List of works by Duncan Maccannell

A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage

scientific article published on 31 March 2020

Bacterial strain typing

scientific article published on September 2013

Canonical Single Nucleotide Polymorphisms (SNPs) for High-Resolution Subtyping of Shiga-Toxin Producing Escherichia coli (STEC) O157:H7

scientific article published on July 2015

Carbapenem-resistant Klebsiella pneumoniae producing New Delhi metallo-β-lactamase at an acute care hospital, Colorado, 2012.

scientific article published on April 2014

Chlamydia psittaci comparative genomics reveals intraspecies variations in the putative outer membrane and type III secretion system genes.

scientific article

Clostridium difficile infections in a Canadian tertiary care hospital before and during a regional epidemic associated with the BI/NAP1/027 strain.

scientific article published on 23 June 2008

Cryptic transmission of SARS-CoV-2 in Washington State

scientific article published on 06 April 2020

Cryptic transmission of SARS-CoV-2 in Washington state

scientific article published on 10 September 2020

Development and evaluation of a novel, semiautomated Clostridium difficile typing platform

scientific article published on 21 November 2012

Development and validation of an internationally-standardized, high-resolution capillary gel-based electrophoresis PCR-ribotyping protocol for Clostridium difficile ⬇️

scientific article

Development of a consensus method for culture of Clostridium difficile from meat and its use in a survey of U.S. retail meats

scientific article published on 21 August 2012

Draft genome sequences of Bordetella holmesii strains from blood (F627) and nasopharynx (H558).

scientific article published on 21 March 2013

Early introductions and transmission of SARS-CoV-2 variant B.1.1.7 in the United States

scientific article published on 03 April 2021

Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States

scientific article

Emergence of SARS-CoV-2 B.1.1.7 Lineage - United States, December 29, 2020-January 12, 2021

Epidemiology of community-associated Clostridium difficile infection, 2009 through 2011.

scientific article published on July 2013

Evolution and Transmission of Carbapenem-Resistant Klebsiella pneumoniae Expressing the blaOXA-232 Gene During an Institutional Outbreak Associated With Endoscopic Retrograde Cholangiopancreatography

scientific article published on April 2017

Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package

scientific article published in 2022

Genome Sequence of Salmonella enterica Serotype Tennessee Strain CDC07-0191, Implicated in the 2006-2007 Multistate Food-Borne Outbreak Linked to Peanut Butter in the United States.

scientific article published on 23 May 2013

Genome Sequences of 228 Shiga Toxin-Producing Escherichia coli Isolates and 12 Isolates Representing Other Diarrheagenic E. coli Pathotypes

scientific article published on 7 August 2014

Genomic Analysis of the Emergence and Rapid Global Dissemination of the Clonal Group 258 Klebsiella pneumoniae Pandemic

scientific article

Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California ⬇️

scientific article published on 08 June 2020

Good laboratory practice for clinical next-generation sequencing informatics pipelines.

scientific article

Integrating Advanced Molecular Technologies into Public Health

scientific article

Molecular analysis of Clostridium difficile PCR ribotype 027 isolates from Eastern and Western Canada

scientific article

New Delhi metallo-β-lactamase-producing carbapenem-resistant Escherichia coli associated with exposure to duodenoscopes.

scientific article published on October 2014

Next-Generation Sequencing of Infectious Pathogens

scientific article published on 01 March 2019

Pathogen Genomics in Public Health

scientific article published on 01 December 2019

Platforms and Analytical Tools Used in Nucleic Acid Sequence-Based Microbial Genotyping Procedures

scientific article published on 01 January 2019

Prevalence and risk factors associated with vancomycin-resistant Staphylococcus aureus precursor organism colonization among patients with chronic lower-extremity wounds in Southeastern Michigan.

scientific article published on 26 July 2013

Proton pump inhibitors increase significantly the risk of Clostridium difficile infection in a low-endemicity, non-outbreak hospital setting

scientific article published on 19 December 2008

STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies

scientific article published on 05 August 2020

Strengthening the Reporting of Molecular Epidemiology for Infectious Diseases (STROME-ID): an extension of the STROBE statement.

scientific article

Ten recommendations for supporting open pathogen genomic analysis in public health

scientific article published on 11 June 2020

Whole-genome analysis of Exserohilum rostratum from an outbreak of fungal meningitis and other infections

scientific article

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