Search filters

List of works by Vojtěch Mlýnský

Automatic Learning of Hydrogen-Bond Fixes in the AMBER RNA Force Field

scientific article published on 14 June 2022

Correction to "Improving the Performance of the Amber RNA Force Field by Tuning the Hydrogen-Bonding Interactions"

scientific article published on 19 December 2019

Exploring RNA structure and dynamics through enhanced sampling simulations

scientific article published on 29 January 2018

Improving the Performance of the Amber RNA Force Field by Tuning the Hydrogen-Bonding Interactions

scientific article published on 02 April 2019

Mapping the Chemical Space of the RNA Cleavage and Its Implications for Ribozyme Catalysis.

scientific article published on 8 November 2017

Molecular Dynamics Simulations Reveal an Interplay between SHAPE Reagent Binding and RNA Flexibility

scientific article published on 21 December 2017

The role of an active site Mg(2+) in HDV ribozyme self-cleavage: insights from QM/MM calculations.

scientific article

Toward Convergence in Folding Simulations of RNA Tetraloops: Comparison of Enhanced Sampling Techniques and Effects of Force Field Modifications

scientific article published on 01 April 2022

UUCG RNA Tetraloop as a Formidable Force-Field Challenge for MD Simulations

scientific article published on 20 November 2020

Understanding in-line probing experiments by modeling cleavage of nonreactive RNA nucleotides ⬇️

scientific article published on 15 February 2017

W-RESP: Well-Restrained Electrostatic Potential-Derived Charges. Revisiting the Charge Derivation Model

scientific article published on 17 May 2021

Paulina is supported by:

About Paulina

Help