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List of works by Ernesto Pérez-Rueda

A comparative genome analysis of the RpoS sigmulon shows a high diversity of responses and origins.

scientific article

A functional and phylogenetic comparison of quorum sensing related genes in Brucella melitensis 16M.

scientific article published on 4 July 2014

Biochemical characterization of recombinant L-asparaginase (AnsA) from Rhizobium etli, a member of an increasing rhizobial-type family of L-asparaginases.

scientific article published in March 2012

Characterization and distribution of GHRH, PACAP, TRH, SST and IGF1 mRNAs in the green iguana.

scientific article published on 30 September 2017

Characterization of pituitary growth hormone and its receptor in the green iguana (Iguana iguana).

scientific article published on 24 April 2014

Coiled-coil domains enhance the membrane association of Salmonella type III effectors.

scientific article

Comparative genomics of nucleotide metabolism: a tour to the past of the three cellular domains of life.

scientific article

Comparison of Metabolic Pathways in Escherichia coli by Using Genetic Algorithms.

scientific article published on 9 April 2015

Deciphering the functional diversity of DNA-binding transcription factors in Bacteria and Archaea organisms

scientific article published on 21 August 2020

Dissecting the Repertoire of DNA-Binding Transcription Factors of the Archaeon Pyrococcus furiosus DSM 3638

scientific article published on 21 September 2018

Dissecting the protein architecture of DNA-binding transcription factors in bacteria and archaea.

scientific article published on 4 August 2017

Distribution of putative xenogeneic silencers in prokaryote genomes

scientific article published on 23 July 2015

Diversity and distribution of transcription factors: their partner domains play an important role in regulatory plasticity in bacteria

scientific article published on 02 June 2011

Electrostatic analysis of bacterial expansins.

scientific article published on 28 November 2014

Evaluation of the Abundance of DNA-Binding Transcription Factors in Prokaryotes

scientific article published on 03 January 2020

Functional Prediction of Hypothetical Transcription Factors of Escherichia coli K-12 Based on Expression Data.

scientific article

Further characterization of functional domains of PerA, role of amino and carboxy terminal domains in DNA binding.

scientific article

Genome misclassification of Klebsiella variicola and Klebsiella quasipneumoniae isolated from plants, animals and humans.

scientific article published in January 2018

Hybrid approaches for the detection of networks of critical residues involved in functional motions in protein families.

scientific article published on 13 February 2015

Identification and in silico characterization of two novel genes encoding peptidases S8 found by functional screening in a metagenomic library of Yucatán underground water

scientific article

Identification of DNA Methyltransferase Genes in Human Pathogenic Bacteria by Comparative Genomics

scientific article published on 31 December 2015

Identification of L-asparaginases from Streptomyces strains with competitive activity and immunogenic profiles: a bioinformatic approach

scientific article published on 13 November 2020

Identification of beta-Lactamases and beta-Lactam-Related Proteins in Human Pathogenic Bacteria using a Computational Search Approach.

scientific article published on 16 May 2017

Identification of functional motions in the adenylate kinase (ADK) protein family by computational hybrid approaches.

scientific article

Identification of functional signatures in the metabolism of the three cellular domains of life.

scientific article published on 28 May 2019

Identification of volatile compounds produced by the bacterium Burkholderia tropica that inhibit the growth of fungal pathogens. ⬇️

scientific article published on 2 July 2013

Increments and duplication events of enzymes and transcription factors influence metabolic and regulatory diversity in prokaryotes.

scientific article

Intermediate-Salinity Systems at High Altitudes in the Peruvian Andes Unveil a High Diversity and Abundance of Bacteria and Viruses

scientific article published on 05 November 2019

Lessons from the modular organization of the transcriptional regulatory network of Bacillus subtilis.

scientific article

Main functions and taxonomic distribution of virulence genes in Brucella melitensis 16 M

scientific article

New insights into the regulatory networks of paralogous genes in bacteria.

scientific article published on 22 October 2009

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond.

scientific article

Rhizobium etli asparaginase II: an alternative for acute lymphoblastic leukemia (ALL) treatment.

scientific article published on 16 August 2012

The Microbial Composition in Circumneutral Thermal Springs from Chignahuapan, Puebla, Mexico Reveals the Presence of Particular Sulfur-Oxidizing Bacterial and Viral Communities

scientific article published on 29 October 2020

The alignment of enzymatic steps reveals similar metabolic pathways and probable recruitment events in Gammaproteobacteria

scientific article published on 17 November 2015

The functional landscape bound to the transcription factors of Escherichia coli K-12.

scientific article published on 6 June 2015

The lifestyle of prokaryotic organisms influences the repertoire of promiscuous enzymes.

scientific article

The protein architecture in Bacteria and Archaea identifies a set of promiscuous and ancient domains

scientific article published on 19 December 2019

The repertoire of DNA-binding transcription factors in prokaryotes: functional and evolutionary lessons.

scientific article published on January 2012

The transcriptional activator of the bfp operon in EPEC (PerA) interacts with the RNA polymerase alpha subunit

scientific article published on 20 April 2021

Towards the complete proteinaceous regulome of Acinetobacter baumannii.

scientific article published on 23 March 2017

Tracing the Repertoire of Promiscuous Enzymes along the Metabolic Pathways in Archaeal Organisms

scientific article published on 13 July 2017

Tracing the phylogenetic history of the Crl regulon through the Bacteria and Archaea genomes

scientific article published on 16 April 2019

Transcription factors in Escherichia coli prefer the holo conformation

scientific article

Transcriptomic analysis of the process of biofilm formation in Rhizobium etli CFN42.

scientific article published on 25 May 2016

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