List of works by Aalt D J van Dijk

A large-scale evaluation of computational protein function prediction

scientific article

A quantitative and dynamic model of the Arabidopsis flowering time gene regulatory network

scientific article published on 26 February 2015

Acid-base balance of umbilical artery blood of liveborn piglets at birth and its relation with factors affecting delivery of individual piglets

scientific article published on 13 June 2006

An analysis of characterized plant sesquiterpene synthases

scientific article published on 13 November 2018

An expanded evaluation of protein function prediction methods shows an improvement in accuracy ⬇️

scientific article

An interactomics overview of the human and bovine milk proteome over lactation

scientific article published on January 2016

Analysis of functional redundancies within the Arabidopsis TCP transcription factor family.

scientific article published on 15 October 2013

Arabidopsis class I and class II TCP transcription factors regulate jasmonic acid metabolism and leaf development antagonistically.

scientific article published on 20 June 2012

Characterization of SOC1's central role in flowering by the identification of its upstream and downstream regulators.

scientific article published on 12 July 2012

Combining NMR relaxation with chemical shift perturbation data to drive protein-protein docking.

scientific article

Comparative analysis indicates that alternative splicing in plants has a limited role in functional expansion of the proteome.

scientific article

Comparative analysis of binding patterns of MADS-domain proteins in Arabidopsis thaliana.

scientific article published on 25 June 2018

Comprehensive phenotyping reveals interactions and functions of Arabidopsis thaliana TCP genes in yield determination

scientific article published on 29 April 2019

Conserved and variable correlated mutations in the plant MADS protein network.

scientific article

Continuous-time modeling of cell fate determination in Arabidopsis flowers

scientific article

Corrigendum: Towards recommendations for metadata and data handling in plant phenotyping

scientific article published on 01 March 2018

Cross-Family Transcription Factor Interactions: An Additional Layer of Gene Regulation.

scientific article published on November 2016

DNA sequence and shape are predictive for meiotic crossovers throughout the plant kingdom

scientific article published on 29 May 2018

Designing Eukaryotic Gene Expression Regulation Using Machine Learning

scientific article published on 17 August 2019

Dietary specific antibodies in spray-dried immune plasma prevent enterotoxigenic Escherichia coli F4 (ETEC) post weaning diarrhoea in piglets.

scientific article published on 29 April 2007

Distribution, position and genomic characteristics of crossovers in tomato recombinant inbred lines derived from an interspecific cross between Solanum lycopersicum and Solanum pimpinellifolium.

scientific article published on 31 October 2016

Divergent regulation of Arabidopsis SAUR genes: a focus on the SAUR10-clade

scientific article published on 19 December 2017

Explicit treatment of water molecules in data-driven protein-protein docking: the solvated HADDOCKing approach.

scientific article

Factors affecting duration of the expulsive stage of parturition and piglet birth intervals in sows with uncomplicated, spontaneous farrowings

scientific article published on 18 April 2005

Floral pathway integrator gene expression mediates gradual transmission of environmental and endogenous cues to flowering time.

scientific article published on 19 April 2017

Genome-wide computational function prediction of Arabidopsis proteins by integration of multiple data sources ⬇️

scientific article published on November 22, 2010

Impaired peroxisome proliferator-activated receptor gamma function through mutation of a conserved salt bridge (R425C) in familial partial lipodystrophy.

scientific article published on 20 February 2007

Improved inference of intermolecular contacts through protein-protein interaction prediction using coevolutionary analysis

scientific article published on 01 June 2019

Inferring the gene network underlying the branching of tomato inflorescence.

scientific article

Integrating structure-based machine learning and co-evolution to investigate specificity in plant sesquiterpene synthases

scientific article published on 22 March 2021

Interactome-wide prediction of protein-protein binding sites reveals effects of protein sequence variation in Arabidopsis thaliana.

scientific article

Meiotic recombination profiling of interspecific hybrid F1 tomato pollen by linked read sequencing

scientific article published on 09 December 2019

N-glycan occupancy of Arabidopsis N-glycoproteins.

scientific article

N-glycoproteomics in plants: perspectives and challenges.

scientific article published on 12 May 2011

Nuclear Magnetic Resonance-Based Modeling and Refinement of Protein Three-Dimensional Structures and Their Complexes

scientific article published in 2008

Prioritization of candidate genes in QTL regions based on associations between traits and biological processes

scientific article

Rice cytochrome P450 MAX1 homologs catalyze distinct steps in strigolactone biosynthesis.

scientific article published on 26 October 2014

SEPALLATA3: the 'glue' for MADS box transcription factor complex formation.

scientific article published on 25 February 2009

Sequence-based analysis of protein degradation rates.

scientific article published on 25 May 2017

Similarities between plant traits based on their connection to underlying gene functions.

scientific article published on 10 August 2017

Solvated docking: introducing water into the modelling of biomolecular complexes.

scientific article

Solvated protein-protein docking using Kyte-Doolittle-based water preferences

scientific article published on 24 December 2012

Species-Specific Genome Sequence Databases: A Practical Review

scientific article published on January 2017

Structural determinants of DNA recognition by plant MADS-domain transcription factors.

scientific article published on 25 November 2013

The (r)evolution of gene regulatory networks controlling Arabidopsis plant reproduction: a two-decade history

scientific article published on 9 June 2014

Towards recommendations for metadata and data handling in plant phenotyping.

scientific article published on 4 June 2015

Transcription factor mediated control of anthocyanin biosynthesis in vegetative tissues.

scientific article published on 30 November 2017

Tulipa gesneriana and Lilium longiflorum PEBP Genes and Their Putative Roles in Flowering Time Control.

scientific article published on 27 October 2017

WHISCY: what information does surface conservation yield? Application to data-driven docking.

scientific article

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