List of works - Ariel Rokem

2015 Brainhack Proceedings

scientific article

A Major Human White Matter Pathway Between Dorsal and Ventral Visual Cortex.

scientific article

A browser-based tool for visualization and analysis of diffusion MRI data

scientific article published on 5 March 2018

A model of encoding and decoding in V1 and MT accounts for motion perception anisotropies in the human visual system

scientific article published on 30 July 2009

A model of ganglion axon pathways accounts for percepts elicited by retinal implants

scientific article published on 24 June 2019

A short course about fitting models with the scipy.optimize module

scientific article published in 2018

A two-stage cascade model of BOLD responses in human visual cortex

scientific article

Applying microstructural models to understand the role of white matter in cognitive development

scientific article published on 01 February 2019

Brainhack: a collaborative workshop for the open neuroscience community

scientific article

Broader visual orientation tuning in patients with schizophrenia

scientific article

Bundle analytics, a computational framework for investigating the shapes and profiles of brain pathways across populations

scientific article published on 13 October 2020

Burst firing is a neural code in an insect auditory system

scientific article

Bursts generate a non-reducible spike-pattern code

scientific article

Cholinergic Enhancement Augments Magnitude and Specificity of Visual Perceptual Learning in Healthy Humans ⬇️

scientific article published on September 16, 2010

Cholinergic enhancement increases the effects of voluntary attention but does not affect involuntary attention

scientific article

Cholinergic enhancement reduces orientation-specific surround suppression but not visual crowding.

scientific article

Combining Citizen Science and Deep Learning to Amplify Expertise in Neuroimaging

scholarly article by Anisha Keshavan et al published 8 May 2019 in Frontiers in Neuroinformatics

Confidence Intervals for Random Forests in Python

scientific article published on 09 November 2017

Correction: Evaluating the Accuracy of Diffusion MRI Models in White Matter

scientific article published on 22 September 2015

Deconvolution of High Dimensional Mixtures via Boosting, with Application to Diffusion-Weighted MRI of Human Brain ⬇️

scientific article published on January 2014

Deep-learning based, automated segmentation of macular edema in optical coherence tomography

scientific article

Diffusion MRI microstructure models with in vivo human brain Connectome data: results from a multi-group comparison.

scientific article

Diffusional Kurtosis Imaging in the Diffusion Imaging in Python Project

Dipy, a library for the analysis of diffusion MRI data

scientific article

Evaluating arcuate fasciculus laterality measurements across dataset and tractography pipelines

scientific article published on 20 May 2019

Evaluating quantitative proton-density-mapping methods.

scientific article

Evaluating the Reliability of Human Brain White Matter Tractometry

scientific article published on 17 November 2021

Evaluating the accuracy of diffusion MRI models in white matter

scientific article published on 16 April 2015

Evaluation and statistical inference for human connectomes.

scientific article

Fractional ridge regression: a fast, interpretable reparameterization of ridge regression

scientific article published on 01 November 2020

Fully automated, deep learning segmentation of oxygen-induced retinopathy images

scientific article

GABA concentration is reduced in visual cortex in schizophrenia and correlates with orientation-specific surround suppression

scientific article

GLMdenoise: a fast, automated technique for denoising task-based fMRI data

scientific article

Generalized diffusion spectrum magnetic resonance imaging (GDSI) for model-free reconstruction of the ensemble average propagator

scientific article published on 23 January 2019

Giving software its due through community-driven review and publication

Groupyr: Sparse Group Lasso in Python

scientific article published on 24 February 2021

Hack weeks as a model for data science education and collaboration

article published in the Proceedings of the National Academy of Sciences of the United States of America

Human blindsight is mediated by an intact geniculo-extrastriate pathway

scientific article

Human white matter myelinates faster in utero than ex utero

scientific article published in 2023

Interactions of cognitive and auditory abilities in congenitally blind individuals.

scientific article

Journal of Open Source Software (JOSS): design and first-year review

scientific article published on 12 February 2018

Learning to see again: biological constraints on cortical plasticity and the implications for sight restoration technologies.

scientific article published on 14 June 2017

Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework

scientific article published on 18 December 2017

Modulation of inhibition of return by the dopamine D2 receptor agonist bromocriptine depends on individual DAT1 genotype

scientific article published on 28 July 2011

Multidimensional analysis and detection of informative features in human brain white matter

scientific article

Q-space truncation and sampling in diffusion spectrum imaging

scientific article

Rapid and widespread white matter plasticity during an intensive reading intervention.

scientific article

Regularized Regression: A New Tool for Investigating and Predicting Tree Growth

scientific article published on 20 September 2021

Reply

Sex differences in sleep-dependent perceptual learning

scientific article

Slow Endogenous Fluctuations in Cortical fMRI Signals Correlate with Reduced Performance in a Visual Detection Task and Are Suppressed by Spatial Attention

scientific article published on 27 September 2019

Spike-timing precision underlies the coding efficiency of auditory receptor neurons

scientific article published on 14 December 2005

The Brain Imaging Data Structure: a standard for organizing and describing outputs of neuroimaging experiments

article

The benefits of cholinergic enhancement during perceptual learning are long-lasting

scientific article published on 29 May 2013

The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments

scientific article, 2016

The vertical occipital fasciculus: a century of controversy resolved by in vivo measurements.

scientific article

The visual white matter: The application of diffusion MRI and fiber tractography to vision science

scientific article

Windows to the soul: vision science as a tool for studying biological mechanisms of information processing deficits in schizophrenia

scientific article

diff_classifier: Parallelization of multi-particle tracking video analyses

scientific article published on 10 April 2019

popeye: a population receptive field estimation tool

scientific article published on 01 December 2016

List of works by Ariel Rokem

2015 Brainhack Proceedings

A Major Human White Matter Pathway Between Dorsal and Ventral Visual Cortex.

A browser-based tool for visualization and analysis of diffusion MRI data

A model of encoding and decoding in V1 and MT accounts for motion perception anisotropies in the human visual system

A model of ganglion axon pathways accounts for percepts elicited by retinal implants

A short course about fitting models with the scipy.optimize module

A two-stage cascade model of BOLD responses in human visual cortex

Applying microstructural models to understand the role of white matter in cognitive development

Brainhack: a collaborative workshop for the open neuroscience community

Broader visual orientation tuning in patients with schizophrenia

Bundle analytics, a computational framework for investigating the shapes and profiles of brain pathways across populations

Burst firing is a neural code in an insect auditory system

Bursts generate a non-reducible spike-pattern code

Cholinergic Enhancement Augments Magnitude and Specificity of Visual Perceptual Learning in Healthy Humans ⬇️

Cholinergic enhancement increases the effects of voluntary attention but does not affect involuntary attention

Cholinergic enhancement reduces orientation-specific surround suppression but not visual crowding.

Combining Citizen Science and Deep Learning to Amplify Expertise in Neuroimaging

Confidence Intervals for Random Forests in Python

Correction: Evaluating the Accuracy of Diffusion MRI Models in White Matter

Deconvolution of High Dimensional Mixtures via Boosting, with Application to Diffusion-Weighted MRI of Human Brain ⬇️

Deep-learning based, automated segmentation of macular edema in optical coherence tomography

Diffusion MRI microstructure models with in vivo human brain Connectome data: results from a multi-group comparison.

Diffusional Kurtosis Imaging in the Diffusion Imaging in Python Project

Dipy, a library for the analysis of diffusion MRI data

Evaluating arcuate fasciculus laterality measurements across dataset and tractography pipelines

Evaluating quantitative proton-density-mapping methods.

Evaluating the Reliability of Human Brain White Matter Tractometry

Evaluating the accuracy of diffusion MRI models in white matter

Evaluation and statistical inference for human connectomes.

Fractional ridge regression: a fast, interpretable reparameterization of ridge regression

Fully automated, deep learning segmentation of oxygen-induced retinopathy images

GABA concentration is reduced in visual cortex in schizophrenia and correlates with orientation-specific surround suppression

GLMdenoise: a fast, automated technique for denoising task-based fMRI data

Generalized diffusion spectrum magnetic resonance imaging (GDSI) for model-free reconstruction of the ensemble average propagator

Giving software its due through community-driven review and publication

Groupyr: Sparse Group Lasso in Python

Hack weeks as a model for data science education and collaboration

Human blindsight is mediated by an intact geniculo-extrastriate pathway

Human white matter myelinates faster in utero than ex utero

Interactions of cognitive and auditory abilities in congenitally blind individuals.

Journal of Open Source Software (JOSS): design and first-year review

Learning to see again: biological constraints on cortical plasticity and the implications for sight restoration technologies.

Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework

Modulation of inhibition of return by the dopamine D2 receptor agonist bromocriptine depends on individual DAT1 genotype

Multidimensional analysis and detection of informative features in human brain white matter

Q-space truncation and sampling in diffusion spectrum imaging

Rapid and widespread white matter plasticity during an intensive reading intervention.

Regularized Regression: A New Tool for Investigating and Predicting Tree Growth

Reply

Sex differences in sleep-dependent perceptual learning

Slow Endogenous Fluctuations in Cortical fMRI Signals Correlate with Reduced Performance in a Visual Detection Task and Are Suppressed by Spatial Attention

Spike-timing precision underlies the coding efficiency of auditory receptor neurons

The Brain Imaging Data Structure: a standard for organizing and describing outputs of neuroimaging experiments

The benefits of cholinergic enhancement during perceptual learning are long-lasting

The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments

The vertical occipital fasciculus: a century of controversy resolved by in vivo measurements.

The visual white matter: The application of diffusion MRI and fiber tractography to vision science

Windows to the soul: vision science as a tool for studying biological mechanisms of information processing deficits in schizophrenia

diff_classifier: Parallelization of multi-particle tracking video analyses

popeye: a population receptive field estimation tool