List of works by Nicole Roy

A Mathematical Model for the Hydrogenotrophic Metabolism of Sulphate-Reducing Bacteria

scientific article published on 17 July 2019

A Mathematical Model to Facilitate Study of Hydrogen Cross-feeding by the Human Colonic Microbiota (P13-036-19)

scholarly article

A Murine Oral-Exposure Model for Nano- and Micro-Particulates: Demonstrating Human Relevance with Food-Grade Titanium Dioxide

scientific article published on 04 May 2020

A case study: Using microbial abundance data to mathematically calculate organic acid production by human faecal microbiota within an in vitro batch fermentation

article

A combined omics approach to evaluate the effects of dietary curcumin on colon inflammation in the Mdr1a(-/-) mouse model of inflammatory bowel disease.

scientific article published on 13 September 2015

A comparison of analog and Next-Generation transcriptomic tools for mammalian studies.

scientific article published on 09 March 2011

A period of 10 weeks of increased protein consumption does not alter faecal microbiota or volatile metabolites in healthy older men: a randomised controlled trial

scientific article published on 03 July 2020

Allantoin as A Biomarker of Inflammation in an Inflammatory Bowel Disease Mouse Model: NMR Analysis of Urine

scholarly article by Philippa A. Dryland et al published 3 June 2008 in The Open Bioactive Compounds Journal

Alteration in propagating colonic contractions by dairy proteins in isolated rat large intestine

scientific article published on 11 September 2019

An in vitro rat model of colonic motility to determine the effect of β-casomorphin-5 on propagating contractions.

scientific article published in November 2014

Anisotropic nutrient transport in three-dimensional single species bacterial biofilms.

scientific article

Anti-proliferative effects of physiological concentrations of enterolactone in models of prostate tumourigenesis.

scientific article

Association of Insulin Resistance with Bone Strength and Bone Turnover in Menopausal Chinese-Singaporean Women without Diabetes.

scientific article published on 30 April 2018

Association of Plasma Lipids and Polar Metabolites with Low Bone Mineral Density in Singaporean-Chinese Menopausal Women: A Pilot Study.

scientific article

Associations between Self-Reported Physical Activity, Heel Ultrasound Parameters and Bone Health Measures in Post-Menopausal Women

scientific article published on 31 August 2019

Bacterial biofilms associated with food particles in the human large bowel.

scientific article published on 03 June 2011

Bifidobacterium pseudolongum in the Ceca of Rats Fed Hi-Maize Starch Has Characteristics of a Keystone Species in Bifidobacterial Blooms

scientific article published on 17 July 2018

Bovine dairy complex lipids improve in vitro measures of small intestinal epithelial barrier integrity.

scientific article published on 5 January 2018

Bowel microbiota moderate host physiological responses to dietary konjac in weanling rats.

scientific article published on 22 May 2013

Can nutritional modulation of maternal intestinal microbiota influence the development of the infant gastrointestinal tract?

scientific article published on 18 September 2012

Changes in bowel microbiota induced by feeding weanlings resistant starch stimulate transcriptomic and physiological responses.

scientific article

Changes in colon gene expression associated with increased colon inflammation in interleukin-10 gene-deficient mice inoculated with Enterococcus species.

scientific article

Changes in composition of caecal microbiota associated with increased colon inflammation in interleukin-10 gene-deficient mice inoculated with Enterococcus species

scientific article

Characterization of intestinal inflammation and identification of related gene expression changes in mdr1a(-/-) mice.

scientific article published on 27 September 2007

Circulatory and Urinary B-Vitamin Responses to Multivitamin Supplement Ingestion Differ between Older and Younger Adults

scientific article published on 17 November 2020

Circulatory miRNA biomarkers of metabolic syndrome

scientific article published on 21 August 2019

Cohort Profile: The Christchurch IBS cOhort to investigate Mechanisms FOr gut Relief and improved Transit (COMFORT)

scientific article published on 08 July 2020

Competition for Hydrogen Prevents Coexistence of Human Gastrointestinal Hydrogenotrophs in Continuous Culture

scientific article published on 29 May 2020

Complete Annotated Genome Sequence of Limosilactobacillus fermentum AGR1487

scientific article published on 07 January 2021

Complete Genome Sequence of Lactobacillus fermentum Strain AGR1485, a Human Oral Isolate

scientific article published on 03 September 2020

Composition and enrichment of caprine milk oligosaccharides from New Zealand Saanen goat cheese whey

scientific article published in 2015

Comprehensive Profiling of the Circulatory miRNAome Response to a High Protein Diet in Elderly Men: A Potential Role in Inflammatory Response Modulation

scientific article published on 01 April 2019

Correction to: Effects of short- and long-term glucocorticoid-induced osteoporosis on plasma metabolome and lipidome of ovariectomized sheep

scientific article published on 29 July 2020

Dietary A1 β-casein affects gastrointestinal transit time, dipeptidyl peptidase-4 activity, and inflammatory status relative to A2 β-casein in Wistar rats

scientific article published on 20 March 2014

Dietary Patterns, Body Composition, and Bone Health in New Zealand Postmenopausal Women

scientific article published on 22 October 2020

Dietary arachidonic acid-mediated effects on colon inflammation using transcriptome analysis

scientific article published on May 2010

Dietary format alters fecal bacterial populations in the domestic cat (Felis catus)

scientific article

Dietary oleic acid as a control fatty acid for polyunsaturated fatty acid intervention studies: A transcriptomics and proteomics investigation using interleukin-10 gene-deficient mice

article

Differences in Compositions of Gut Bacterial Populations and Bacteriophages in 5-11 Year-Olds Born Preterm Compared to Full Term

scientific article published on 16 June 2020

Digestive-resistant carbohydrates affect lipid metabolism in rats

Diversity of caecal bacteria is altered in interleukin-10 gene-deficient mice before and after colitis onset and when fed polyunsaturated fatty acids

scientific article published on 26 August 2010

Effect of Dietary Complex Lipids on the Biosynthesis of Piglet Brain Gangliosides.

scientific article published on 25 January 2016

Effect of a Semi-Purified Oligosaccharide-Enriched Fraction from Caprine Milk on Barrier Integrity and Mucin Production of Co-Culture Models of the Small and Large Intestinal Epithelium

scientific article published on 06 May 2016

Effects of Prenatal Consumption of Caprine Milk Oligosaccharides on Mice Mono-associated with Bifidobacterium Bifidum (AGR2166).

scientific article

Effects of kiwifruit extracts on colonic gene and protein expression levels in IL-10 gene-deficient mice

scientific article published on 9 December 2011

Effects of short- and long-term glucocorticoid-induced osteoporosis on plasma metabolome and lipidome of ovariectomized sheep

scientific article published on 05 June 2020

Evaluation of gastrointestinal transit in rats fed dietary fibres differing in their susceptibility to large intestine fermentation

scholarly article in Journal of Functional Foods, vol. 4 no. 1, January 2012

Evaluation of protease resistance and toxicity of amyloid-like food fibrils from whey, soy, kidney bean, and egg white

scientific article published on 11 July 2015

Expression profiling indicating low selenium-sensitive microRNA levels linked to cell cycle and cell stress response pathways in the CaCo-2 cell line.

scientific article

Five-week dietary exposure to dry diets alters the faecal bacterial populations in the domestic cat (Felis catus)

scientific article published on 01 October 2011

Folate and Vitamin B-12 Status Is Associated With Bone Mineral Density and Hip Strength of Postmenopausal Chinese-Singaporean Women

scientific article published on 02 September 2020

Gastric Emptying and Gastrointestinal Transit Compared among Native and Hydrolyzed Whey and Casein Milk Proteins in an Aged Rat Model

scientific article published on 13 December 2017

Gastroparesis and lipid metabolism-associated dysbiosis in Wistar-Kyoto rats

scientific article published on 13 April 2017

Gene expression changes in the colon epithelium are similar to those of intact colon during late inflammation in interleukin-10 gene deficient mice

scientific article

Genome-wide analysis of dietary eicosapentaenoic acid- and oleic acid-induced modulation of colon inflammation in interleukin-10 gene-deficient mice

scientific article published on 23 October 2008

Global DNA methylation measurement by HPLC using low amounts of DNA

scientific article published on 01 January 2011

Glucocorticoids affect bone mineral density and bone remodelling in OVX sheep: A pilot study

scientific article published on 15 November 2018

Glycan Utilisation and Function in the Microbiome of Weaning Infants

scientific article published on 04 July 2019

Gut Microbial Metabolites and Biochemical Pathways Involved in Irritable Bowel Syndrome: Effects of Diet and Nutrition on the Microbiome

scientific article published on 31 December 2019

Gut-Brain Axis in the Early Postnatal Years of Life: A Developmental Perspective

scientific article published on 05 August 2020

Human Breast Milk and Infant Formulas Differentially Modify the Intestinal Microbiota in Human Infants and Host Physiology in Rats

scientific article published on 16 December 2015

Human milk and infant formula differentially alters the microbiota composition and functional gene relative abundance in the small and large intestines in weanling rats

scientific article published on 19 July 2019

Human oral isolate Lactobacillus fermentum AGR1487 induces a pro-inflammatory response in germ-free rat colons

scientific article published on 4 February 2016

Human oral isolate Lactobacillus fermentum AGR1487 reduces intestinal barrier integrity by increasing the turnover of microtubules in Caco-2 cells.

scientific article

Hydrogen cross-feeders of the human gastrointestinal tract.

scientific article published on 18 December 2018

Impact of a High Protein Intake on the Plasma Metabolome in Elderly Males: 10 Week Randomized Dietary Intervention

scientific article published on 06 December 2019

Impact of dietary dairy polar lipids on lipid metabolism of mice fed a high-fat diet

scientific article

Impacts of Formula Supplemented with Milk Fat Globule Membrane on the Neurolipidome of Brain Regions of Piglets

scientific article published in 2022

Impaired Ribosome Biogenesis and Skeletal Muscle Growth in a Murine Model of Inflammatory Bowel Disease

scientific article published on 01 February 2016

In Vitro Fermentation of caprine milk oligosaccharides by bifidobacteria isolated from breast-fed infants

scientific article published on 20 November 2015

In vitro Fermentation of Digested Milk Fat Globule Membrane From Ruminant Milk Modulates Piglet Ileal and Caecal Microbiota

scientific article published on 09 July 2020

Increasing Evidence That Irritable Bowel Syndrome and Functional Gastrointestinal Disorders Have a Microbial Pathogenesis

scientific article published on 09 September 2020

Increasing intake of long-chain n-3 PUFA enhances lipoperoxidation and modulates hepatic gene expression in a dose-dependent manner

Infant Complementary Feeding of Prebiotics for theMicrobiome and Immunity

scientific article published on 09 February 2019

Inflammatory markers and bone health in postmenopausal women: a cross-sectional overview

scientific article published on 10 July 2019

Inflexibility of the plasma miRNA response following a high-carbohydrate meal in overweight insulin-resistant women

scientific article published on 04 February 2020

Influence of Bovine Whey Protein Concentrate and Hydrolysate Preparation Methods on Motility in the Isolated Rat Distal Colon.

scientific article published on 14 December 2016

Influence of dietary blueberry and broccoli on cecal microbiota activity and colon morphology in mdr1a−/− mice, a model of inflammatory bowel diseases

scientific article published on 23 November 2011

Influence of the Fruit Juice Carriers on the Ability of Lactobacillus plantarum DSM20205 to Improve in Vitro Intestinal Barrier Integrity and Its Probiotic Properties.

scientific article

Initiation and elongation steps of mRNA translation are involved in the increase in milk protein yield caused by growth hormone administration during lactation.

scientific article published in May 2009

Inoculation with enterococci does not affect colon inflammation in the multi-drug resistance 1a-deficient mouse model of IBD.

scientific article

Insulin regulation of amino-acid metabolism in the mammary gland of sheep in early lactation and fed fresh forage

scientific article published on June 2009

Intestinal amino acid absorption in lambs fed fresh Lucerne ( Medicago sativa) during an established Trichostrongylus colubriformis infection

scientific article published on 01 July 2008

Intestinal, hepatic, splanchnic and hindquarter amino acid and metabolite partitioning during an established Trichostrongylus colubriformis infection in the small intestine of lambs fed fresh Sulla (Hedysarum coronarium).

scientific article published on 12 July 2007

Investigating micronutrients and epigenetic mechanisms in relation to inflammatory bowel disease.

scientific article

Isotopic labeling of milk disialogangliosides (GD3).

scientific article published on 30 August 2016

Kiwifruit extracts inhibit cytokine production by lipopolysaccharide-activated macrophages, and intestinal epithelial cells isolated from IL10 gene deficient mice

scientific article published on 23 April 2011

Lactobacillus fermentum AGR1487 cell surface structures and supernatant increase paracellular permeability through different pathways

scientific article

Lactobacillus plantarum DSM 2648 is a potential probiotic that enhances intestinal barrier function.

scientific article

Lactobacillus plantarum MB452 enhances the function of the intestinal barrier by increasing the expression levels of genes involved in tight junction formation

scientific article

Lean Body Mass in the Prediction of Bone Mineral Density in Postmenopausal Women

article published in 2018

Lipid and Metabolite Profiles in Human Plasma and Associations with the Microbiome and Functional Gastrointestinal Disorders (P20-033-19)

Lipidomics of Brain Tissues in Rats Fed Human Milk from Chinese Mothers or Commercial Infant Formula

scientific article published on 28 October 2019

Live Faecalibacterium prausnitzii Does Not Enhance Epithelial Barrier Integrity in an Apical Anaerobic Co-Culture Model of the Large Intestine.

scientific article published on 12 December 2017

Live Faecalibacterium prausnitzii in an apical anaerobic model of the intestinal epithelial barrier.

scientific article published on 31 October 2014

Live Faecalibacterium prausnitzii induces greater TLR2 and TLR2/6 activation than the dead bacterium in an apical anaerobic co-culture system

scientific article published on 7 November 2017

Low folate and selenium in the mouse maternal diet alters liver gene expression patterns in the offspring after weaning.

scientific article published on 8 May 2015

Mammary transcriptome analysis of lactating dairy cows following administration of bovine growth hormone

scientific article published on 25 May 2016

Maternal conjugated linoleic acid supplementation reverses high-fat diet-induced skeletal muscle atrophy and inflammation in adult male rat offspring

scientific article published on 2 December 2015

Mathematical modelling supports the existence of a threshold hydrogen concentration and media-dependent yields in the growth of a reductive acetogen

scientific article published on 25 January 2020

Metabolism of Caprine Milk Carbohydrates by Probiotic Bacteria and Caco-2:HT29⁻MTX Epithelial Co-Cultures and Their Impact on Intestinal Barrier Integrity

scientific article published on 23 July 2018

Metabolome and microbiome profiling of a stress-sensitive rat model of gut-brain axis dysfunction

scientific article published on 01 October 2019

Metabolomic analysis identifies inflammatory and noninflammatory metabolic effects of genetic modification in a mouse model of Crohn's disease

scientific article published in April 2010

Metabolomics and Proteomics, and What to Do with All These 'Omes': Insights from Nutrigenomic Investigations in New Zealand

scientific article published on January 2014

Moderate levels of dietary sheep milk powder reduce experimentally induced colonic inflammation in rats

Modulation of colonic inflammation in Mdr1a(-/-) mice by green tea polyphenols and their effects on the colon transcriptome and proteome

scientific article published on 2 May 2013

Molecular Characterization of the Onset and Progression of Colitis in Inoculated Interleukin-10 Gene-Deficient Mice: A Role for PPARalpha

scientific article

Monoculture parameters successfully predict coculture growth kinetics of Bacteroides thetaiotaomicron and two Bifidobacterium strains.

scientific article published on 16 September 2014

Multidrug resistance gene deficient (mdr1a-/-) mice have an altered caecal microbiota that precedes the onset of intestinal inflammation.

scientific article

Nutrigenomics applied to an animal model of Inflammatory Bowel Diseases: transcriptomic analysis of the effects of eicosapentaenoic acid- and arachidonic acid-enriched diets

scientific article published on 19 April 2007

Omics analysis reveals variations among commercial sources of bovine milk fat globule membrane

scientific article published on 07 February 2020

Plasma Biomarkers and Identification of Resilient Metabolic Disruptions in Patients With Venous Thromboembolism Using a Metabolic Systems Approach

scientific article published on 06 August 2020

Post-weaning diet affects faecal microbial composition but not selected adipose gene expression in the cat (Felis catus).

scientific article

Post-weaning effects of milk and milk components on the intestinal mucosa in inflammation

scientific article published on 29 December 2009

Post-weaning selenium and folate supplementation affects gene and protein expression and global DNA methylation in mice fed high-fat diets

scientific article

Prebiotic effects of fermentable carbohydrate polymers may be modulated by faecal bulking of non-fermentable polysaccharides in the large bowel of rats

scholarly article by John A. Monro et al published 8 March 2012 in International Journal of Food Science and Technology

Prenatal caprine milk oligosaccharide consumption affects the development of mice offspring

scientific article published on 11 April 2016

Pro-inflammatory adjuvant properties of pigment-grade titanium dioxide particles are augmented by a genotype that potentiates interleukin 1β processing.

scientific article published on 8 December 2017

Promotility Action of the Probiotic Bifidobacterium lactis HN019 Extract Compared with Prucalopride in Isolated Rat Large Intestine.

scientific article published on 26 January 2017

Protein Intake at Twice the RDA in Older Men Increases Circulatory Concentrations of the Microbiome Metabolite Trimethylamine-N-Oxide (TMAO)

scientific article published on 12 September 2019

Protein-tannic acid multilayer films: A multifunctional material for microencapsulation of food-derived bioactives

scientific article published on 2 June 2017

Proteomic analysis of colon tissue from interleukin-10 gene-deficient mice fed polyunsaturated Fatty acids with comparison to transcriptomic analysis

scientific article published on 13 December 2011

RNA-stable-isotope probing shows utilization of carbon from inulin by specific bacterial populations in the rat large bowel.

scientific article published on 31 January 2014

Regulation of Amino Acid Transporters and Sensors in Response to a High protein Diet: A Randomized Controlled Trial in Elderly Men

scientific article published on 01 January 2019

Regulation of tight junction permeability by intestinal bacteria and dietary components

scientific article published on 23 March 2011

Seasonal and age effects on energy requirements in domestic short-hair cats (Felis catus) in a temperate environment.

scientific article published on 25 April 2012

Selenium-enriched foods are more effective at increasing glutathione peroxidase (GPx) activity compared with selenomethionine: a meta-analysis

scientific article

Short communication: Early-lactation, but not mid-lactation, bovine lactoferrin preparation increases epithelial barrier integrity of Caco-2 cell layers

scientific article published on 8 December 2016

Short communication: Processed bovine colostrum milk protein concentrate increases epithelial barrier integrity of Caco-2 cell layers

scientific article published on 16 October 2019

The COMFORT Cohort: Identifying Biomarkers Relevant to Functional Gastrointestinal Disorders (P20-039-19)

The Effects of Unfermented and Fermented Cow and Sheep Milk on the Gut Microbiota

scientific article published on 06 March 2019

The Microbiome in Functional Gastrointestinal Disorders Is Characterized by Bacteria and Genes Involved in Carbohydrate and Bile Acid Metabolism (OR23-01-19)

scientific article published on 13 June 2019

The Relationship between Nutrient Patterns and Bone Mineral Density in Postmenopausal Women

scientific article published on 03 June 2019

The Role of the Gut Microbiota in Dietary Interventions for Depression and Anxiety

scientific article published on 09 March 2020

The anti-proliferative effects of enterolactone in prostate cancer cells: evidence for the role of DNA licencing genes, mi-R106b cluster expression, and PTEN dosage.

scientific article

The effect of turmeric (Curcuma longa) extract on the functionality of the solute carrier protein 22 A4 (SLC22A4) and interleukin-10 (IL-10) variants associated with inflammatory bowel disease

scientific article

The effects of dietary curcumin and rutin on colonic inflammation and gene expression in multidrug resistance gene-deficient (mdr1a-/-) mice, a model of inflammatory bowel diseases.

scientific article published on 2 September 2008

The effects of dietary protein intake on appendicular lean mass and muscle function in elderly men: a 10-wk randomized controlled trial.

scientific article published in November 2017

The fate of (13)C-labelled and non-labelled inulin predisposed to large bowel fermentation in rats.

scientific article published on 18 January 2016

The interactions between endogenous bacteria, dietary components and the mucus layer of the large bowel.

scientific article published on 08 May 2012

The probiotic Escherichia coli Nissle 1917 inhibits propagating colonic contractions in the rat isolated large intestine

scientific article published on 21 November 2014

The role of cell surface architecture of lactobacilli in host-microbe interactions in the gastrointestinal tract.

scientific article published on 13 March 2013

Tracking gastrointestinal transit of solids in aged rats as pharmacological models of chronic dysmotility.

scientific article published on 29 March 2016

Understanding How Metabolites Link Diet, Host, and Microbiota in a Dysfunctional Gut Model Is Important to Establishing a System-wide Understanding of Gut Function (P20-035-19)

scientific article published on 13 June 2019

Understanding how commensal obligate anaerobic bacteria regulate immune functions in the large intestine.

scientific article

Understanding the Effects of Lactose Hydrolysis Modeling on the Main Oligosaccharides in Goat Milk Whey Permeate

scientific article published on 10 September 2019

Valine partitioning and kinetics between the gastrointestinal tract and hind limbs in lambs with an adult Trichostrongylus colubriformis burden

scientific article published on 27 May 2011

Whole-body valine and cysteine kinetics and tissue fractional protein synthesis rates in lambs fed Sulla (Hedysarum coronarium) and infected or not infected with adult Trichostrongylus colubriformis

scientific article published on 01 July 2006