List of works - Sha Cao

A Bayesian adaptive marker-stratified design for molecularly targeted agents with customized hierarchical modeling

scientific article published on 09 April 2019

A Bayesian adaptive phase I/II clinical trial design with late-onset competing risk outcomes

scientific article published on 31 July 2020

A probabilistic model-based bi-clustering method for single-cell transcriptomic data analysis

Aberrant epigenetic and transcriptional events associated with breast cancer risk

scientific article published on 09 February 2022

Analysis of strand-specific RNA-seq data using machine learning reveals the structures of transcription units in Clostridium thermocellum

scientific article

Aptamer based proteomic pilot study reveals a urine signature indicative of pediatric urinary tract infections

scientific article published on 06 July 2020

Co-expression based cancer staging and application

scientific article published on 30 June 2020

Competition between DNA Methylation, Nucleotide Synthesis, and Antioxidation in Cancer versus Normal Tissues

scientific article

Comprehensive characterization of the genomic alterations in human gastric cancer.

scientific article published on 3 December 2014

Deep learning-based cancer survival prognosis from RNA-seq data: approaches and evaluations

scientific article published on 03 April 2020

Differential co-expression analysis reveals early stage transcriptomic decoupling in alzheimer's disease

scientific article published on 03 April 2020

Genetically programmed alternative splicing of NEMO mediates an autoinflammatory disease phenotype

scientific article published on 01 March 2022

Geometric All-way Boolean Tensor Decomposition ⬇️

scientific article published in November 2020

LTMG (Left truncated mixture Gaussian) based modeling of transcriptional regulatory heterogeneities in single cell RNA-seq data – a perspective from the kinetics of mRNA metabolism

scholarly article published 29 September 2018

LTMG: a novel statistical modeling of transcriptional expression states in single-cell RNA-Seq data

scientific article published on 01 October 2019

Lysine-Specific Demethylase 1 Mediates AKT Activity and Promotes Epithelial-to-Mesenchymal Transition in PIK3CA-Mutant Colorectal Cancer

scientific article published on 08 November 2019

M3S: a comprehensive model selection for multi-modal single-cell RNA sequencing data

scientific article published on 20 December 2019

MAL2 drives immune evasion in breast cancer by suppressing tumor antigen presentation

scientific article published on 29 September 2020

PLUS: Predicting cancer metastasis potential based on positive and unlabeled learning

scientific article published on 29 March 2022

QUBIC2: a novel and robust biclustering algorithm for analyses and interpretation of large-scale RNA-Seq data

scientific article published on 01 February 2020

SSMD: a semi-supervised approach for a robust cell type identification and deconvolution of mouse transcriptomics data

scientific article published on 24 November 2020

TSNP: A two-stage nonparametric phase I/II clinical trial design for immunotherapy

scientific article published on 06 October 2020

The method for breast cancer grade prediction and pathway analysis based on improved multiple kernel learning

scientific article published on 29 November 2016

Upregulation of lipid metabolism genes in the breast prior to cancer diagnosis