List of works - Marieke L Kuijjer

Alternate splicing of the p53 inhibitor HDMX offers a superior prognostic biomarker than p53 mutation in human cancer.

scientific article

An online notebook resource for reproducible inference, analysis and publication of gene regulatory networks

scientific article published in 2022

Correction: Gene Regulatory Network Analysis Identifies Sex-Linked Differences in Colon Cancer Drug Metabolism

scientific article published on 01 April 2019

Cross-species genomic landscape comparison of human mucosal melanoma with canine oral and equine melanoma

scientific article published in Nature Communications

Discovery of novel candidates for anti-liposarcoma therapies by medium-scale high-throughput drug screening

scientific article published on 10 March 2021

Expression of the immune regulation antigen CD70 in osteosarcoma

scientific article

GRAND: a database of gene regulatory network models across human conditions

scientific article published on 08 September 2021

Genome-wide analyses on high-grade osteosarcoma: making sense of a genomically most unstable tumor.

scientific article published on 16 March 2013

Identification of Key Tissue-Specific, Biological Processes by Integrating Enhancer Information in Maize Gene Regulatory Networks

scientific article published on 01 January 2020

Identification of osteosarcoma driver genes by integrative analysis of copy number and gene expression data.

scientific article

Immune response to RB1-regulated senescence limits radiation-induced osteosarcoma formation

scientific article

Interleukin-6 receptor and its ligand interleukin-6 are opposite markers for survival and infiltration with mature myeloid cells in ovarian cancer.

scientific article

Kinome and mRNA expression profiling of high-grade osteosarcoma cell lines implies Akt signaling as possible target for therapy.

scientific article

MEK inhibition induces apoptosis in osteosarcoma cells with constitutive ERK1/2 phosphorylation.

scientific article

Machine learning analysis of gene expression data reveals novel diagnostic and prognostic biomarkers and identifies therapeutic targets for soft tissue sarcomas

article

Mesenchymal stromal cells of osteosarcoma patients do not show evidence of neoplastic changes during long-term culture.

scientific article published on 23 June 2015

PUMA: PANDA Using MicroRNA Associations

scientific article published on 17 June 2020

Predicting Cancer Evolution Using Cell State Dynamics

scientific article published on 01 August 2020

PyPanda: a Python package for gene regulatory network reconstruction ⬇️

scientific article

Regulatory Network of PD1 Signaling Is Associated with Prognosis in Glioblastoma Multiforme

scientific article published on 07 September 2021

The activities of Smad and Gli mediated signalling pathways in high-grade conventional osteosarcoma.

scientific article

lionessR: single sample network inference in R

scientific article published on 25 October 2019

List of works by Marieke L Kuijjer

Alternate splicing of the p53 inhibitor HDMX offers a superior prognostic biomarker than p53 mutation in human cancer.

An online notebook resource for reproducible inference, analysis and publication of gene regulatory networks

Correction: Gene Regulatory Network Analysis Identifies Sex-Linked Differences in Colon Cancer Drug Metabolism

Cross-species genomic landscape comparison of human mucosal melanoma with canine oral and equine melanoma

Discovery of novel candidates for anti-liposarcoma therapies by medium-scale high-throughput drug screening

Expression of the immune regulation antigen CD70 in osteosarcoma

GRAND: a database of gene regulatory network models across human conditions

Genome-wide analyses on high-grade osteosarcoma: making sense of a genomically most unstable tumor.

Identification of Key Tissue-Specific, Biological Processes by Integrating Enhancer Information in Maize Gene Regulatory Networks

Identification of osteosarcoma driver genes by integrative analysis of copy number and gene expression data.

Immune response to RB1-regulated senescence limits radiation-induced osteosarcoma formation

Interleukin-6 receptor and its ligand interleukin-6 are opposite markers for survival and infiltration with mature myeloid cells in ovarian cancer.

Kinome and mRNA expression profiling of high-grade osteosarcoma cell lines implies Akt signaling as possible target for therapy.

MEK inhibition induces apoptosis in osteosarcoma cells with constitutive ERK1/2 phosphorylation.

Machine learning analysis of gene expression data reveals novel diagnostic and prognostic biomarkers and identifies therapeutic targets for soft tissue sarcomas

Mesenchymal stromal cells of osteosarcoma patients do not show evidence of neoplastic changes during long-term culture.

PUMA: PANDA Using MicroRNA Associations

Predicting Cancer Evolution Using Cell State Dynamics

PyPanda: a Python package for gene regulatory network reconstruction ⬇️

Regulatory Network of PD1 Signaling Is Associated with Prognosis in Glioblastoma Multiforme

The activities of Smad and Gli mediated signalling pathways in high-grade conventional osteosarcoma.

lionessR: single sample network inference in R