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List of works by Marc Vaudel

A Simple Workflow for Large Scale Shotgun Glycoproteomics.

scientific article published on January 2016

A complex standard for protein identification, designed by evolution.

scientific article published on 13 September 2012

A de novo Ser111Thr variant in aquaporin-4 in a patient with intellectual disability, transient signs of brain ischemia, transient cardiac hypertrophy, and progressive gait disturbance.

scientific article published in February 2018

A proteomics sample metadata representation for multiomics integration and big data analysis

scientific article published in 2021

A trans-ancestral meta-analysis of genome-wide association studies reveals loci associated with childhood obesity

scientific article published on 01 October 2019

An Accessible Proteogenomics Informatics Resource for Cancer Researchers

scientific article published on November 2017

Analyzing the Structure of Pathways and Its Influence on the Interpretation of Biomedical Proteomics Data Sets

scientific article published on 24 October 2018

BioContainers: An open-source and community-driven framework for software standardization

scientific article

Bioinformatics for proteomics: opportunities at the interface between the scientists, their experiments, and the community

scientific article published on 01 January 2014

Carboxyl-ester lipase maturity-onset diabetes of the young disease protein biomarkers in secretin-stimulated duodenal juice

scientific article published on 04 November 2014

D-score: a search engine independent MD-score.

scientific article published on 15 February 2013

DeNovoGUI: an open source graphical user interface for de novo sequencing of tandem mass spectra.

scientific article published on 7 January 2014

Distinct protein signature of hypertension-induced damage in the renal proteome of the two-kidney, one-clip rat model.

scientific article published in January 2015

Effect of disease-associated SLC9A9 mutations on protein-protein interaction networks: implications for molecular mechanisms for ADHD and autism

scientific article published on 29 March 2019

Freezing effects on the acute myeloid leukemia cell proteome and phosphoproteome revealed using optimal quantitative workflows

scientific article published on 20 April 2016

GWAS for autoimmune Addison's disease identifies multiple risk loci and highlights AIRE in disease susceptibility

scientific article published on 11 February 2021

Genome-wide association study reveals dynamic role of genetic variation in infant and early childhood growth

scientific article published on 01 October 2019

Integral Quantification Accuracy Estimation for Reporter Ion-based Quantitative Proteomics (iQuARI)

scientific article published on 30 August 2012

Interpretation of Quantitative Shotgun Proteomic Data.

scientific article

Introducing M-GCTA a Software Package to Estimate Maternal (or Paternal) Genetic Effects on Offspring Phenotypes

scientific article published on 06 September 2019

Label-free analysis of human cerebrospinal fluid addressing various normalization strategies and revealing protein groups affected by multiple sclerosis.

scientific article published on 3 February 2016

Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors

Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors

scientific article published on 01 May 2019

Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits

scientific article published on 12 October 2020

PDV: an integrative proteomics data viewer

scientific article published on 01 April 2019

PathwayMatcher: proteoform-centric network construction enables fine-granularity multiomics pathway mapping

scientific article published on 01 August 2019

Peptide and protein quantification: a map of the minefield.

scientific article published on February 2010

Peptide identification quality control

scientific article published on 18 April 2011

PeptideMapper: Efficient and Versatile Amino Acid Sequence and Tag Mapping

scientific article

PeptideShaker Online: A User-Friendly Web-Based Framework for the Identification of Mass Spectrometry-Based Proteomics Data

publication published on 28 October 2021

PeptideShaker enables reanalysis of MS-derived proteomics data sets.

scientific article published in January 2015

Performance of super-SILAC based quantitative proteomics for comparison of different acute myeloid leukemia (AML) cell lines.

scientific article published on 08 August 2014

Pladipus Enables Universal Distributed Computing in Proteomics Bioinformatics.

scientific article published on 29 October 2015

Practical Considerations for Omics Experiments in Biomedical Sciences.

scientific article published on 16 August 2015

Reliable FASP-based procedures for optimal quantitative proteomic and phosphoproteomic analysis on samples from acute myeloid leukemia patients.

scientific article published on 21 June 2016

Reprogrammed Cells Display Distinct Proteomic Signatures Associated with Colony Morphology Variability

scientific article published on 18 November 2019

SearchGUI: A Highly Adaptable Common Interface for Proteomics Search and de Novo Engines

scientific article published on 25 May 2018

SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches.

scientific article published on 31 January 2011

Shedding light on black boxes in protein identification

scientific article

Software engineering for scientific big data analysis

scientific article published on 01 May 2019

Systemic Analysis of Regulated Functional Networks.

scientific article published on January 2016

The mzIdentML data standard version 1.2, supporting advances in proteome informatics.

scientific article

Time-resolved characterization of cAMP/PKA-dependent signaling reveals that platelet inhibition is a concerted process involving multiple signaling pathways.

scientific article

Using Proteomics Bioinformatics Tools and Resources in Proteogenomic Studies.

scientific article

compomics-utilities: an open-source Java library for computational proteomics

scientific article

iTRAQ data interpretation.

scientific article

iTRAQ protein quantification: A quality-controlled workflow

scientific article published on 16 February 2011

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