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List of works by Roeland M H Merks

A cell-based model of extracellular-matrix-guided endothelial cell migration during angiogenesis.

scientific article

A global sensitivity analysis approach for morphogenesis models. ⬇️

scientific article

A local uPAR-plasmin-TGFβ1 positive feedback loop in a qualitative computational model of angiogenic sprouting explains the in vitro effect of fibrinogen variants

scientific article published on 06 July 2018

Adapting a Plant Tissue Model to Animal Development: Introducing Cell Sliding into VirtualLeaf

scientific article published on 29 March 2019

An in silico study on the role of smooth muscle cell migration in neointimal formation after coronary stenting.

scientific article

Blood vessel tortuosity selects against evolution of aggressive tumor cells in confined tissue environments: A modeling approach

scientific article published on 17 July 2017

Building simulation models of developing plant organs using VirtualLeaf.

scientific article published in January 2013

Cell-based computational modeling of vascular morphogenesis using Tissue Simulation Toolkit

scientific article

Computational Screening of Tip and Stalk Cell Behavior Proposes a Role for Apelin Signaling in Sprout Progression. ⬇️

scientific article

Computational modelling of cell motility modes emerging from cell-matrix adhesion dynamics

scientific article published on 14 February 2022

Dynamic mechanisms of blood vessel growth.

scientific article published on January 2006

Emergence of microbial diversity due to cross-feeding interactions in a spatial model of gut microbial metabolism.

scientific article

Emergence of tissue polarization from synergy of intracellular and extracellular auxin signaling.

scientific article

Endothelial microparticles affect angiogenesis in vitro: role of oxidative stress

scientific article published on 06 May 2005

Glycolytic regulation of cell rearrangement in angiogenesis.

scientific article

Individual cell-based models of cell scatter of ARO and MLP-29 cells in response to hepatocyte growth factor.

scientific article

Large-scale parameter studies of cell-based models of tissue morphogenesis using CompuCell3D or VirtualLeaf

2015 scientific article

Mechanical cell-matrix feedback explains pairwise and collective endothelial cell behavior in vitro

scientific article (publication date: August 2014)

Memory of cell shape biases stochastic fate decision-making despite mitotic rounding

scientific article

Modeling lignin polymerization. I. Simulation model of dehydrogenation polymers.

scientific article published on 14 May 2010

Morphogenesis of the branching reef coral Madracis mirabilis.

scientific article

Nodal signaling range is regulated by proprotein convertase-mediated maturation.

scientific article published on 12 February 2015

Polyp oriented modelling of coral growth

scientific article published on 01 June 2004

Quantitative analysis of venation patterns of Arabidopsis leaves by supervised image analysis.

scientific article published on 8 November 2011

Redox balance is key to explaining full vs. partial switching to low-yield metabolism

scientific article (publication date: 2012)

Shaping the cell fate.

scientific article published on 13 October 2016

Synergy of cell-cell repulsion and vacuolation in a computational model of lumen formation.

scientific article

Tip cell overtaking occurs as a side effect of sprouting in computational models of angiogenesis.

scientific article published on 21 November 2015

Vascular networks due to dynamically arrested crystalline ordering of elongated cells.

scientific article published on 30 January 2013

VirtualLeaf: an open-source framework for cell-based modeling of plant tissue growth and development.

scientific article

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