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List of works by Ruijia Wang

A Genome-Wide Association Study Identifies Multiple Regions Associated with Head Size in Catfish

scientific article published on 24 August 2016

A compendium of conserved cleavage and polyadenylation events in mammalian genes

scientific article published on 24 August 2018

A genome-wide association study in catfish reveals the presence of functional hubs of related genes within QTLs for columnaris disease resistance

scientific article

Alternative polyadenylation dysregulation contributes to the differentiation block of acute myeloid leukemia

scientific article published on 20 January 2022

Analysis of 52 Rab GTPases from channel catfish and their involvement in immune responses after bacterial infections

scientific article published on 7 February 2014

Analysis of Duplicated Genes and Multi-Gene Families

scientific article published on 3 February 2017

Analysis of Long Non-coding RNAs

scientific article published on 3 February 2017

Bioinformatics Considerations and Approaches for High-Density Linkage Mapping in Aquaculture

scientific article published on 3 February 2017

Bulk segregant RNA-seq reveals expression and positional candidate genes and allele-specific expression for disease resistance against enteric septicemia of catfish

scientific article

Cellular stress alters 3'UTR landscape through alternative polyadenylation and isoform-specific degradation.

scientific article published on 11 June 2018

Channel catfish hemoglobin genes: identification, phylogenetic and syntenic analysis, and specific induction in response to heat stress

scientific article published on 28 November 2013

Characterizations and expression analyses of NF-κB and Rel genes in the Yesso scallop (Patinopecten yessoensis) suggest specific response patterns against Gram-negative infection in bivalves.

scientific article published on April 2015

Construction of a High-Density Genetic Map and Quantitative Trait Locus Mapping in the Sea Cucumber Apostichopus japonicus

scientific article

Construction of a high-density, high-resolution genetic map and its integration with BAC-based physical map in channel catfish

scientific article

Evasion of mucosal defenses during Aeromonas hydrophila infection of channel catfish (Ictalurus punctatus) skin

scientific article published on 05 December 2012

Expression of nitric oxide synthase (NOS) genes in channel catfish is highly regulated and time dependent after bacterial challenges

scientific article published on 18 February 2014

FIP1L1 Regulates Alternative Polyadenylation of Leukemia-Associated Genes in Acute Myeloid Leukemia

scientific article published on 29 November 2018

Four lysozymes (one c-type and three g-type) in catfish are drastically but differentially induced after bacterial infection

scientific article published on 29 April 2013

Genetic Analysis Using RNA-Seq: Bulk Segregant RNA-Seq

scientific article published on 3 February 2017

Genome Annotation: Determination of the Coding Potential of the Genome

scientific article published on 3 February 2017

Genome-wide identification and characterization of TRAF genes in the Yesso scallop (Patinopecten yessoensis) and their distinct expression patterns in response to bacterial challenge.

scientific article

Genome-wide identification and characterization of five MyD88 duplication genes in Yesso scallop (Patinopecten yessoensis) and expression changes in response to bacterial challenge

scientific article

Genome-wide identification, characterization and expression analyses of two TNFRs in Yesso scallop (Patinopecten yessoensis) provide insight into the disparity of responses to bacterial infections and heat stress in bivalves

scientific article published on 14 March 2016

HD-Marker: a highly multiplexed and flexible approach for targeted genotyping of over 10,000 genes in a single-tube assay

article

Identification and analysis of genome-wide SNPs provide insight into signatures of selection and domestication in channel catfish (Ictalurus punctatus).

scientific article

Identification, characterization and expression profiling of the Tollip gene in Yesso scallop (Patinopecten yessoensis).

scientific article published on January 2015

Long Non-Coding RNAs (lncRNAs) of Sea Cucumber: Large-Scale Prediction, Expression Profiling, Non-Coding Network Construction, and lncRNA-microRNA-Gene Interaction Analysis of lncRNAs in Apostichopus japonicus and Holothuria glaberrima During LPS Ch

scientific article published on 09 July 2016

Pathogen recognition receptors in channel catfish: IV. Identification, phylogeny and expression analysis of peptidoglycan recognition proteins

scientific article published on 9 May 2014

PolyA_DB 3 catalogs cleavage and polyadenylation sites identified by deep sequencing in multiple genomes

scientific article published on 23 October 2017

RNA-seq analysis of mucosal immune responses reveals signatures of intestinal barrier disruption and pathogen entry following Edwardsiella ictaluri infection in channel catfish, Ictalurus punctatus

scientific article

Rapid development of molecular resources for a freshwater mussel, Villosa lienosa (Bivalvia:Unionidae), using an RNA-seq-based approach

scientific article published in September 2012

Regulation of Intronic Polyadenylation by PCF11 Impacts mRNA Expression of Long Genes

article

Ribosomal protein genes are highly enriched among genes with allele-specific expression in the interspecific F1 hybrid catfish

scientific article published on 08 January 2016

Scallop genome provides insights into evolution of bilaterian karyotype and development

scientific article published on 03 April 2017

Sea cucumber genome provides insights into saponin biosynthesis and aestivation regulation.

scientific article

The Rho GTPase Family Genes in Bivalvia Genomes: Sequence, Evolution and Expression Analysis

scientific article published on 3 December 2015

The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts

scientific article

The cytochrome P450 genes of channel catfish: their involvement in disease defense responses as revealed by meta-analysis of RNA-Seq data sets

scientific article

The genome-wide identification of mitogen-activated protein kinase kinase (MKK) genes in Yesso scallop Patinopecten yessoensis and their expression responses to bacteria challenges

scientific article

The mRNA Export Receptor NXF1 Coordinates Transcriptional Dynamics, Alternative Polyadenylation, and mRNA Export

scientific article published on 25 February 2019

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