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List of works by Oliver Eulenstein

Algorithms for genome-scale phylogenetics using gene tree parsimony

scientific article published in July 2013

Algorithms: simultaneous error-correction and rooting for gene tree reconciliation and the gene duplication problem ⬇️

scientific article published on June 25, 2012

An ILP solution for the gene duplication problem ⬇️

scientific article published on February 15, 2011

An Omega(n2/ log n) speed-up of TBR heuristics for the gene-duplication problem

scientific article published in October 2008

Bijective Diameters of Gene Tree Parsimony Costs

scientific article

Computing Manhattan Path-Difference MedianTrees: a Practical Local Search Approach

scientific article

Consensus properties and their large-scale applications for the gene duplication problem

scientific article published on 06 March 2016

Consensus properties for the deep coalescence problem and their application for scalable tree search

scientific article

DrML: probabilistic modeling of gene duplications

scientific article (publication date: 2014)

DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony

scientific article

Efficient Local Search for Euclidean Path-Difference Median Trees

scientific article published on 16 October 2017

Efficient algorithms for knowledge-enhanced supertree and supermatrix phylogenetic problems

scientific article published in November 2013

Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence

scientific article

Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models

scientific article

Exact solutions for species tree inference from discordant gene trees.

scientific article published on 2 October 2013

Exploring biological interaction networks with tailored weighted quasi-bicliques ⬇️

scientific article published on June 25, 2012

Gene Tree Diameter for Deep Coalescence

scientific article published in January 2015

Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees

scientific article (publication date: March 2011)

Groves of Phylogenetic Trees

scholarly article by Cécile Ané et al published 26 June 2009 in Annals of Combinatorics

Guest Editors Introduction to the Special Section on Bioinformatics Research and Applications

scientific article published on 01 May 2014

Guest editors' introduction to the Proceedings of the 9th International Symposium on Biomedical Research and Applications

scientific article published on 13 November 2014

Highly Bi-Connected Subgraphs for Computational Protein Function Annotation

Identifying optimal incomplete phylogenetic data sets from sequence databases

scientific article

Improved heuristics for minimum-flip supertree construction.

scientific article published on January 2006

Inferring Evolutionary Scenarios for Protein Domain Compositions

article

Inferring species trees from gene duplication episodes

article

Maximizing Deep Coalescence Cost

scientific article published in January 2014

Maximum likelihood models and algorithms for gene tree evolution with duplications and losses.

scientific article

Minimum-flip supertrees: complexity and algorithms

scientific article

Mining Biological Interaction Networks Using Weighted Quasi-Bicliques

Obtaining maximal concatenated phylogenetic data sets from large sequence databases

scientific article

Performance of flip supertree construction with a heuristic algorithm

scientific article published in April 2004

Refining discordant gene trees

scientific article

Robinson-Foulds Supertrees

scientific article (publication date: 24 February 2010)

Synthesizing large-scale species trees using the strict consensus approach

scientific article published on 20 April 2017

The gene-duplication problem: near-linear time algorithms for NNI-based local searches

scientific article published in April 2009

The multiple gene duplication problem revisited

scientific article published on July 2008

The plexus model for the inference of ancestral multidomain proteins.

scientific article

The shape of supertrees to come: tree shape related properties of fourteen supertree methods

scientific article published in June 2005

Tracing the Ancestry of Operons in Bacteria

Triplet supertree heuristics for the tree of life

scientific article

Unconstrained Diameters for Deep Coalescence

scientific article published on 11 February 2016

Unrooted Tree Reconciliation: A Unified Approach ⬇️

scientific article published on March 1, 2013

iGTP: a software package for large-scale gene tree parsimony analysis

scientific article

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