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List of works by Ōsumi Yoshinori

A Unified Nomenclature for Yeast Autophagy-Related Genes ⬇️

scientific article (publication date: October 2003)

A family of basic amino acid transporters of the vacuolar membrane from Saccharomyces cerevisiae

scientific article

A new protein conjugation system in human. The counterpart of the yeast Apg12p conjugation system essential for autophagy

scientific article

A novel role for 12/15-lipoxygenase in regulating autophagy

scientific article

A protein conjugation system essential for autophagy

scientific article

A protein conjugation system in yeast with homology to biosynthetic enzyme reaction of prokaryotes

scientific article

A sorting nexin PpAtg24 regulates vacuolar membrane dynamics during pexophagy via binding to phosphatidylinositol-3-phosphate

scientific article

A ubiquitin-like system mediates protein lipidation

scientific article

ATG systems from the protein structural point of view

scientific article published on April 2009

Ald6p is a preferred target for autophagy in yeast, Saccharomyces cerevisiae

scientific article published on 4 February 2004

Aminopeptidase I Is Targeted to the Vacuole by a Nonclassical Vesicular Mechanism ⬇️

scientific article published on July 14, 1997

An Arabidopsis homolog of yeast ATG6/VPS30 is essential for pollen germination

scientific article

Analyses of APG13 gene involved in autophagy in yeast, Saccharomyces cerevisiae

scientific article

Apg13p and Vac8p are part of a complex of phosphoproteins that are required for cytoplasm to vacuole targeting

scientific article

Apg14p and Apg6/Vps30p Form a Protein Complex Essential for Autophagy in the Yeast, Saccharomyces cerevisiae ⬇️

scientific article published on August 28, 1998

Apg16p is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway

scientific article

Apg1p, a novel protein kinase required for the autophagic process in Saccharomyces cerevisiae

scientific article

Apg2p functions in autophagosome formation on the perivacuolar structure

scientific article

Apg5p functions in the sequestration step in the cytoplasm-to-vacuole targeting and macroautophagy pathways

scientific article

Apg7p/Cvt2p: A novel protein-activating enzyme essential for autophagy

scientific article

Apg9p/Cvt7p is an integral membrane protein required for transport vesicle formation in the Cvt and autophagy pathways

scientific article

Assortment of phosphatidylinositol 3-kinase complexes--Atg14p directs association of complex I to the pre-autophagosomal structure in Saccharomyces cerevisiae

scientific article

AtATG genes, homologs of yeast autophagy genes, are involved in constitutive autophagy in Arabidopsis root tip cells

scientific article

Atg12-Atg5 conjugate enhances E2 activity of Atg3 by rearranging its catalytic site

scientific article

Atg13 HORMA domain recruits Atg9 vesicles during autophagosome formation

scientific article

Atg14: a key player in orchestrating autophagy ⬇️

scientific article published on October 13, 2011

Atg17 functions in cooperation with Atg1 and Atg13 in yeast autophagy

scientific article

Atg17 recruits Atg9 to organize the pre-autophagosomal structure

scientific article

Atg38 is required for autophagy-specific phosphatidylinositol 3-kinase complex integrity

scientific article

Atg4 recycles inappropriately lipidated Atg8 to promote autophagosome biogenesis

scientific article published in February 2012

Atg7 Activates an Autophagy-Essential Ubiquitin-like Protein Atg8 through Multi-Step Recognition

scientific article published on 10 December 2017

Atg8, a ubiquitin-like protein required for autophagosome formation, mediates membrane tethering and hemifusion

scientific article

Atg8-family interacting motif crucial for selective autophagy

scientific article

Atg9 vesicles are an important membrane source during early steps of autophagosome formation

scientific article

Atg9 vesicles recruit vesicle-tethering proteins Trs85 and Ypt1 to the autophagosome formation site

scientific article

Autophagosome formation can be achieved in the absence of Atg18 by expressing engineered PAS-targeted Atg2.

scientific article published on 19 June 2012

Autophagosome formation in mammalian cells

scientific article

Autophagosome requires specific early Sec proteins for its formation and NSF/SNARE for vacuolar fusion

scientific article

Autophagy Increases Zinc Bioavailability to Avoid Light-Mediated Reactive Oxygen Species Production under Zinc Deficiency

scientific article published on 15 January 2020

Autophagy in Yeast: ATOR-Mediated Response to Nutrient Starvation ⬇️

scientific article published on January 1, 2004

Autophagy in development and stress responses of plants

scientific article published on 9 January 2006

Autophagy in yeast demonstrated with proteinase-deficient mutants and conditions for its induction

scientific article (publication date: October 1992)

Autophagy induction under carbon starvation conditions is negatively regulated by carbon catabolite repression

scientific article published on 17 October 2017

Autophagy is required for maintenance of amino acid levels and protein synthesis under nitrogen starvation

scientific article published on 15 July 2005

Autophagy negatively regulates cell death by controlling NPR1-dependent salicylic acid signaling during senescence and the innate immune response in Arabidopsis

scientific article published on 22 September 2009

Autophagy plays a role in chloroplast degradation during senescence in individually darkened leaves

scientific article published on 12 December 2008

Autophagy related genes in yeast, S. cerevisiae

scientific article

Autophagy-related Protein 32 Acts as Autophagic Degron and Directly Initiates Mitophagy

scientific article

Autophagy-related protein 8 (Atg8) family interacting motif in Atg3 mediates the Atg3-Atg8 interaction and is crucial for the cytoplasm-to-vacuole targeting pathway

scientific article published on 8 July 2010

Autophagy: Close Contact Keeps Out the Uninvited

Bcl-2-like protein 13 is a mammalian Atg32 homologue that mediates mitophagy and mitochondrial fragmentation

scientific article published on 6 July 2015

Beclin-phosphatidylinositol 3-kinase complex functions at the trans-Golgi network

scientific article

Bur1 functions with TORC1 for vacuole‐mediated cell cycle progression

scientific article published on 15 February 2022

Characterization of a novel autophagy-specific gene, ATG29.

scientific article

Characterization of the Atg17-Atg29-Atg31 complex specifically required for starvation-induced autophagy in Saccharomyces cerevisiae

scientific article

Cis1/Atg31 is required for autophagosome formation in Saccharomyces cerevisiae

scientific article

Cloning of the gene encoding a putative serine/threonine protein kinase which enhances spermine uptake in Saccharomyces cerevisiae

scientific article

Corrigendum to "Atg7 Activates an Autophagy-Essential Ubiquitin-like Protein Atg8 through Multi-step Recognition" [J. Mol. Biol. 430 (3) (Feb 2, 2018) 249-257].

scientific article published on 6 April 2018

Crystallization and preliminary X-ray analysis of Atg10.

scientific article published on 21 April 2007

Crystallization and preliminary X-ray analysis of Atg3.

scientific article

Crystallization and preliminary X-ray analysis of LC3-I.

scientific article

Crystallization and preliminary crystallographic analysis of human Atg4B-LC3 complex

scientific article published on 17 January 2007

Crystallization of Saccharomyces cerevisiae alpha-mannosidase, a cargo protein of the Cvt pathway

scientific article published on 22 May 2009

Crystallization of Saccharomyces cerevisiae aminopeptidase 1, the major cargo protein of the Cvt pathway

scientific article published on 10 February 2007

Crystallization of the Atg12-Atg5 conjugate bound to Atg16 by the free-interface diffusion method

scientific article published on 18 April 2008

Crystallization of the coiled-coil domain of Atg16 essential for autophagy

scientific article published on 31 October 2008

Current knowledge of the pre-autophagosomal structure (PAS).

scientific article published on 05 February 2010

Cvt9/Gsa9 functions in sequestering selective cytosolic cargo destined for the vacuole

scientific article

Cytoplasm-to-vacuole targeting and autophagy employ the same machinery to deliver proteins to the yeast vacuole

scientific article

Different phosphatidylinositol 3-phosphate asymmetries in yeast and mammalian autophagosomes revealed by a new electron microscopy technique

scientific article published on 24 March 2014

Dimeric coiled-coil structure of Saccharomyces cerevisiae Atg16 and its functional significance in autophagy

scientific article published on 4 November 2009

Dissection of autophagosome formation using Apg5-deficient mouse embryonic stem cells

scientific article

Dynamic aspects of vacuolar and cytosolic amino acid pools of Saccharomyces cerevisiae

scientific article

Erratum: Yeast and mammalian autophagosomes exhibit distinct phosphatidylinositol 3-phosphate asymmetries

scientific article published on 11 November 2014

Expression, purification and crystallization of the Atg5-Atg16 complex essential for autophagy

scientific article

Fine mapping of autophagy-related proteins during autophagosome formation in Saccharomyces cerevisiae

scientific article published on 2 April 2013

Formation of the approximately 350-kDa Apg12-Apg5.Apg16 multimeric complex, mediated by Apg16 oligomerization, is essential for autophagy in yeast

scientific article

Formation process of autophagosome is traced with Apg8/Aut7p in yeast

scientific article

Functional identification of AtAVT3, a family of vacuolar amino acid transporters, in Arabidopsis.

scientific article published on 7 December 2016

Genetic study of the role of calcium ions in the cell division cycle of Saccharomyces cerevisiae: a calcium-dependent mutant and its trifluoperazine-dependent pseudorevertants.

scientific article published in January 1984

Geranylgeranylated SNAREs are dominant inhibitors of membrane fusion

scientific article

Hierarchy of Atg proteins in pre-autophagosomal structure organization

scientific article

Highly oxidized peroxisomes are selectively degraded via autophagy in Arabidopsis

scientific article

Historical landmarks of autophagy research

scientific article published on 24 December 2013

Historical overview of autophagy

scientific article

Hrr25 phosphorylates the autophagic receptor Atg34 to promote vacuolar transport of α-mannosidase under nitrogen starvation conditions

scientific article

Hrr25 triggers selective autophagy-related pathways by phosphorylating receptor proteins

scientific article

Impairment of starvation-induced and constitutive autophagy in Atg7-deficient mice

scientific journal article

In vivo analysis of autophagy in response to nutrient starvation using transgenic mice expressing a fluorescent autophagosome marker

scientific article

In vivo and in vitro reconstitution of Atg8 conjugation essential for autophagy

scientific article

Inhibitory effect of diphtheria toxin on amino acid incorporation in Escherichia coli cell-free system

scientific article

Interrelationships among Atg proteins during autophagy inSaccharomyces cerevisiae

scientific article published in 2004

Involvement of the secretory pathway in the autophagosome formation

scientific article

Isolation and characterization of autophagy-defective mutants of Saccharomyces cerevisiae

scientific article

LC3, GABARAP and GATE16 localize to autophagosomal membrane depending on form-II formation

scientific article

LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing

scientific article

Lap3 is a selective target of autophagy in yeast, Saccharomyces cerevisiae

scientific article

Leaf senescence and starvation-induced chlorosis are accelerated by the disruption of an Arabidopsis autophagy gene

scientific article

Lipidation of Atg8: how is substrate specificity determined without a canonical E3 enzyme?

scientific article published on 21 October 2008

Lipidation-independent vacuolar functions of Atg8 rely on its noncanonical interaction with a vacuole membrane protein

Localization of Atg3 to autophagy-related membranes and its enhancement by the Atg8-family interacting motif to promote expansion of the membranes

scientific article published on 11 February 2015

Membrane morphology is actively transformed by covalent binding of the protein Atg8 to PE-lipids

scientific article (publication date: 2014)

Mitochondria-anchored receptor Atg32 mediates degradation of mitochondria via selective autophagy

scientific article

Mobilization of rubisco and stroma-localized fluorescent proteins of chloroplasts to the vacuole by an ATG gene-dependent autophagic process

scientific article published on 9 July 2008

Modification of a ubiquitin-like protein Paz2 conducted micropexophagy through formation of a novel membrane structure

scientific article

Molecular dissection of autophagy: two ubiquitin-like systems

scientific article (publication date: March 2001)

Molecular machinery of autophagosome formation in yeast, Saccharomyces cerevisiae

scientific article published on 12 March 2007

Molecular mechanism of autophagy in yeast, Saccharomyces cerevisiae

scientific article

Molecular mechanism of bulk protein degradation in lysosome/vacuole

scientific article

Molecular mechanisms of autophagy in yeast

scientific article published on December 1, 2008

Mouse Apg10 as an Apg12-conjugating enzyme: analysis by the conjugation-mediated yeast two-hybrid method

scientific article (publication date: 18 December 2002)

Mouse Apg16L, a novel WD-repeat protein, targets to the autophagic isolation membrane with the Apg12-Apg5 conjugate

scientific article (publication date: May 2003)

Mutational analysis of Csc1/Vps4p: involvement of endosome in regulation of autophagy in yeast

scientific article

Noncanonical recognition and UBL loading of distinct E2s by autophagy-essential Atg7

scientific article published on 11 November 2012

Novel families of vacuolar amino acid transporters

scientific article published on August 2008

Novel system for monitoring autophagy in the yeast Saccharomyces cerevisiae

scientific article (publication date: 5 May 1995)

Organelle degradation during the lens and erythroid differentiation is independent of autophagy

scientific article

Organization of the pre-autophagosomal structure responsible for autophagosome formation

scientific article

OsATG10b, an autophagosome component, is needed for cell survival against oxidative stresses in rice

scientific article

PI3K signaling of autophagy is required for starvation tolerance and virulenceof Cryptococcus neoformans

scientific article

Phospholipid methylation controls Atg32-mediated mitophagy and Atg8 recycling

scientific article published on 5 October 2015

Physiological pH and acidic phospholipids contribute to substrate specificity in lipidation of Atg8.

scientific article published on 10 June 2008

Physiological role of autophagy for starvation-adaptation in yeast

scientific article

Plant autophagy is responsible for peroxisomal transition and plays an important role in the maintenance of peroxisomal quality

scientific article published on 26 March 2014

Processing of ATG8s, ubiquitin-like proteins, and their deconjugation by ATG4s are essential for plant autophagy

scientific article published on 19 October 2004

Promotion of tumorigenesis by heterozygous disruption of the beclin 1 autophagy gene

scientific article

Protein turnover

scientific article

Proteomic profiling of autophagosome cargo in Saccharomyces cerevisiae

scientific article (publication date: 2014)

PtdIns 3-Kinase Orchestrates Autophagosome Formation in Yeast ⬇️

scientific article published on January 4, 2011

Purification and properties of H+-translocating, Mg2+-adenosine triphosphatase from vacuolar membranes of Saccharomyces cerevisiae

scientific article

Receptor-mediated selective autophagy degrades the endoplasmic reticulum and the nucleus

scientific article

Recycling of iron via autophagy is critical for the transition from glycolytic to respiratory growth

scientific article

Role of the Apg12 conjugation system in mammalian autophagy

scientific article

SDS-PAGE Techniques to Study Ubiquitin-Like Conjugation Systems in Yeast Autophagy

SKD1 AAA ATPase-dependent endosomal transport is involved in autolysosome formation

scientific article (publication date: February 2002)

Saccharomyces cerevisiae MATa mutant cells defective in pointed projection formation in response to alpha-factor at high concentrations.

scientific article

Selective Transport of  -Mannosidase by Autophagic Pathways: STRUCTURAL BASIS FOR CARGO RECOGNITION BY Atg19 AND Atg34

scientific article

Selective autophagy regulates insertional mutagenesis by the Ty1 retrotransposon in Saccharomyces cerevisiae

scientific article published in August 2011

Selective transport of alpha-mannosidase by autophagic pathways: identification of a novel receptor, Atg34p

scientific article

Selectivity of mRNA degradation by autophagy in yeast

scientific article published on 19 April 2021

Solubilization and purification of alpha-mannosidase, a marker enzyme of vacuolar membranes in Saccharomyces cerevisiae.

scientific article

Starvation induced cell death in autophagy-defective yeast mutants is caused by mitochondria dysfunction

scientific article (publication date: 2011)

Starvation triggers the delivery of the endoplasmic reticulum to the vacuole via autophagy in yeast

scientific article published in January 2005

Starved cells eat ribosomes

Structural Basis for Receptor-Mediated Selective Autophagy of Aminopeptidase I Aggregates

scientific article

Structural and functional analyses of APG5, a gene involved in autophagy in yeast

scientific article

Structural basis for the specificity and catalysis of human Atg4B responsible for mammalian autophagy

scientific article

Structural basis of Atg8 activation by a homodimeric E1, Atg7

scientific article

Structural basis of starvation-induced assembly of the autophagy initiation complex

scientific article

Structural basis of target recognition by Atg8/LC3 during selective autophagy

scientific article

Structural insights into Atg10-mediated formation of the autophagy-essential Atg12-Atg5 conjugate

scientific article

Structure of Atg5.Atg16, a complex essential for autophagy

scientific article

Structure of the Atg12–Atg5 conjugate reveals a platform for stimulating Atg8–PE conjugation

scientific article

Structure of the novel C-terminal domain of vacuolar protein sorting 30/autophagy-related protein 6 and its specific role in autophagy

scientific article

Structure-based analyses reveal distinct binding sites for Atg2 and phosphoinositides in Atg18.

scientific article published on 31 July 2012

Structure-function relationship of Atg12, a ubiquitin-like modifier essential for autophagy

scientific article

Studies of cargo delivery to the vacuole mediated by autophagosomes in Saccharomyces cerevisiae

scientific article

The Atg12-Atg5 conjugate has a novel E3-like activity for protein lipidation in autophagy

scientific article

The Atg18-Atg2 complex is recruited to autophagic membranes via phosphatidylinositol 3-phosphate and exerts an essential function

scientific article published on 27 June 2008

The C-terminal region of an Apg7p/Cvt2p is required for homodimerization and is essential for its E1 activity and E1-E2 complex formation

scientific article

The Intrinsically Disordered Protein Atg13 Mediates Supramolecular Assembly of Autophagy Initiation Complexes

scientific article

The NMR structure of the autophagy-related protein Atg8

scientific article

The Role of Atg Proteins in Autophagosome Formation ⬇️

scientific article published on July 18, 2011

The Thermotolerant Yeast Kluyveromyces marxianus Is a Useful Organism for Structural and Biochemical Studies of Autophagy

scientific article

The amino-terminal region of Atg3 is essential for association with phosphatidylethanolamine in Atg8 lipidation

scientific article

The autophagy-related protein kinase Atg1 interacts with the ubiquitin-like protein Atg8 via the Atg8 family interacting motif to facilitate autophagosome formation

scientific article

The crystal structure of Atg3, an autophagy-related ubiquitin carrier protein (E2) enzyme that mediates Atg8 lipidation

scientific article

The crystal structure of microtubule-associated protein light chain 3, a mammalian homologue of Saccharomyces cerevisiae Atg8.

scientific article

The crystal structure of plant ATG12 and its biological implication in autophagy

scientific article

The early secretory pathway contributes to autophagy in yeast

scientific article published in February 2003

The first molecular evidence that autophagy relates rimmed vacuole formation in chloroquine myopathy

scientific article published on May 2002

The pre-autophagosomal structure organized by concerted functions of APG genes is essential for autophagosome formation

scientific article

The reversible modification regulates the membrane-binding state of Apg8/Aut7 essential for autophagy and the cytoplasm to vacuole targeting pathway

scientific article

The role of autophagy during the early neonatal starvation period

scientific article (publication date: 23 December 2004)

The structure of Atg4B-LC3 complex reveals the mechanism of LC3 processing and delipidation during autophagy

scientific article

The yeast Tor signaling pathway is involved in G2/M transition via polo-kinase

scientific article

The yeast chromatin remodeler Rsc1-RSC complex is required for transcriptional activation of autophagy-related genes and inhibition of the TORC1 pathway in response to nitrogen starvation

scientific article

Three-dimensional analysis of morphogenesis induced by mating pheromone alpha factor in Saccharomyces cerevisiae

scientific article published in October 1989

Tor directly controls the Atg1 kinase complex to regulate autophagy

scientific article

Tor, a phosphatidylinositol kinase homologue, controls autophagy in yeast

scientific article

Tor-mediated induction of autophagy via an Apg1 protein kinase complex

scientific article

Tor2 directly phosphorylates the AGC kinase Ypk2 to regulate actin polarization

scientific article

Transport of phosphatidylinositol 3-phosphate into the vacuole via autophagic membranes in Saccharomyces cerevisiae

article published in 2008

Two Distinct Pathways for Targeting Proteins from the Cytoplasm to the Vacuole/Lysosome ⬇️

scientific article (publication date: 29 December 1997)

Two distinct Vps34 phosphatidylinositol 3-kinase complexes function in autophagy and carboxypeptidase Y sorting in Saccharomyces cerevisiae

scientific article

Two distinct mechanisms target the autophagy-related E3 complex to the pre-autophagosomal structure

Two newly identified sites in the ubiquitin-like protein Atg8 are essential for autophagy

scientific article

Two ubiquitin-like conjugation systems essential for autophagy

scientific article published on April 2004

Two-colored fluorescence correlation spectroscopy screening for LC3-P62 interaction inhibitors

scientific article

Ultrastructural analysis of the autophagic process in yeast: detection of autophagosomes and their characterization

scientific article

Unveiling the Molecular Mechanisms of Plant Autophagy-From Autophagosomes to Vacuoles in Plants

article

Vacuolar ion channel of the yeast, Saccharomyces cerevisiae

scientific article

Vam2/Vps41p and Vam6/Vps39p are components of a protein complex on the vacuolar membranes and involved in the vacuolar assembly in the yeast Saccharomyces cerevisiae

scientific article

Vam3p, a new member of syntaxin related protein, is required for vacuolar assembly in the yeast Saccharomyces cerevisiae

scientific article

Yeast and mammalian autophagosomes exhibit distinct phosphatidylinositol 3-phosphate asymmetries

scientific article

Yeast autophagosomes: de novo formation of a membrane structure

scientific article

Zinc starvation induces autophagy in yeast.

scientific article published on 6 March 2017

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