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List of works by Bryce Nickels

"NAD-capQ" detection and quantitation of NAD caps

scientific article published on 25 July 2018

5' End Nicotinamide Adenine Dinucleotide Cap in Human Cells Promotes RNA Decay through DXO-Mediated deNADding.

scientific article

A Conserved Pattern of Primer-Dependent Transcription Initiation in Escherichia coli and Vibrio cholerae Revealed by 5' RNA-seq.

scientific article published on July 2015

A novel method for the production of in vivo‐assembled, recombinant Escherichia coli RNA polymerase lacking the α C‐terminal domain ⬇️

scientific article published on April 26, 2011

A novel phage-encoded transcription antiterminator acts by suppressing bacterial RNA polymerase pausing ⬇️

scientific article published on January 11, 2012

A regulator that inhibits transcription by targeting an intersubunit interaction of the RNA polymerase holoenzyme.

scholarly article

An RNA-seq method for defining endoribonuclease cleavage specificity identifies dual rRNA substrates for toxin MazF-mt3.

scientific article

An altered-specificity DNA-binding mutant of Escherichia coli sigma70 facilitates the analysis of sigma70 function in vivo

scientific article published on 01 June 2005

Analysis of Bacterial Transcription by "Massively Systematic Transcript End Readout," MASTER

scientific article published on 12 October 2018

CapZyme-Seq Comprehensively Defines Promoter-Sequence Determinants for RNA 5' Capping with NAD.

scientific article published on 18 April 2018

Chlamydia trachomatis protein GrgA activates transcription by contacting the nonconserved region of σ66.

scientific article

Detection of spacer precursors formed in vivo during primed CRISPR adaptation

scientific article published on 10 October 2019

Effects of Increasing the Affinity of CarD for RNA Polymerase on Mycobacterium tuberculosis Growth, rRNA Transcription, and Virulence.

scientific article

Growth phase-dependent control of transcription start site selection and gene expression by nanoRNAs.

scientific article published on July 2012

Growth-regulating Mycobacterium tuberculosis VapC-mt4 toxin is an isoacceptor-specific tRNase.

scientific article

Highly efficient 5' capping of mitochondrial RNA with NAD and NADH by yeast and human mitochondrial RNA polymerase

scientific article published on 12 December 2018

Interaction of CarD with RNA polymerase mediates Mycobacterium tuberculosis viability, rifampin resistance, and pathogenesis

scientific journal article

Interactions between RNA polymerase and the "core recognition element" counteract pausing

scientific article published in June 2014

Interactions between RNA polymerase and the core recognition element are a determinant of transcription start site selection

scientific article

Massively Systematic Transcript End Readout, "MASTER": Transcription Start Site Selection, Transcriptional Slippage, and Transcript Yields.

scientific article published on 24 November 2015

Multiplexed protein-DNA cross-linking: Scrunching in transcription start site selection

scientific article

NanoRNAs prime transcription initiation in vivo

scientific article published on June 2011

Non-coding nucleotides and amino acids near the active site regulate peptide deformylase expression and inhibitor susceptibility in Chlamydia trachomatis.

scientific article

Preparation of cDNA libraries for high-throughput RNA sequencing analysis of RNA 5' ends

scientific article published on January 2015

Regulation of RNA polymerase through the secondary channel.

scientific article published in August 2004

Role for GrgA in Regulation of σ28-Dependent Transcription in the Obligate Intracellular Bacterial Pathogen Chlamydia trachomatis

scientific article published on 24 September 2018

Structure of a ternary transcription activation complex

scientific article

Structure of the DNA-binding and RNA-polymerase-binding region of transcription antitermination factor λQ.

scientific article published on 16 January 2014

The bacteriophage lambda Q antiterminator protein contacts the beta-flap domain of RNA polymerase.

scholarly article

The interaction between sigma70 and the beta-flap of Escherichia coli RNA polymerase inhibits extension of nascent RNA during early elongation

scientific article

The mechanism of RNA 5′ capping with NAD+, NADH and desphospho-CoA

scientific article

The mechanism of variability in transcription start site selection

scientific article published on 23 November 2017

The sigma 70 subunit of RNA polymerase mediates a promoter-proximal pause at the lac promoter.

scientific article

Ubiquitous promoter-localization of essential virulence regulators in Francisella tularensis

scientific article published on April 2015

tRNA is a new target for cleavage by a MazF toxin

scientific article published on 5 January 2016

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