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List of works by Ilka Hoof

A promoter-level mammalian expression atlas

scientific article

A shared MHC supertype motif emerges by convergent evolution in macaques and mice, but is totally absent in human MHC molecules

scientific article

An atlas of active enhancers across human cell types and tissues

scientific article

CD8+ TCR Repertoire Formation Is Guided Primarily by the Peptide Component of the Antigenic Complex

scientific article published on 24 December 2012

Comprehensive Analysis of the Naturally Processed Peptide Repertoire: Differences between HLA-A and B in the Immunopeptidome

scientific article

Diverse and highly cross-reactive T-cell responses in ragweed allergic patients independent of geographical region

scientific article published on 21 August 2019

Estimating the fitness cost of escape from HLA presentation in HIV-1 protease and reverse transcriptase.

scientific article

Functional analysis of frequently expressed Chinese rhesus macaque MHC class I molecules Mamu-A1*02601 and Mamu-B*08301 reveals HLA-A2 and HLA-A3 supertypic specificities

scientific article

HLA Preferences for Conserved Epitopes: A Potential Mechanism for Hepatitis C Clearance.

scientific article

HLA class I allele promiscuity revisited ⬇️

scientific article published on June 22, 2011

Identification of CD8+ T cell epitopes in the West Nile virus polyprotein by reverse-immunology using NetCTL.

scientific article

Identification of TNF-α-responsive promoters and enhancers in the intestinal epithelial cell model Caco-2.

scientific article

Immunoproteomic analysis of house dust mite antigens reveals distinct classes of dominant T cell antigens according to function and serological reactivity

scientific article published on 29 September 2016

Interdisciplinary analysis of HIV-specific CD8+ T cell responses against variant epitopes reveals restricted TCR promiscuity.

scientific article published on 2 April 2010

MHC motif viewer

scientific article published on 3 September 2008

NetMHCpan, a method for MHC class I binding prediction beyond humans

scientific article published on 12 November 2008

Peptide-binding motifs associated with MHC molecules common in Chinese rhesus macaques are analogous to those of human HLA supertypes and include HLA-B27-like alleles

scientific article

Proteome sampling by the HLA class I antigen processing pathway

scientific article

SigniSite: Identification of residue-level genotype-phenotype correlations in protein multiple sequence alignments ⬇️

scientific article published on June 12, 2013

State of the art and challenges in sequence based T-cell epitope prediction

scientific article

The immune epitope database 2.0.

scientific article

The most common Chinese rhesus macaque MHC class I molecule shares peptide binding repertoire with the HLA-B7 supertype

scientific article

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