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List of works by Donovan H Parks

A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres

scientific article

A catalogue of 136 microbial draft genomes from Red Sea metagenomes.

scientific article

A complete domain-to-species taxonomy for Bacteria and Archaea

scientific article published on 27 April 2020

A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes

scientific article

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

scientific article published on 27 August 2018

A unified catalog of 204,938 reference genomes from the human gut microbiome

scientific article published on 20 July 2020

An evolving view of methane metabolism in the Archaea

scientific article published on 21 January 2019

An expanded genomic representation of the phylum cyanobacteria

scientific article

AnnoTree: visualization and exploration of a functionally annotated microbial tree of life

scientific article published on 01 May 2019

Author Correction: A complete domain-to-species taxonomy for Bacteria and Archaea

scientific article published on 01 September 2020

Author Correction: Roadmap for naming uncultivated Archaea and Bacteria

scientific article published on 12 November 2020

Back from the dead; the curious tale of the predatory cyanobacterium Vampirovibrio chlorellavorus

scientific article published on 21 May 2015

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

scientific article published on 14 May 2015

Chemotaxis may assist marine heterotrophic bacterial diazotrophs to find microzones suitable for N2 fixation in the pelagic ocean

scientific article published in 2022

Classifying short genomic fragments from novel lineages using composition and homology.

scientific article

Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.).

scientific article

Comparative Genomics of Candidate Phylum TM6 Suggests That Parasitism Is Widespread and Ancestral in This Lineage.

scientific article published on 28 November 2015

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

scientific article published in February 2018

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

article

Culture- and metagenomics-enabled analyses of the Methanosphaera genus reveals their monophyletic origin and differentiation according to genome size

article

Erratum: Addendum: Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.).

scientific article published on 18 April 2018

Evaluation of a concatenated protein phylogeny for classification of tailed double-stranded DNA viruses belonging to the order Caudovirales

scientific article published on 20 May 2019

First genomic insights into members of a candidate bacterial phylum responsible for wastewater bulking.

scientific article

GenGIS: A geospatial information system for genomic data.

scientific article

Genome-Based Microbial Taxonomy Coming of Age.

scientific article

Genome-Centric Analysis of Microbial Populations Enriched by Hydraulic Fracture Fluid Additives in a Coal Bed Methane Production Well

scientific article

GroopM: an automated tool for the recovery of population genomes from related metagenomes.

scientific article

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

scientific article

Measuring Community Similarity with Phylogenetic Networks ⬇️

scientific article published on August 21, 2012

Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics.

scientific article

Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota

scientific article

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

scientific article

On the origins of oxygenic photosynthesis and aerobic respiration in Cyanobacteria.

scientific article published in March 2017

Proposal of names for 329 higher rank taxa defined in the Genome Taxonomy Database under two prokaryotic codes

scientific article published in 2023

Rapid identification of high-confidence taxonomic assignments for metagenomic data ⬇️

scientific article published on April 24, 2012

Roadmap for naming uncultivated Archaea and Bacteria

scientific article published on 08 June 2020

STAMP: statistical analysis of taxonomic and functional profiles.

scientific article

SeqCode: a nomenclatural code for prokaryotes described from sequence data

scientific article published in 2022

The importance of designating type material for uncultured taxa

article

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