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List of works by Willem de Vos

16S rRNA targeted DGGE fingerprinting of microbial communities

scientific article

2843. Maternal Fecal Transplantation to Infants Born by Cesarean Section: Safety and Feasibility

scientific article published on 23 October 2019

9 Functional Genomics of the Thermo-Acidophilic Archaeon Sulfolobus solfataricus

A Bifidobacterial pilus-associated protein promotes colonic epithelial proliferation

scientific article published on 02 December 2018

A Bifidobacterium mixed-species microarray for high resolution discrimination between intestinal bifidobacteria

scientific article

A Continuous Battle for Host-Derived Glycans Between a Mucus Specialist and a Glycan Generalist <i>in vitro</i> and <i>in vivo</i>

scientific article published on 24 June 2021

A Microbiomic Analysis in African Americans with Colonic Lesions Reveals Streptococcus sp.VT162 as a Marker of Neoplastic Transformation.

scientific article

A gut prediction ⬇️

scientific article published on May 29, 2013

A low FODMAP diet is associated with changes in the microbiota and reduction in breath hydrogen but not colonic volume in healthy subjects

scientific article published in PLoS ONE

A microbial world within us

scientific article

A novel consortium of Lactobacillus rhamnosus and Streptococcus thermophilus for increased access to functional fermented foods

scientific article

A purified membrane protein from Akkermansia muciniphila or the pasteurized bacterium improves metabolism in obese and diabetic mice

scientific article published on 28 November 2016

Aberrant gut microbiota composition at the onset of type 1 diabetes in young children

scientific article

Action and function of Akkermansia muciniphila in microbiome ecology, health and disease

scientific article published on 13 October 2017

Adaptation of Akkermansia muciniphila to the oxic-anoxic interface of the mucus layer

scientific article published on 23 September 2016

Adhesion and nanomechanics of pili from the probiotic Lactobacillus rhamnosus GG.

scientific article published on 26 March 2013

Advanced molecular tools for the identification of lactic acid bacteria

scientific article published on March 2007

Akkermansia and Microbial Degradation of Mucus in Cats and Dogs: Implications to the Growing Worldwide Epidemic of Pet Obesity

scientific article published on 15 April 2020

Akkermansia glycaniphila sp. nov., an anaerobic mucin-degrading bacterium isolated from reticulated python faeces

scientific article

Akkermansia muciniphila Adheres to Enterocytes and Strengthens the Integrity of the Epithelial Cell Layer.

scientific article

Akkermansia muciniphila Exerts Lipid-Lowering and Immunomodulatory Effects without Affecting Neointima Formation in Hyperlipidemic APOE*3-Leiden.CETP Mice

scientific article published on 06 August 2019

Akkermansia muciniphila and Helicobacter typhlonius modulate intestinal tumor development in mice.

scientific article published on 29 August 2015

Akkermansia muciniphila and its role in regulating host functions

scientific article

Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium.

scientific article

Akkermansia muciniphila in the Human Gastrointestinal Tract: When, Where, and How?

scientific article published on 23 July 2018

Akkermansia muciniphila induces gut microbiota remodelling and controls islet autoimmunity in NOD mice

scientific article published on 21 December 2017

Akkermansia muciniphila reduces Porphyromonas gingivalis-induced inflammation and periodontal bone destruction

scientific article published on 02 December 2019

Akkermansia muciniphila uses human milk oligosaccharides to thrive in the early life conditions in vitro

scientific article published on 31 August 2020

Allogenic Faecal Microbiota Transfer Induces Immune-Related Gene Sets in the Colon Mucosa of Patients with Irritable Bowel Syndrome

scientific article published on 08 October 2019

Altered gut microbiota and endocannabinoid system tone in obese and diabetic leptin-resistant mice: impact on apelin regulation in adipose tissue.

scientific article

An Inducible Operon Is Involved in Inulin Utilization in Lactobacillus plantarum Strains, as Revealed by Comparative Proteogenomics and Metabolic Profiling.

scientific article published on 4 November 2016

An agr-like two-component regulatory system in Lactobacillus plantarum is involved in production of a novel cyclic peptide and regulation of adherence

scientific article published on August 2005

An iterative workflow for mining the human intestinal metaproteome

scientific article

Anaerobic benzene degradation under denitrifying conditions: Peptococcaceae as dominant benzene degraders and evidence for a syntrophic process

scientific article published on 01 February 2012

Anaerobic microbial dehalogenation

scientific article

Anaerostipes rhamnosivorans sp. nov., a human intestinal, butyrate-forming bacterium

scientific article

Analysis of 16S rDNA reveals bacterial shift during in vitro fermentation of fermentable carbohydrate using piglet faeces as inoculum

scientific article published on 01 August 2003

Analysis of growth of Lactobacillus plantarum WCFS1 on a complex medium using a genome-scale metabolic model

scientific article published on 24 October 2006

Analysis of infant isolates of Bifidobacterium breve by comparative genome hybridization indicates the existence of new subspecies with marked infant specificity

scientific article published on 21 June 2011

Analysis of the role of RsbV, RsbW, and RsbY in regulating {sigma}B activity in Bacillus cereus

scientific article published on August 2005

Antibiotic use in childhood alters the gut microbiota and predisposes to overweight.

scientific article published on 20 June 2016

Antibiotics in early life associate with specific gut microbiota signatures in a prospective longitudinal infant cohort

scientific article published on 18 January 2020

Assessment of CcpA-mediated catabolite control of gene expression in Bacillus cereus ATCC 14579.

scientific article

Association of Early-Life Antibiotic Use and Protective Effects of Breastfeeding: Role of the Intestinal Microbiota

scientific article published on 13 June 2016

Associations between Pro- and Anti-Inflammatory Gastro-Intestinal Microbiota, Diet, and Cognitive Functioning in Dutch Healthy Older Adults: The NU-AGE Study

scientific article published on 12 November 2020

Associations between the human intestinal microbiota, Lactobacillus rhamnosus GG and serum lipids indicated by integrated analysis of high-throughput profiling data

scientific article

Autoregulation of subtilin biosynthesis in Bacillus subtilis: the role of the spa-box in subtilin-responsive promoters

scientific article published on 01 September 2004

Bacterial diversity in meconium of preterm neonates and evolution of their fecal microbiota during the first month of life

scientific article

Bacterial gene expression detected in human faeces by reverse transcription-PCR ⬇️

scientific article published on October 1, 2003

Bacteriological and Immunological Profiling of Meconium and Fecal Samples from Preterm Infants: A Two-Year Follow-Up Study

scientific article published on 27 November 2017

Beyond diversity: functional microbiomics of the human colon

scientific article published on 10 January 2006

Bifidobacterium population analysis in the infant gut by direct mapping of genomic hybridization patterns: potential for monitoring temporal development and effects of dietary regimens

scientific article published on 26 October 2010

Biochemical adaptations of two sugar kinases from the hyperthermophilic archaeon Pyrococcus furiosus

scientific article published on August 2002

Biochemical characterization of the xylan hydrolysis profile of the extracellular endo-xylanase from Geobacillus thermodenitrificans T12.

scientific article

Biodiversity-based identification and functional characterization of the mannose-specific adhesin of Lactobacillus plantarum.

scientific article

Biotechnology of health-promoting bacteria

scientific article published on 12 March 2019

Bowel Biofilms: Tipping Points between a Healthy and Compromised Gut?

scientific article published on 12 September 2018

Bridging Bacteria and the Gut: Functional Aspects of Type IV Pili

scientific article published on 05 March 2020

Butyrate-producing Clostridium cluster XIVa species specifically colonize mucins in an in vitro gut model

scientific article published on 13 December 2012

CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3

scientific article published on 19 April 2012

Causality of small and large intestinal microbiota in weight regulation and insulin resistance

scientific article

Cell to cell communication by autoinducing peptides in gram-positive bacteria

scientific article

Characterization and mode of action of an exopolygalacturonase from the hyperthermophilic bacterium Thermotoga maritima

scientific article published in November 2005

Characterization of CprK1, a CRP/FNR-type transcriptional regulator of halorespiration from Desulfitobacterium hafniense

scientific article published on April 2006

Characterization of Highly Mucus-Adherent Non-GMO Derivatives of Lacticaseibacillus rhamnosus GG

scientific article published on 19 August 2020

Characterization of Outer Membrane Proteome of Akkermansia muciniphila Reveals Sets of Novel Proteins Exposed to the Human Intestine

scientific article published on 26 July 2016

Characterization of germination receptors of Bacillus cereus ATCC 14579.

scientific article

Characterization of plasmid pRT1 from Pyrococcus sp. strain JT1.

scientific article

Characterization of the SpaCBA Pilus Fibers in the Probiotic Lactobacillus rhamnosus GG ⬇️

scientific article published on January 13, 2012

Characterization of the role of para-aminobenzoic acid biosynthesis in folate production by Lactococcus lactis

scientific article published on 16 February 2007

Characterization, expression, and mutation of the Lactococcus lactis galPMKTE genes, involved in galactose utilization via the Leloir pathway

scientific article

Cloning and expression of islandisin, a new thermostable subtilisin from Fervidobacterium islandicum, in Escherichia coli

scientific article

Cohort profile: Finnish Health and Early Life Microbiota (HELMi) longitudinal birth cohort

scientific article published on 27 June 2019

Colonic metaproteomic signatures of active bacteria and the host in obesity.

scientific article published on 10 August 2015

Colonic microbiota signatures across five northern European countries

scientific article

Community analysis of a full-scale anaerobic bioreactor treating paper mill wastewater

scientific article published in March 2005

Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: effective recovery of bacterial and archaeal DNA using mechanical cell lysis

scientific article

Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine

scientific article published on 20 August 2009

Comparative and functional analysis of the rRNA-operons and their tRNA gene complement in different lactic acid bacteria.

scientific article

Comparative genome analysis of Lactobacillus casei strains isolated from Actimel and Yakult products reveals marked similarities and points to a common origin.

scientific article published on July 2013

Comparative genome analysis of central nitrogen metabolism and its control by GlnR in the class Bacilli

scientific article

Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human- mucus binding protein

scientific article

Comparative genomic analysis of the multispecies probiotic-marketed product VSL#3.

scientific article published on 16 February 2018

Comparative genomic and functional analysis of 100 Lactobacillus rhamnosus strains and their comparison with strain GG.

scientific article

Comparative genomic and functional analysis of Lactobacillus casei and Lactobacillus rhamnosus strains marketed as probiotics.

scientific article published on 11 January 2013

Comparative genomics and physiology of the butyrate-producing bacterium Intestinimonas butyriciproducens

scientific article

Comparative genomics of Lactobacillus

scientific article

Comparative genomics of the genus Desulfitobacterium

scientific article published on 11 October 2017

Comparative metaproteomics and diversity analysis of human intestinal microbiota testifies for its temporal stability and expression of core functions

scientific article

Complete Genome Sequence of Akkermansia glycaniphila Strain PytT, a Mucin-Degrading Specialist of the Reticulated Python Gut.

scientific article published on 5 January 2017

Complete Genome Sequence of Enterococcus faecium Commensal Isolate E1002.

scientific article published on 17 March 2016

Complete Genome Sequence of Eubacterium hallii Strain L2-7.

scientific article published on 26 October 2017

Complete genome sequence of Lactobacillus plantarum WCFS1

scientific article

Complete genome sequence of thermophilic Bacillus smithii type strain DSM 4216(T).

scientific article published on 24 August 2016

Complete sequences of four plasmids of Lactococcus lactis subsp. cremoris SK11 reveal extensive adaptation to the dairy environment

scientific article

Concurrent hexachlorobenzene and chloroethene transformation by endogenous dechlorinating microorganisms in the Ebro River sediment

scientific article

Contribution of the Intestinal Microbiota to Human Health: From Birth to 100 Years of Age ⬇️

scientific article published on January 1, 2013

Controlled modulation of folate polyglutamyl tail length by metabolic engineering of Lactococcus lactis

scientific article published on December 2003

Convergence in probiotic Lactobacillus gut-adaptive responses in humans and mice

scientific article published on 27 May 2010

Conversion of dietary inositol into propionate and acetate by commensal Anaerostipes associates with host health

scientific article published on 10 August 2021

Correction: Comparative genomic analysis of the multispecies probiotic-marketed product VSL#3

scientific article published on 30 August 2018

Correction: Genotypic and phenotypic diversity of Lactobacillus rhamnosus clinical isolates, their comparison with strain GG and their recognition by complement system

scientific article published on 10 July 2017

Correction: Through Ageing, and Beyond: Gut Microbiota and Inflammatory Status in Seniors and Centenarians.

scientific article published on 8 June 2010

Correlation of Dehalococcoides 16S rRNA and chloroethene-reductive dehalogenase genes with geochemical conditions in chloroethene-contaminated groundwater

scientific article published on 11 December 2009

Crystal structure of fervidolysin from Fervidobacterium pennivorans, a keratinolytic enzyme related to subtilisin

scientific article

DNA family shuffling of hyperthermostable beta-glycosidases

scientific article

Deciphering the trophic interaction between Akkermansia muciniphila and the butyrogenic gut commensal Anaerostipes caccae using a metatranscriptomic approach

scientific article published on 19 February 2018

Degradation of 1,2-dichloroethane by microbial communities from river sediment at various redox conditions

scientific article

Deletion of sigB in Bacillus cereus affects spore properties

scientific article published on 9 September 2005

Deletion of the sigB gene in Bacillus cereus ATCC 14579 leads to hydrogen peroxide hyperresistance

scientific article published on October 2005

Description of Sulfurospirillum halorespirans sp. nov., an anaerobic, tetrachloroethene-respiring bacterium, and transfer of Dehalospirillum multivorans to the genus Sulfurospirillum as Sulfurospirillum multivorans comb. nov.

scientific article

Development and application of a selective PCR-denaturing gradient gel electrophoresis approach to detect a recently cultivated Bacillus group predominant in soil

scientific article published on October 2004

Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults

scientific article

Development of bacterial and bifidobacterial communities in feces of newborn babies.

scientific article

Development of omics-based protocols for the microbiological characterization of multi-strain formulations marketed as probiotics: the case of VSL#3

scientific article published on 12 August 2019

Differential NF-kappaB pathways induction by Lactobacillus plantarum in the duodenum of healthy humans correlating with immune tolerance

scholarly article

Differential modulation by Akkermansia muciniphila and Faecalibacterium prausnitzii of host peripheral lipid metabolism and histone acetylation in mouse gut organoids.

scientific article

Differential transcriptional response of Bifidobacterium longum to human milk, formula milk, and galactooligosaccharide

scientific article

Discordant temporal development of bacterial phyla and the emergence of core in the fecal microbiota of young children

scientific article published on 2 October 2015

Discovering lactic acid bacteria by genomics

scientific article

Discovering novel biology by in silico archaeology

scientific article

Disruptions of Anaerobic Gut Bacteria Are Associated with Stroke and Post-stroke Infection: a Prospective Case-Control Study

scientific article published on 14 October 2020

Distinct fecal and oral microbiota composition in human type 1 diabetes, an observational study.

scientific article

Divergent roles of CprK paralogues from Desulfitobacterium hafniense in activating gene expression

scientific article published in December 2008

Diversity of Bifidobacterium and Lactobacillus spp. in Breast-Fed and Formula-Fed Infants as Assessed by 16S rDNA Sequence Differences

article

Diversity of the human gastrointestinal tract microbiota revisited.

scientific article

Diversity, dynamics, and activity of bacterial communities during production of an artisanal Sicilian cheese as evaluated by 16S rRNA analysis

scientific article

Diversity, vitality and activities of intestinal lactic acid bacteria and bifidobacteria assessed by molecular approaches

scientific article

Donor Fecal Microbiota Transplantation Alters Gut Microbiota and Metabolites in Obese Individuals With Steatohepatitis

scientific article published on 07 October 2020

Draft Genome Sequences of the Aerobic Strains Lactobacillus gasseri AL3 and AL5.

scientific article published on 4 May 2017

Duodenal infusion of donor feces for recurrent Clostridium difficile

scientific article

Duodenal microbiota composition and mucosal homeostasis in pediatric celiac disease

scientific article published on 11 July 2013

Durable coexistence of donor and recipient strains after fecal microbiota transplantation.

scientific article

Early life colonization of the human gut: microbes matter everywhere

scientific article published on 04 August 2018

Effect of Vegan Fecal Microbiota Transplantation on Carnitine- and Choline-Derived Trimethylamine-N-Oxide Production and Vascular Inflammation in Patients With Metabolic Syndrome

scientific article

Effect of acid stress on protein expression and phosphorylation in Lactobacillus rhamnosus GG

scientific article published on 16 November 2011

Effect of amino acid availability on vitamin B12 production in Lactobacillus reuteri

scientific article

Effect of different NADH oxidase levels on glucose metabolism by Lactococcus lactis: kinetics of intracellular metabolite pools determined by in vivo nuclear magnetic resonance

scientific article published on December 2002

Effect of soil sample preservation, compared to the effect of other environmental variables, on bacterial and eukaryotic diversity

scientific article

Effects of Soluble Corn Fiber Alone or in Synbiotic Combination with Lactobacillus rhamnosus GG and the Pilus-Deficient Derivative GG-PB12 on Fecal Microbiota, Metabolism, and Markers of Immune Function: A Randomized, Double-Blind, Placebo-Controlle

scientific article published on 12 December 2017

Effects of bowel cleansing on the intestinal microbiota

scientific article published on 19 December 2014

Effects of plant stanol ester consumption on fasting plasma oxy(phyto)sterol concentrations as related to fecal microbiota characteristics

scientific article

Electron transport chains of lactic acid bacteria - walking on crutches is part of their lifestyle ⬇️

scientific article published on April 29, 2009

Encapsulation of the therapeutic microbe Akkermansia muciniphila in a double emulsion enhances survival in simulated gastric conditions

scientific article

Engineering a selectable marker for hyperthermophiles

scientific article published on 7 January 2005

Engineering metabolic highways in Lactococci and other lactic acid bacteria

scientific article published on February 2004

Engineering of carbon distribution between glycolysis and sugar nucleotide biosynthesis in Lactococcus lactis

scientific article

Enrichment and detection of microorganisms involved in direct and indirect methanogenesis from methanol in an anaerobic thermophilic bioreactor

scientific article published in October 2005

Enrichment of sulfidogenic bacteria from the human intestinal tract

scientific article published on 2 February 2017

Enterotypes in the landscape of gut microbial community composition.

scientific article published on 18 December 2017

Enterotypes of the human gut microbiome

scientific article

Enterotypes of the human gut microbiome

scientific article published in Nature

Erratum: Addendum: Enterotypes of the human gut microbiome

scientific article published in Nature

Establishment of markerless gene deletion tools in thermophilic Bacillus smithii and construction of multiple mutant strains

scientific article

Eubacterium maltosivorans sp. nov., a novel human intestinal acetogenic and butyrogenic bacterium with a versatile metabolism

article published in 2018

Eukaryotic diversity in historical soil samples

scientific article

European consensus conference on faecal microbiota transplantation in clinical practice.

scientific article published on 13 January 2017

Evaluating the microbial diversity of an in vitro model of the human large intestine by phylogenetic microarray analysis

scientific article published on 16 September 2010

Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera

scientific article

Exploiting the ecogenomics toolbox for environmental diagnostics of organohalide-respiring bacteria

scientific article

Exploring Lactobacillus plantarum genome diversity by using microarrays

scientific article

Faecal Metaproteomic Analysis Reveals a Personalized and Stable Functional Microbiome and Limited Effects of a Probiotic Intervention in Adults

scientific article

Faecal and Serum Metabolomics in Paediatric Inflammatory Bowel Disease

scientific article published on 8 September 2016

Faecal microbiota composition and host-microbe cross-talk following gastroenteritis and in postinfectious irritable bowel syndrome

scientific article

Faecal microbiota composition in adults is associated with the FUT2 gene determining the secretor status.

scientific article

Faecal microbiota transplantation halts progression of human new-onset type 1 diabetes in a randomised controlled trial

scientific article published on 26 October 2020

Farewell Wilfred

scientific article published in September 2015

Fat, fibre and cancer risk in African Americans and rural Africans

scientific article

Feasibility of Metatranscriptome Analysis from Infant Gut Microbiota: Adaptation to Solid Foods Results in Increased Activity of Firmicutes at Six Months

scientific article

Fecal Microbiota in Pediatric Inflammatory Bowel Disease and Its Relation to Inflammation

scientific article published on 19 May 2015

Fecal microbiota transplantation against intestinal colonization by extended spectrum beta-lactamase producing Enterobacteriaceae: a proof of principle study

scientific article published on 22 March 2018

Fecal microbiota transplantation as novel therapy in gastroenterology: A systematic review

scientific article published on May 2015

Fecal transplantation treatment of antibiotic-induced, noninfectious colitis and long-term microbiota follow-up

scientific article published on 19 November 2014

Feeding of Lactobacillus sobrius reduces Escherichia coli F4 levels in the gut and promotes growth of infected piglets

scientific article

Findings From a Randomized Controlled Trial of Fecal Transplantation for Patients With Ulcerative Colitis

scientific article published on 30 March 2015

Flux, Impact, and Fate of Halogenated Xenobiotic Compounds in the Gut

scientific article published on 10 July 2018

Folate overproduction in Lactobacillus plantarum WCFS1 causes methotrexate resistance.

scientific article published on 12 June 2009

Fucosylated oligosaccharides in mother's milk alleviate the effects of caesarean birth on infant gut microbiota

scientific article published in Scientific Reports

Functional Analysis of Lactobacillus rhamnosus GG Pili in Relation to Adhesion and Immunomodulatory Interactions with Intestinal Epithelial Cells ⬇️

scientific article published on October 21, 2011

Functional analysis of four bile salt hydrolase and penicillin acylase family members in Lactobacillus plantarum WCFS1.

scientific article

Functional analysis of three plasmids from Lactobacillus plantarum

scientific article published on March 2005

Functional characterization of a mucus-specific LPXTG surface adhesin from probiotic Lactobacillus rhamnosus GG.

scientific article

Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor

scientific article

Functional genomics of lactic acid bacteria: from food to health

scientific article

Functional identification in Lactobacillus reuteri of a PocR-like transcription factor regulating glycerol utilization and vitamin B12 synthesis

scientific article

Functional identification of conserved residues involved in Lactobacillus rhamnosus strain GG sortase specificity and pilus biogenesis

scientific article published on 21 April 2014

Functional ingredient production: application of global metabolic models

scientific article

Gastrointestinal microbiota in irritable bowel syndrome: present state and perspectives

scientific article published on 12 August 2010

Gender-Specific Associations Between Saliva Microbiota and Body Size

scientific article published on 10 April 2019

Genetic and biochemical characterization of the cell wall hydrolase activity of the major secreted protein of Lactobacillus rhamnosus GG

scientific article

Genetic characterization of the bile salt response in Lactobacillus plantarum and analysis of responsive promoters in vitro and in situ in the gastrointestinal tract

scientific article published on December 2004

Genetic diversity of viable, injured, and dead fecal bacteria assessed by fluorescence-activated cell sorting and 16S rRNA gene analysis

scientific article

Genetics of streptococci, lactococci, and enterococci: review of the sixth international conference

scientific article

Genome Sequence of Lactobacillus amylovorus GRL1118, Isolated from Pig Ileum ⬇️

scientific article published on April 8, 2011

Genome and proteome analysis of Pseudomonas chloritidismutans AW-1T that grows on n-decane with chlorate or oxygen as electron acceptor

scientific article published on 20 April 2015

Genome sequence of "Pedosphaera parvula" Ellin514, an aerobic Verrucomicrobial isolate from pasture soil

scientific article

Genome sequence of Chthoniobacter flavus Ellin428, an aerobic heterotrophic soil bacterium

scientific article

Genome sequence of Lactobacillus amylovorus GRL1112.

scientific article published on 3 December 2010

Genome sequence of Victivallis vadensis ATCC BAA-548, an anaerobic bacterium from the phylum Lentisphaerae, isolated from the human gastrointestinal tract

scientific article

Genome sequence of the verrucomicrobium Opitutus terrae PB90-1, an abundant inhabitant of rice paddy soil ecosystems

scientific article

Genome-Scale Model and Omics Analysis of Metabolic Capacities of Akkermansia muciniphila Reveal a Preferential Mucin-Degrading Lifestyle

scientific article published on 7 July 2017

Genome-based in silico detection of putative manganese transport systems in Lactobacillus plantarum and their genetic analysis

scientific article published on 01 April 2005

Genome-scale metabolic model for Lactococcus lactis MG1363 and its application to the analysis of flavor formation

scientific article published on 24 August 2013

Genome-scale model of Streptococcus thermophilus LMG18311 for metabolic comparison of lactic acid bacteria

scientific article published on 3 April 2009

Genome-wide screen for Listeria monocytogenes genes important for growth at high temperatures

scientific article

Genomic and functional analysis of Romboutsia ilealis CRIBT reveals adaptation to the small intestine.

scientific article published on 11 September 2017

Genomic characterization of non-mucus-adherent derivatives of Lactobacillus rhamnosus GG reveals genes affecting pilus biogenesis

scientific article

Genomic convergence between Akkermansia muciniphila in different mammalian hosts

scientific article published on 29 October 2021

Genomic, proteomic, and biochemical analysis of the organohalide respiratory pathway in Desulfitobacterium dehalogenans

scientific article

Genotypic and phenotypic diversity of Lactobacillus rhamnosus clinical isolates, their comparison with strain GG and their recognition by complement system

scientific article

Global and deep molecular analysis of microbiota signatures in fecal samples from patients with irritable bowel syndrome

scientific article published on 05 August 2011

Glycobiome: Bacteria and mucus at the epithelial interface ⬇️

scientific article published on February 1, 2013

Growth and sporulation of Bacillus cereus ATCC 14579 under defined conditions: temporal expression of genes for key sigma factors

scientific article published on April 2004

Gut microbiota composition and Clostridium difficile infection in hospitalized elderly individuals: a metagenomic study

scientific article published on 11 May 2016

Gut microbiota signatures predict host and microbiota responses to dietary interventions in obese individuals

scientific article

Harnessing the power of microbial autotrophy

scientific article published on 26 September 2016

Health benefits and health claims of probiotics: bridging science and marketing

scientific article (publication date: November 2011)

Healthy human gut phageome

scientific article published on 29 August 2016

Helsinki alert of biodiversity and health

scientific article published on 23 April 2015

Heme and menaquinone induced electron transport in lactic acid bacteria

scientific article published on 29 May 2009

High temporal and inter-individual variation detected in the human ileal microbiota

scientific article published in December 2010

High-Level folate production in fermented foods by the B12 producer Lactobacillus reuteri JCM1112.

scientific article

High-throughput PCR screening of genes for three-component regulatory system putatively involved in quorum sensing from low-G + C gram-positive bacteria

scientific article published on March 2003

Homeostasis of the gut barrier and potential biomarkers

scientific article published in December 2016

How to Manipulate the Microbiota: Fecal Microbiota Transplantation

scientific article

Human intestinal metagenomics: state of the art and future

scientific article

Human intestinal microbiota composition is associated with local and systemic inflammation in obesity

scientific article

Hydrogenomics of the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus.

scientific article published on 5 September 2008

Identification and functional characterization of the Lactococcus lactis rfb operon, required for dTDP-rhamnose Biosynthesis ⬇️

scientific article published on March 2004

Identification and functional verification of archaeal-type phosphoenolpyruvate carboxylase, a missing link in archaeal central carbohydrate metabolism

scientific article

Identification of Lactobacillus plantarum genes that are induced in the gastrointestinal tract of mice

scientific article published on September 2004

Identification of a glycolytic regulon in the archaea Pyrococcus and Thermococcus

scientific article published on 01 July 2006

Identification of a novel alpha-galactosidase from the hyperthermophilic archaeon Sulfolobus solfataricus

scientific article published on April 2006

Identification of glucose-fermenting bacteria present in an in vitro model of the human intestine by RNA-stable isotope probing

scientific article published on 22 February 2007

Identification of prebiotic fructooligosaccharide metabolism in Lactobacillus plantarum WCFS1 through microarrays

scientific article published on 19 January 2007

Identification of sigmaB-dependent genes in Bacillus cereus by proteome and in vitro transcription analysis

scientific article published in July 2004

Identification of the Missing Links in Prokaryotic Pentose Oxidation Pathways

scientific article published in Journal of Biological Chemistry

Identification of the sigmaB regulon of Bacillus cereus and conservation of sigmaB-regulated genes in low-GC-content gram-positive bacteria.

scientific article published on 6 April 2007

Identification of the transcriptional response of human intestinal mucosa to Lactobacillus plantarum WCFS1 in vivo

scientific article

Immunostimulatory CpG motifs in the genomes of gut bacteria and their role in human health and disease.

scientific article published on 19 November 2013

Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men

scientific article

Impact of diet on human intestinal microbiota and health.

scientific article

Impact of oral vancomycin on gut microbiota, bile acid metabolism, and insulin sensitivity.

scientific article

Improved annotation of conjugated bile acid hydrolase superfamily members in Gram-positive bacteria

scientific article published on 01 August 2008

Improved taxonomic assignment of human intestinal 16S rRNA sequences by a dedicated reference database

scientific article published on 12 December 2015

Improvement of Insulin Sensitivity after Lean Donor Feces in Metabolic Syndrome Is Driven by Baseline Intestinal Microbiota Composition.

scientific article published in October 2017

Improvement of Lactobacillus plantarum aerobic growth as directed by comprehensive transcriptome analysis

scientific article published on 6 June 2008

In vivo nuclear magnetic resonance studies of glycolytic kinetics in Lactococcus lactis

scientific article published on 01 July 1999

Increased exopolysaccharide production in Lactococcus lactis due to increased levels of expression of the NIZO B40 eps gene cluster

scientific article

Increased production of folate by metabolic engineering of Lactococcus lactis

scientific article

Influence of glutamate on growth, sporulation, and spore properties of Bacillus cereus ATCC 14579 in defined medium

scientific article published on June 2005

Influence of sporulation medium composition on transcription of ger operons and the germination response of spores of Bacillus cereus ATCC 14579.

scientific article published on May 2006

Insertion-sequence-mediated mutations isolated during adaptation to growth and starvation in Lactococcus lactis

scientific article published on November 2004

Insight into the prebiotic concept: lessons from an exploratory, double blind intervention study with inulin-type fructans in obese women

scientific article

Intake of whole-grain and fiber-rich rye bread versus refined wheat bread does not differentiate intestinal microbiota composition in Finnish adults with metabolic syndrome.

scientific article published on 20 March 2013

Integrated In Silico Analysis of Pathway Designs for Synthetic Photo-Electro-Autotrophy

scientific article

Inter-species Metabolic Interactions in an In-vitro Minimal Human Gut Microbiome of Core Bacteria

scientific article published on 08 April 2022

Intestinal Microbiota Signatures Associated With Histological Liver Steatosis in Pediatric-Onset Intestinal Failure

scientific article

Intestinal Microbiota in Hirschsprung Disease

scientific article published on 01 November 2018

Intestinal Ralstonia pickettii augments glucose intolerance in obesity

scientific article

Intestinal colonisation, microbiota and future probiotics?

scientific article published on January 2006

Intestinal epithelial N-acylphosphatidylethanolamine phospholipase D links dietary fat to metabolic adaptations in obesity and steatosis

scientific article published in Nature Communications

Intestinal integrity and Akkermansia muciniphila, a mucin-degrading member of the intestinal microbiota present in infants, adults, and the elderly.

scientific article published on 12 October 2007

Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children

scientific article published on 26 January 2016

Intestinal microbiome landscaping: insight in community assemblage and implications for microbial modulation strategies

scientific article

Intestinal microbiota and diet in IBS: causes, consequences, or epiphenomena?

scientific article

Intestinal microbiota during early life - impact on health and disease.

scientific article published on 5 June 2014

Intestinal microbiota in healthy U.S. young children and adults--a high throughput microarray analysis.

scientific article

Intestinal microbiota in healthy adults: temporal analysis reveals individual and common core and relation to intestinal symptoms

scientific article (publication date: 2011)

Intestinal microbiota in human health and disease: the impact of probiotics

scientific article

Inulin-type fructans modulate intestinal Bifidobacterium species populations and decrease fecal short-chain fatty acids in obese women

scientific article published on 11 June 2014

Involvement of the mannose phosphotransferase system of Lactobacillus plantarum WCFS1 in peroxide stress tolerance.

scientific article published on 2 April 2010

Isolation and characterization of a new CO-utilizing strain, Thermoanaerobacter thermohydrosulfuricus subsp. carboxydovorans, isolated from a geothermal spring in Turkey.

scientific article published on 23 August 2009

Isolation and screening of thermophilic bacilli from compost for electrotransformation and fermentation: characterization of Bacillus smithii ET 138 as a new biocatalyst

scientific article

Isolation and whole genome sequencing of a Ruminococcus-like bacterium, associated with irritable bowel syndrome.

scientific article

Isolation of DNA from bacterial samples of the human gastrointestinal tract

scientific article published in January 2006

Isolation of RNA from bacterial samples of the human gastrointestinal tract

scientific article published in January 2006

Isolation of a genetically accessible thermophilic xylan degrading bacterium from compost

scientific article published on 06 October 2016

Lactic acid bacteria - Genetics, metabolism and application

scientific article published on 01 August 2005

Lactic acid bacteria: life after genomics ⬇️

scientific article published on May 1, 2011

Lactobacillus plantarum WCFS1 and its host interaction: a dozen years after the genome

scientific article

Lactobacillus plantarum—survival, functional and potential probiotic properties in the human intestinal tract

article

Lactobacillus rhamnosus GG Intake Modifies Preschool Children's Intestinal Microbiota, Alleviates Penicillin-Associated Changes, and Reduces Antibiotic Use.

scientific article

Lactobacillus rhamnosus GG Outcompetes Enterococcus faecium via Mucus-Binding Pili: Evidence for a Novel and Heterospecific Probiotic Mechanism

scientific article published on 15 July 2016

Lactobacillus rhamnosus GG and its SpaC pilus adhesin modulate inflammatory responsiveness and TLR-related gene expression in the fetal human gut.

scientific article published on 12 January 2015

Lactobacillus sobrius sp. nov., abundant in the intestine of weaning piglets

scientific article

Large intergenic cruciform-like supermotifs in the Lactobacillus plantarum genome.

scientific article published on 13 March 2009

Linking phylogenetic identities of bacteria to starch fermentation in an in vitro model of the large intestine by RNA-based stable isotope probing.

scientific article published on 8 December 2008

Long-term effects on luminal and mucosal microbiota and commonly acquired taxa in faecal microbiota transplantation for recurrent Clostridium difficile infection

scientific article

Long-term impact of oral vancomycin, ciprofloxacin and metronidazole on the gut microbiota in healthy humans

scientific article published on 01 March 2019

Long-term monitoring of the human intestinal microbiota composition.

scientific article

Maintenance of a healthy trajectory of the intestinal microbiome during aging: a dietary approach

scientific article

Making sense of quorum sensing in lactobacilli: a special focus on Lactobacillus plantarum WCFS1.

scientific article published on December 2007

Maternal Fecal Microbiota Transplantation in Cesarean-Born Infants Rapidly Restores Normal Gut Microbial Development: A Proof-of-Concept Study

scientific article published on 18 September 2020

Mediterranean diet intervention alters the gut microbiome in older people reducing frailty and improving health status: the NU-AGE 1-year dietary intervention across five European countries

scientific article published on 17 February 2020

Metabolic improvement in obese patients after duodenal-jejunal exclusion is associated with intestinal microbiota composition changes

scientific article published on 14 February 2019

Metagenome analysis reveals yet unexplored reductive dechlorinating potential ofDehalobactersp. E1 growing in co-culture withSedimentibactersp

article

Metagenomic species profiling using universal phylogenetic marker genes

scientific article

Metagenomics meets time series analysis: unraveling microbial community dynamics

scientific article published on 22 May 2015

Metaproteomics approach to study the functionality of the microbiota in the human infant gastrointestinal tract

scientific article published on 8 December 2006

Metaproteomics of our microbiome — Developing insight in function and activity in man and model systems ⬇️

scientific article published on May 24, 2013

Metatranscriptome analysis of the human fecal microbiota reveals subject-specific expression profiles, with genes encoding proteins involved in carbohydrate metabolism being dominantly expressed

scientific article

Microarray Analysis and Barcoded Pyrosequencing Provide Consistent Microbial Profiles Depending on the Source of Human Intestinal Samples ⬇️

scientific article published on January 21, 2011

Microarray analysis reveals marked intestinal microbiota aberrancy in infants having eczema compared to healthy children in at-risk for atopic disease

scientific article

Microbes inside—from diversity to function: the case of Akkermansia ⬇️

scientific article published on March 22, 2012

Microbial Biotechnology-2020.

scientific article published on 11 August 2016

Microbial Biotechnology: evolution of your premier journal

scientific article published on January 2013

Microbial Functionality in the Human Gastrointestinal Tract

scientific article published in 2004

Microbial Metabolic Networks at the Mucus Layer Lead to Diet-Independent Butyrate and Vitamin B12 Production by Intestinal Symbionts

scientific article published on 19 September 2017

Microbial communities in the human small intestine: coupling diversity to metagenomics

scientific article published on June 2007

Microbial community- and metabolite dynamics of an anoxic dechlorinating bioreactor

scientific article published in July 2010

Microbial functionality in the human intestinal tract

scientific article published on January 2009

Microbial shifts and signatures of long-term remission in ulcerative colitis after faecal microbiota transplantation

scientific article

Microbial signatures in post-infectious irritable bowel syndrome--toward patient stratification for improved diagnostics and treatment

scientific article published on 29 October 2015

Microbiome yarns: microbiomology of curly and straight hair

scientific article published on March 2017

Microbiota conservation and BMI signatures in adult monozygotic twins ⬇️

scientific article published on November 29, 2012

Mining microbial metatranscriptomes for expression of antibiotic resistance genes under natural conditions

scientific article published on 8 July 2015

Mixed-culture transcriptome analysis reveals the molecular basis of mixed-culture growth in Streptococcus thermophilus and Lactobacillus bulgaricus

scientific article

Mixed-species genomic microarray analysis of fecal samples reveals differential transcriptional responses of bifidobacteria in breast- and formula-fed infants

scientific article

Model-driven design of a minimal medium for Akkermansia muciniphila confirms mucus adaptation

scientific article

Modulation of Mucosal Immune Response, Tolerance, and Proliferation in Mice Colonized by the Mucin-Degrader Akkermansia muciniphila.

scientific article

Molecular Diversity of Lactobacillus spp. and Other Lactic Acid Bacteria in the Human Intestine as Determined by Specific Amplification of 16S Ribosomal DNA ⬇️

scientific article published on January 1, 2002

Molecular Monitoring of Succession of Bacterial Communities in Human Neonates ⬇️

scientific article published on January 1, 2002

Molecular analysis of the role of two aromatic aminotransferases and a broad-specificity aspartate aminotransferase in the aromatic amino acid metabolism of Pyrococcus furiosus

scientific article published in September 2002

Molecular and Comparative Analysis of the Hyperthermostable Pyrococcus Furiosus Glutamate Dehydrogenase and its Gene

article

Molecular and biochemical characterization of a distinct type of fructose-1,6-bisphosphatase from Pyrococcus furiosus

scientific article

Molecular and biochemical characterization of the thermoactive family 1 pectate lyase from the hyperthermophilic bacterium Thermotoga maritima.

scientific article

Molecular approaches for the detection and identification of bifidobacteria and lactobacilli in the human gastrointestinal tract

scientific article published on November 2003

Molecular approaches to study probiotic bacteria

article by Elaine E. Vaughan et al published December 1999 in Trends in Food Science and Technology

Molecular characterization of H2O2-forming NADH oxidases from Archaeoglobus fulgidus

scientific article

Molecular characterization of a conserved archaeal copper resistance (cop) gene cluster and its copper-responsive regulator in Sulfolobus solfataricus P2.

scientific article

Molecular characterization of fervidolysin, a subtilisin-like serine protease from the thermophilic bacterium Fervidobacterium pennivorans

scientific article

Molecular ecology of the yet uncultured bacterial Ct85-cluster in the mammalian gut

scientific article published on 25 September 2019

More than just a gut feeling: constraint-based genome-scale metabolic models for predicting functions of human intestinal microbes

scientific article

Mouse models for human intestinal microbiota research: a critical evaluation

scientific article

Mucin-bacterial interactions in the human oral cavity and digestive tract

scientific article

Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces

scientific article

Mucosal adhesion properties of the probiotic Lactobacillus rhamnosus GG SpaCBA and SpaFED pilin subunits.

scientific article

Multiparametric flow cytometry and cell sorting for the assessment of viable, injured, and dead bifidobacterium cells during bile salt stress

scientific article published on November 2002

Mutual Metabolic Interactions in Co-cultures of the Intestinal Anaerostipes rhamnosivorans With an Acetogen, Methanogen, or Pectin-Degrader Affecting Butyrate Production

scientific article published on 01 November 2019

Navigating through metaproteomics data: a logbook of database searching

scientific article published on 16 March 2015

Next Generation Prokaryotic Engineering: The CRISPR-Cas Toolkit

scientific article published on March 2016

Next-Generation Beneficial Microbes: The Case of Akkermansia muciniphila

scientific article published on 22 September 2017

Novel Polyfermentor intestinal model (PolyFermS) for controlled ecological studies: validation and effect of pH.

scientific article

Optimising single cell activity assessment of Lactobacillus plantarum by fluorescent in situ hybridisation as affected by growth

scientific article published on 01 October 2004

Oral treatment with Eubacterium hallii improves insulin sensitivity in db/db mice.

scientific article

Organic acid production from potato starch waste fermentation by rumen microbial communities from Dutch and Thai dairy cows

scientific article published on 25 January 2018

Overproduction of heterologous mannitol 1-phosphatase: a key factor for engineering mannitol production by Lactococcus lactis

scientific article published on March 2005

Partial restoration of normal intestinal microbiota in morbidly obese women six months after bariatric surgery

scientific article published on 26 November 2020

Pasteurized Akkermansia muciniphila increases whole-body energy expenditure and fecal energy excretion in diet-induced obese mice

scientific article published on 13 March 2020

Pasteurized Akkermansia muciniphila protects from fat mass gain but not from bone loss

scientific article published on 21 January 2020

Phylogenetic analysis of dysbiosis in ulcerative colitis during remission

scientific article published in March 2013

Physiological responses to folate overproduction in Lactobacillus plantarum WCFS1.

scientific article

Pili-like proteins of Akkermansia muciniphila modulate host immune responses and gut barrier function

scientific article

Polymorphisms, Chromosomal Rearrangements, and Mutator Phenotype Development during Experimental Evolution of Lactobacillus rhamnosus GG.

scientific article published on 15 April 2016

Post-genomics of lactic acid bacteria and other food-grade bacteria to discover gut functionality

scientific article published on April 2004

Post-natal development of the porcine microbiota composition and activities

scientific article published in July 2006

Potential of proton-pumping rhodopsins: engineering photosystems into microorganisms

scientific article published on 09 October 2013

Prebiotics and other microbial substrates for gut functionality

scientific article

Probiotic Gut Microbiota Isolate Interacts with Dendritic Cells via Glycosylated Heterotrimeric Pili

scientific article

Probiotic and other functional microbes: from markets to mechanisms

scientific article

Probiotic supplementation restores normal microbiota composition and function in antibiotic-treated and in caesarean-born infants

article

Production by Clostridium acetobutylicum ATCC 824 of CelG, a cellulosomal glycoside hydrolase belonging to family 9.

scientific article

Production of butyrate from lysine and the Amadori product fructoselysine by a human gut commensal

scientific article

Profiling human gut bacterial metabolism and its kinetics using [U-13C]glucose and NMR.

scientific article published in January 2010

Protein costs do not explain evolution of metabolic strategies and regulation of ribosomal content: does protein investment explain an anaerobic bacterial Crabtree effect?

scientific article published on 9 May 2015

Proteome analysis of Lactobacillus rhamnosus GG using 2-D DIGE and mass spectrometry shows differential protein production in laboratory and industrial-type growth media.

scientific article published in November 2009

Proteomic analysis of log to stationary growth phase Lactobacillus plantarum cells and a 2-DE database

scientific article published in December 2006

Proteomics and transcriptomics characterization of bile stress response in probiotic Lactobacillus rhamnosus GG.

scientific article

Pseudovitamin B(12) is the corrinoid produced by Lactobacillus reuteri CRL1098 under anaerobic conditions

scientific article published on 17 September 2007

Publisher Correction: Enterotypes in the landscape of gut microbial community composition

scientific article published on 13 February 2018

Quantification of uncultured Ruminococcus obeum-like bacteria in human fecal samples by fluorescent in situ hybridization and flow cytometry using 16S rRNA-targeted probes

scientific article published in September 2002

Reclassification of Eubacterium hallii as Anaerobutyricum hallii gen. nov., comb. nov., and description of Anaerobutyricum soehngenii sp. nov., a butyrate and propionate-producing bacterium from infant faeces

scientific article published on 23 October 2018

Reconstructing functional networks in the human intestinal tract using synthetic microbiomes

scientific article published on 06 April 2019

Reply

Reply to Konstantinov and Peppelenbosch

scientific article published on 26 February 2013

Representational difference analysis and real-time PCR for strain-specific quantification of Lactobacillus sobrius sp. nov

scientific article

Reproducibility and repeatability of six high-throughput 16S rDNA sequencing protocols for microbiota profiling

scholarly article by Sajan C Raju published in April 2018

Reproducibility and repeatability of six high-throughput 16S rDNA sequencing protocols for microbiota profiling

Reset of a critically disturbed microbial ecosystem: faecal transplant in recurrent Clostridium difficile infection

scientific article

Responses of gut microbiota and glucose and lipid metabolism to prebiotics in genetic obese and diet-induced leptin-resistant mice

scientific article

Richness of human gut microbiome correlates with metabolic markers

scientific article (publication date: 29 August 2013)

Role of "Dehalococcoides" spp. in the anaerobic transformation of hexachlorobenzene in European rivers

scientific article

Role of phosphate in the central metabolism of two lactic acid bacteria--a comparative systems biology approach

scientific article

Romboutsia hominis sp. nov., the first human gut-derived representative of the genus Romboutsia, isolated from ileostoma effluent

scientific article published on 18 September 2018

S layer protein A of Lactobacillus acidophilus NCFM regulates immature dendritic cell and T cell functions

scholarly article

Safety of Novel Microbes for Human Consumption: Practical Examples of Assessment in the European Union.

scientific article published on 12 September 2017

Selected aspects of the human gut microbiota

scientific article published on 6 October 2017

Selection and characterization of a SpaCBA pilus-secreting food-grade derivative of Lacticaseibacillus rhamnosus GG

scientific article published on 08 January 2021

Selection and characterization of conditionally active promoters in Lactobacillus plantarum, using alanine racemase as a promoter probe

scientific article

Semi-automated extraction of microbial DNA from feces for qPCR and phylogenetic microarray analysis

scientific article

Serum metabolite profiling yields insights into health promoting effect of A. muciniphila in human volunteers with a metabolic syndrome

scientific article published on 01 January 2021

Spatial and temporal expression of Lactobacillus plantarum genes in the gastrointestinal tracts of mice

scientific article published on 27 October 2006

Specific response of a novel and abundant Lactobacillus amylovorus-like phylotype to dietary prebiotics in the guts of weaning piglets

scientific article published on July 2004

Stability of the total and functional microbial communities in river sediment mesocosms exposed to anthropogenic disturbances

scientific article

Standardized assay medium to measure Lactococcus lactis enzyme activities while mimicking intracellular conditions

scientific article published on 21 October 2011

Streptococcus caviae sp. nov., isolated from guinea pig faecal samples

scientific article

Substrate specificity engineering of beta-mannosidase and beta-glucosidase from Pyrococcus by exchange of unique active site residues

scientific article

Substrate-induced production and secretion of cellulases by Clostridium acetobutylicum

scientific article published on September 2004

Sugar Coating the Envelope: Glycoconjugates for Microbe-Host Crosstalk.

scientific article

Sugar utilisation and conservation of the gal-lac gene cluster in Streptococcus thermophilus

scientific article published in February 2004

Supplementation with Akkermansia muciniphila in overweight and obese human volunteers: a proof-of-concept exploratory study

scientific article published on 01 July 2019

Supplementation with engineered Lactococcus lactis improves the folate status in deficient rats

scientific article published in July 2010

Systems Biology of Host-Food-Microbe Interactions in the Mammalian Gut

Systems biology of the gut: the interplay of food, microbiota and host at the mucosal interface.

scientific article published on August 2010

TRASH: a novel metal-binding domain predicted to be involved in heavy-metal sensing, trafficking and resistance

scientific article published on 01 April 2003

The Effect of Allogenic Versus Autologous Fecal Microbiota Transfer on Symptoms, Visceral Perception and Fecal and Mucosal Microbiota in Irritable Bowel Syndrome: A Randomized Controlled Study

scientific article published on 01 April 2019

The Effect of Psyllium Husk on Intestinal Microbiota in Constipated Patients and Healthy Controls

scientific article published on 20 January 2019

The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota.

scientific article

The Gut Microbiota in the First Decade of Life

scientific article published on 29 August 2019

The Lrp family of transcriptional regulators

scientific article

The Mucin degrader Akkermansia muciniphila is an abundant resident of the human intestinal tract

scientific article

The N-Terminal GYPSY Motif Is Required for Pilin-Specific Sortase SrtC1 Functionality in Lactobacillus rhamnosus Strain GG

scientific article

The SOS response of Listeria monocytogenes is involved in stress resistance and mutagenesis

scientific article

The Sulfolobus solfataricus Lrp-like protein LysM regulates lysine biosynthesis in response to lysine availability

scientific article published on 31 May 2002

The Use of Defined Microbial Communities To Model Host-Microbe Interactions in the Human Gut

scientific article published on 13 March 2019

The Variable Regions of Lactobacillus rhamnosus Genomes Reveal the Dynamic Evolution of Metabolic and Host-Adaptation Repertoires

scientific article published on 28 June 2016

The alternative sigma factor sigmaB of Bacillus cereus: response to stress and role in heat adaptation

scientific article

The complete coenzyme B12 biosynthesis gene cluster of Lactobacillus reuteri CRL1098.

scientific article published on January 2008

The complete genomes of Lactobacillus plantarum and Lactobacillus johnsonii reveal extensive differences in chromosome organization and gene content

scientific article published in November 2004

The contribution of microbial biotechnology to sustainable development goals

scientific article published on 25 August 2017

The fecal bifidobacterial transcriptome of adults: a microarray approach

scientific article

The first 1000 cultured species of the human gastrointestinal microbiota.

scientific article

The first true obligately syntrophic propionate-oxidizing bacterium, Pelotomaculum schinkii sp. nov., co-cultured with Methanospirillum hungatei, and emended description of the genus Pelotomaculum

scientific article

The function of our microbiota: who is out there and what do they do?

scientific article

The genome of Akkermansia muciniphila, a dedicated intestinal mucin degrader, and its use in exploring intestinal metagenomes

scientific article

The gut microbiota plays a protective role in the host defence against pneumococcal pneumonia.

scientific article published on 28 October 2015

The heat-shock response of Listeria monocytogenes comprises genes involved in heat shock, cell division, cell wall synthesis, and the SOS response

scientific article published on 01 October 2007

The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates

scientific article

The intestinal LABs

scientific article

The intestinal microbiota: Importance for health and, potential therapeutic target ⬇️

scientific article published on 01 February 2013

The intestinal mucosa as a habitat of the gut microbiota and a rational target for probiotic functionality and safety

scientific article published in 2004

The little bacteria that can - diversity, genomics and ecophysiology of 'Dehalococcoides' spp. in contaminated environments

scientific article

The major secreted protein Msp1/p75 is O-glycosylated in Lactobacillus rhamnosus GG.

scientific article published on February 2012

The microbial eukaryote Blastocystis is a prevalent and diverse member of the healthy human gut microbiota.

scientific article

The mucosa-associated microbiota of PSC patients is characterized by low diversity and low abundance of uncultured Clostridiales II.

scientific article published on 28 December 2014

The novel porcine Lactobacillus sobrius strain protects intestinal cells from enterotoxigenic Escherichia coli K88 infection and prevents membrane barrier damage

scientific article published on December 2007

The prophage sequences of Lactobacillus plantarum strain WCFS1

scientific article published on 01 November 2003

The unique features of glycolytic pathways in Archaea.

scientific article

Therapeutic potential of fecal microbiota transplantation

scientific article

Thermal stabilization of an endoglucanase by cyclization

scientific article published on June 2012

Thioredoxin reductase is a key factor in the oxidative stress response of Lactobacillus plantarum WCFS1.

scientific article published on 28 August 2007

Through ageing, and beyond: gut microbiota and inflammatory status in seniors and centenarians

scientific article

Tipping elements in the human intestinal ecosystem

scientific article

Tools for the tract: understanding the functionality of the gastrointestinal tract

scientific article

Towards metagenome-scale models for industrial applications--the case of Lactic Acid Bacteria

scientific article

Towards standards for human fecal sample processing in metagenomic studies.

scientific article

Toxicological safety evaluation of pasteurized Akkermansia muciniphila

scientific article published on 28 July 2020

Tracking functional guilds: "Dehalococcoides" spp. in European river basins contaminated with hexachlorobenzene

scientific article

Transformation of folate-consuming Lactobacillus gasseri into a folate producer

scientific article

Translating the human microbiome

scientific article published in April 2013

Treatment with Anaerobutyricum soehngenii: a pilot study of safety and dose-response effects on glucose metabolism in human subjects with metabolic syndrome

scientific article published on 27 March 2020

Two homologous Agr-like quorum-sensing systems cooperatively control adherence, cell morphology, and cell viability properties in Lactobacillus plantarum WCFS1.

scientific article published on 19 September 2008

Unity in organisation and regulation of catabolic operons in Lactobacillus plantarum, Lactococcus lactis and Listeria monocytogenes

scientific article published on 01 April 2005

Universal membrane-labeling combined with expression of Katushka far-red fluorescent protein enables non-invasive dynamic and longitudinal quantitative 3D dual-color fluorescent imaging of multiple bacterial strains in mouse intestine

scientific article published on 18 July 2019

Unravelling lactate-acetate and sugar conversion into butyrate by intestinal Anaerobutyricum and Anaerostipes species by comparative proteogenomics

scientific article published on 01 October 2020

Unravelling the one-carbon metabolism of the acetogen Sporomusa strain An4 by genome and proteome analysis.

scientific article published on 3 July 2015

Use of non-growing Lactococcus lactis cell suspensions for production of volatile metabolites with direct relevance for flavour formation during dairy fermentations

scientific article published on 10 December 2014

Use of the alr gene as a food-grade selection marker in lactic acid bacteria

scientific article

Using Recombinant Lactococci as an Approach to Dissect the Immunomodulating Capacity of Surface Piliation in Probiotic Lactobacillus rhamnosus GG ⬇️

scientific article published on May 14, 2013

Variation of mucin adhesion, cell surface characteristics, and molecular mechanisms among Lactobacillus plantarum isolated from different habitats.

scientific article published on 11 September 2017

Victivallis

scientific article published in 2015

Victivallis vadensis gen. nov., sp. nov., a sugar-fermenting anaerobe from human faeces

scientific article published in January 2003

Where bio meets nano: the many uses for nanoporous aluminum oxide in biotechnology

scientific article published on 12 August 2011

ameliorates the age-related decline in colonic mucus thickness and attenuates immune activation in accelerated aging mice

scientific article published on 08 March 2019

gerR, a novel ger operon involved in L-alanine- and inosine-initiated germination of Bacillus cereus ATCC 14579.

scientific article published on February 2005

sigma54-Mediated control of the mannose phosphotransferase sytem in Lactobacillus plantarum impacts on carbohydrate metabolism

scientific article

vanI: a novel D-Ala-D-Lac vancomycin resistance gene cluster found in Desulfitobacterium hafniense

scientific article

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