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List of works by Jixian Zhai

A One Precursor One siRNA Model for Pol IV-Dependent siRNA Biogenesis

scientific article published on October 2015

ARGONAUTE10 promotes the degradation of miR165/6 through the SDN1 and SDN2 exonucleases in Arabidopsis

scientific article

An Online Database for Exploring Over 2,000 Arabidopsis Small RNA Libraries

scientific article published on 16 December 2019

An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes.

scientific article published on 2 December 2014

Biogenesis and function of rice small RNAs from non-coding RNA precursors.

scientific article published on March 2013

CG gene body DNA methylation changes and evolution of duplicated genes in cassava

scientific article

Characteristics and processing of Pol IV-dependent transcripts in Arabidopsis

scientific article published on 30 December 2016

Cis-directed cleavage and nonstoichiometric abundances of 21-nucleotide reproductive phased small interfering RNAs in grasses

scientific article published on 30 April 2018

Conservation and divergence in eukaryotic DNA methylation.

scientific article

Construction of Specific Parallel Amplification of RNA Ends (SPARE) libraries for the systematic identification of plant microRNA processing intermediates.

scientific article

DNA methylome of the 20-gigabase Norway spruce genome.

scientific article

Deep Sequencing from hen1 Mutants to Identify Small RNA 3' Modifications ⬇️

scientific article published on January 1, 2012

Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice

scientific article published on 19 February 2014

Distinct and cooperative activities of HESO1 and URT1 nucleotidyl transferases in microRNA turnover in Arabidopsis.

scientific article published on 30 April 2015

Efficient transformation and artificial miRNA gene silencing in Lemna minor

scientific article published on 2 July 2014

FLEP-seq: simultaneous detection of RNA polymerase II position, splicing status, polyadenylation site and poly(A) tail length at genome-wide scale by single-molecule nascent RNA sequencing

scientific article published in 2021

Genome sequencing and analysis of the model grass Brachypodium distachyon

scientific article

Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in Arabidopsis

scientific article

Identification and functional characterization of soybean root hair microRNAs expressed in response to Bradyrhizobium japonicum infection.

scientific article published on 14 May 2015

Identification of microRNAs and their mRNA targets during soybean nodule development: functional analysis of the role of miR393j-3p in soybean nodulation.

scientific article published on 17 March 2015

Large-scale comparative epigenomics reveals hierarchical regulation of non-CG methylation in Arabidopsis.

scientific article published on 16 January 2018

MS23, a master basic helix-loop-helix factor, regulates the specification and development of the tapetum in maize.

scientific article published on 2 December 2016

MTHFD1 controls DNA methylation in Arabidopsis ⬇️

scientific article published on 13 June 2016

MicroRNA Processing: Battle of the Bulge

scientific article published on 01 January 2010

MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs.

scientific article

Multiple RNA recognition patterns during microRNA biogenesis in plants.

scientific article published on 29 August 2013

Mutations in the Type II protein arginine methyltransferase AtPRMT5 result in pleiotropic developmental defects in Arabidopsis.

scientific article published on 15 June 2007

Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon

scientific article

Physiological stressors and invasive plant infections alter the small RNA transcriptome of the rice blast fungus, Magnaporthe oryzae. ⬇️

scientific article

Post-transcriptional splicing of nascent RNA contributes to widespread intron retention in plants

scientific article published on 15 June 2020

RNA polymerase V-dependent small RNAs in Arabidopsis originate from small, intergenic loci including most SINE repeats.

scientific article published on July 2012

RNA-directed DNA methylation involves co-transcriptional small-RNA-guided slicing of polymerase V transcripts in Arabidopsis.

scientific article

Rapid construction of parallel analysis of RNA end (PARE) libraries for Illumina sequencing.

scientific article

Reprint of: construction of Specific Parallel Amplification of RNA Ends (SPARE) libraries for the systematic identification of plant microRNA processing intermediates.

scientific article

Roles of small RNAs in soybean defense against Phytophthora sojae infection.

scientific article published on 28 July 2014

Short-read sequencing technologies for transcriptional analyses.

scientific article published on January 2009

Small RNA-directed epigenetic natural variation in Arabidopsis thaliana

scientific article

Solitary fibrous tumor of the abdominal wall re-surfacing as unilateral pleural effusion and mass: A case report and review of the literature

scientific article published on 31 October 2017

Spatiotemporally dynamic, cell-type-dependent premeiotic and meiotic phasiRNAs in maize anthers.

scientific article

The Amborella Genome and the Evolution of Flowering Plants

scientific article

The Arabidopsis nucleotidyl transferase HESO1 uridylates unmethylated small RNAs to trigger their degradation

scientific article

The Ca2+ /calmodulin2-binding transcription factor TGA3 elevates LCD expression and H2 S production to bolster Cr6+ tolerance in Arabidopsis.

scientific article published on 3 July 2017

The Dynamic Kaleidoscope of RNA Biology in Plants

scientific article published on 01 January 2020

The characterization of Mediator 12 and 13 as conditional positive gene regulators in Arabidopsis

scientific article published on 03 June 2020

The chromatin will never forget

scientific article published on 30 November 2020

miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis.

scientific article

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