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List of works by Robert Küffner

A Turing test for artificial expression data

scientific article

A comprehensive gene regulatory network for the diauxic shift in Saccharomyces cerevisiae

scientific article published on 19 July 2013

Addressing false discoveries in network inference

scientific article published on 24 April 2015

Crowdsourced analysis of clinical trial data to predict amyotrophic lateral sclerosis progression

scientific article

Detection of network motifs using three-way ANOVA

scientific article published in PLoS ONE

Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts

scientific article published on September 2005

From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems ⬇️

scientific article

Inferring gene regulatory networks by ANOVA.

scientific article published on 30 March 2012

MIRTFnet: analysis of miRNA regulated transcription factors

scientific article

Microarray analyses of transdifferentiated mesenchymal stem cells

scientific article published in February 2008

Normalization and gene p-value estimation: issues in microarray data processing

scientific article

On protocols and measures for the validation of supervised methods for the inference of biological networks

scientific article published on 03 December 2013

Petri Nets with Fuzzy Logic (PNFL): reverse engineering and parametrization

scientific article

Physiology of Geobacter metallireducens under excess and limitation of electron donors. Part I. Batch cultivation with excess of carbon sources

scientific article published on 14 April 2014

Physiology of Geobacter metallireducens under excess and limitation of electron donors. Part II. Mimicking environmental conditions during cultivation in retentostats

scientific article published on 13 April 2014

ProSAS: a database for analyzing alternative splicing in the context of protein structures

scientific article

Refining ensembles of predicted gene regulatory networks based on characteristic interaction sets

scientific article published on 3 February 2014

RelEx--relation extraction using dependency parse trees ⬇️

scientific article published in December 2006

Reliable gene signatures for microarray classification: assessment of stability and performance

scientific article published on 31 July 2006

Rigorous assessment of gene set enrichment tests

scientific article published on 5 April 2012

Wisdom of crowds for robust gene network inference ⬇️

scientific article published on July 15, 2012

miRSel: automated extraction of associations between microRNAs and genes from the biomedical literature

scientific article

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