

scientific article

HaploJuice : accurate haplotype assembly from a pool of sequences with known relative concentrations

scientific article published on 22 October 2018

Hurdles and sorting by inversions: combinatorial, statistical, and experimental results.

scientific article published in October 2009

In silico spectral libraries by deep learning facilitate data-independent acquisition proteomics

scientific article published on 09 January 2020

Large-scale 3D chromatin reconstruction from chromosomal contacts

scientific article published on 04 April 2019

MLGO: phylogeny reconstruction and ancestral inference from gene-order data

scientific article (publication date: 8 November 2014)

Morphological stasis masks ecologically divergent coral species on tropical reefs

scientific article published on 02 April 2021

Reconstructing Yeasts Phylogenies and Ancestors from Whole Genome Data

scientific article

Sorting genomes with rearrangements and segmental duplications through trajectory graphs.

scientific article

Study of cell differentiation by phylogenetic analysis using histone modification data

scientific article

What is the difference between the breakpoint graph and the de Bruijn graph?

scientific article

List of works by Yu Lin

A Median Solver and Phylogenetic Inference Based on Double-Cut-and-Join Sorting.

A maximum-likelihood approach for building cell-type trees by lifting

A new genomic evolutionary model for rearrangements, duplications, and losses that applies across eukaryotes and prokaryotes.

An Exact Algorithm to Compute the Double-Cut-and-Join Distance for Genomes with Duplicate Genes

Analysis of gene copy number changes in tumor phylogenetics

Approximating the edit distance for genomes with duplicate genes under DCJ, insertion and deletion.

Assembly of long error-prone reads using de Bruijn graphs

Assembly of long, error-prone reads using repeat graphs

Bacterial Whole Cell Typing by Mass Spectra Pattern Matching with Bootstrapping Assessment.

Bootstrapping phylogenies inferred from rearrangement data.

Detection and analysis of ancient segmental duplications in mammalian genomes

Direct MALDI-TOF MS Identification of Bacterial Mixtures

Fast and accurate phylogenetic reconstruction from high-resolution whole-genome data and a novel robustness estimator.

HaploJuice : accurate haplotype assembly from a pool of sequences with known relative concentrations

Hurdles and sorting by inversions: combinatorial, statistical, and experimental results.

In silico spectral libraries by deep learning facilitate data-independent acquisition proteomics

Large-scale 3D chromatin reconstruction from chromosomal contacts

MLGO: phylogeny reconstruction and ancestral inference from gene-order data

Morphological stasis masks ecologically divergent coral species on tropical reefs

Reconstructing Yeasts Phylogenies and Ancestors from Whole Genome Data

Sorting genomes with rearrangements and segmental duplications through trajectory graphs.

Study of cell differentiation by phylogenetic analysis using histone modification data

What is the difference between the breakpoint graph and the de Bruijn graph?