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List of works by Michael L Tress

APPRIS 2017: principal isoforms for multiple gene sets

scientific article published on 23 October 2017

APPRIS WebServer and WebServices

scientific article published on 18 May 2015

Alternative Splicing May Not Be the Key to Proteome Complexity

scientific article

Alternative splicing and co-option of transposable elements: the case of TMPO/LAP2α and ZNF451 in mammals

scientific article published on 2 March 2015

Alternatively Spliced Homologous Exons Have Ancient Origins and Are Highly Expressed at the Protein Level.

scientific article published on 10 June 2015

An analysis of tissue-specific alternative splicing at the protein level

scientific article published on 05 October 2020

An expanded evaluation of protein function prediction methods shows an improvement in accuracy ⬇️

scientific article

Analyzing the first drafts of the human proteome.

scientific article published on 16 July 2014

Comparative proteomics reveals a significant bias toward alternative protein isoforms with conserved structure and function

scientific article

Corrigendum: SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification

scientific article published in July 2018

Determination and validation of principal gene products.

scientific article

Evidence for transcript networks composed of chimeric RNAs in human cells

scientific article

Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx

scientific article

FireDB: a compendium of biological and pharmacologically relevant ligands

scientific article

From identification to validation to gene count.

scientific article

GENCODE reference annotation for the human and mouse genomes

scientific article published on 01 January 2019

GENCODE: the reference human genome annotation for The ENCODE Project

scientific article

Genomic and phenotypic characterization of 404 individuals with neurodevelopmental disorders caused by CTNNB1 variants

scientific article published in 2022

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

scientific article published in June 2007

Loose ends: almost one in five human genes still have unresolved coding status

scientific article published on 01 August 2018

Loose ends: almost one in five human genes still have unresolved coding status

scientific article published on 01 December 2018

Most Alternative Isoforms Are Not Functionally Important.

scientific article published on 5 May 2017

Most highly expressed protein-coding genes have a single dominant isoform.

scientific article

Multiple evidence strands suggest that there may be as few as 19,000 human protein-coding genes

scientific article (publication date: 15 November 2014)

Protein structural domains: definition and prediction

scientific article published on 01 November 2011

Scoring docking models with evolutionary information

scientific article published in August 2005

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

scientific article published on 19 November 2019

The GENCODE human gene set

scientific article

The evolutionary fate of alternatively spliced homologous exons after gene duplication

scientific article published on 29 April 2015

The implications of alternative splicing in the ENCODE protein complement

scientific article (publication date: 27 March 2007)

The potential clinical impact of the release of two drafts of the human proteome

scientific article published on 23 October 2015

TreeDet: a web server to explore sequence space

scientific article

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