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List of works by Michael J. Trnka

A Novel Mechanism For NF-κB Activation Via IκB Aggregation: Implications For Hepatic Mallory-Denk-Body Induced Inflammation

scientific article published on 10 September 2020

A Viral Protein Restricts Drosophila RNAi Immunity by Regulating Argonaute Activity and Stability

scientific article published on 01 October 2018

An ER translocon for multi-pass membrane protein biogenesis

scientific article published on 21 August 2020

Chaperonin TRiC/CCT Modulates the Folding and Activity of Leukemogenic Fusion Oncoprotein AML1-ETO.

scientific article published on 24 December 2015

Covalent heme attachment to the protein in human heme oxygenase-1 with selenocysteine replacing the His25 proximal iron ligand.

scientific article

Cross-linking/Mass Spectrometry: A Community-Wide, Comparative Study Towards Establishing Best Practice Guidelines

scientific article

Deconvolution method for specific and nonspecific binding of ligand to multiprotein complex by native mass spectrometry.

scientific article

Histone H3 binding to the PHD1 domain of histone demethylase KDM5A enables active site remodeling

scientific article published on 09 January 2019

Human liver cytochrome P450 3A4 ubiquitination: molecular recognition by UBC7-gp78 autocrine motility factor receptor and UbcH5a-CHIP-Hsc70-Hsp40 E2-E3 ubiquitin ligase complexes

scientific article

Improved Peak Detection and Deconvolution of Native Electrospray Mass Spectra from Large Protein Complexes

scientific article published on September 2015

LEM2 phase separation promotes ESCRT-mediated nuclear envelope reformation

scientific article published on 29 April 2020

Ligand-induced conformational heterogeneity of cytochrome P450 CYP119 identified by 2D NMR spectroscopy with the unnatural amino acid (13)C-p-methoxyphenylalanine.

scientific article published on December 2008

Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin.

scientific article published on 21 June 2017

Matching cross-linked peptide spectra: only as good as the worse identification

scientific article published on 12 December 2013

Molecular architecture of the yeast Mediator complex

scientific article

Photoaffinity Labeling of Cytochrome P450s with Imidazole-tethered Benzophenone Compounds ⬇️

doctoral dissertation by Michael J Trnka, Chemistry, University of Washington, 2004

Photoaffinity labeling of P450Cam by an imidazole-tethered benzophenone probe.

scientific article published on 14 November 2005

Reconstitution of nucleosome demethylation and catalytic properties of a Jumonji histone demethylase.

scientific article

Regulation of Rvb1/Rvb2 by a Domain within the INO80 Chromatin Remodeling Complex Implicates the Yeast Rvbs as Protein Assembly Chaperones

scientific article published on June 2017

Structure of a Complete Mediator-RNA Polymerase II Pre-Initiation Complex

scientific article

The nucleosomal acidic patch relieves auto-inhibition by the ISWI remodeler SNF2h.

scientific article published on 17 April 2018

The role of conformational flexibility on protein supercharging in native electrospray ionization.

scientific article published on 14 March 2011

Topographic studies of the GroEL-GroES chaperonin complex by chemical cross-linking using diformyl ethynylbenzene: the power of high resolution electron transfer dissociation for determination of both peptide sequences and their attachment sites

scientific article

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