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List of works by Christopher J R Illingworth

A de novo approach to inferring within-host fitness effects during untreated HIV-1 infection

scientific article published on 03 June 2020

A large effective population size for established within-host influenza virus infection

scientific article published on 10 August 2020

A method to infer positive selection from marker dynamics in an asexual population.

scientific article published on 5 January 2012

A novel framework for inferring parameters of transmission from viral sequence data

article

Addicted? Reduced host resistance in populations with defensive symbionts

scientific article (publication date: 29 June 2016)

An entropic safety catch controls Hepatitis C virus entry and antibody resistance

scientific article published on 07 July 2022

Assessing the effect of dynamics on the closed-loop protein-folding hypothesis

scientific article

Assessing the role of polarization in docking.

scientific article

Building a mechanistic mathematical model of hepatitis C virus entry

scientific article published on 18 March 2019

Closed loop folding units from structural alignments: experimental foldons revisited.

scientific article

Components of selection in the evolution of the influenza virus: linkage effects beat inherent selection.

scientific article

Connectivity and binding-site recognition: applications relevant to drug design.

scientific article published in November 2010

Criteria for confirming sequence periodicity identified by Fourier transform analysis: application to GCR2, a candidate plant GPCR?

scientific article

Distinguishing Driver and Passenger Mutations in an Evolutionary History Categorized by Interference ⬇️

scientific article published on September 6, 2011

Effects of point mutations in pVHL on the binding of HIF-1α.

scientific article published on 22 November 2011

Fitness Inference from Short-Read Data: Within-Host Evolution of a Reassortant H5N1 Influenza Virus

scientific article

High-definition reconstruction of clonal composition in cancer

scientific article

High-resolution mapping of complex traits with a four-parent advanced intercross yeast population.

scientific article published on 13 September 2013

Identifying selection in the within-host evolution of influenza using viral sequence data

scientific article (publication date: July 2014)

Identifying subset errors in multiple sequence alignments.

scientific article

In vitro selection of miltefosine resistance in promastigotes of Leishmania donovani from Nepal: genomic and metabolomic characterization.

scientific article

Inferring Fitness Effects from Time-Resolved Sequence Data with a Delay-Deterministic Model.

scientific article published on 2 March 2018

Inferring genome-wide recombination landscapes from advanced intercross lines: application to yeast crosses.

scientific article

Inferring transmission bottleneck size from viral sequence data using a novel haplotype reconstruction method

scientific article published on 15 April 2020

Measurements of intrahost viral diversity require an unbiased diversity metric

scientific article published on 30 January 2019

Mutational load causes stochastic evolutionary outcomes in acute RNA viral infection

scientific article published on 01 January 2019

Quantifying selection acting on a complex trait using allele frequency time series data.

scientific article

Quantitative measurement of protease ligand conformation.

scientific article

Rapid identification of genes controlling virulence and immunity in malaria parasites.

scientific article

SAMFIRE: multi-locus variant calling for time-resolved sequence data

scientific article

Single-cell RNA-seq reveals hidden transcriptional variation in malaria parasites

scientific article published on 27 March 2018

The effective rate of influenza reassortment is limited during human infection

scientific article

The statistical significance of selected sense-antisense peptide interactions.

scientific article

Toward a consistent treatment of polarization in model QM/MM calculations.

scientific article

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